Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/1471-2105-11-237
https://doi.org/10.1186/1471-2105-11-237
Cited by: 868
Author(s): Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon Lin, David S. Lapointe, Michael R. Green
Published: about 14 years ago
Software Mentions 16
bioconductor: ACME
Algorithms for Calculating Microarray Enrichment (ACME)Papers that mentioned: 63
bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsPapers that mentioned: 47
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
bioconductor: ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing DataPapers that mentioned: 5
bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq dataPapers that mentioned: 697
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: IRanges
Foundation of integer range manipulation in BioconductorPapers that mentioned: 62
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107