Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: chipseq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/chipseq
chipseq: A package for analyzing chipseq data
1 version
Latest release: about 1 year ago
4 dependent packages
107,668 downloads total
Papers Mentioning chipseq 9
10.1186/1471-2105-11-237
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip dataCited by: 868
Author(s): Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon Lin, David S. Lapointe, Michael R. Green
Software Mentions: 16
Published: over 14 years ago
10.1093/gigascience/giy123
PiGx: reproducible genomics analysis pipelines with GNU GuixCited by: 51
Author(s): Ricardo Wurmus, Bora Uyar, Brendan Osberg, Vedran Franke, Alexander Gosdschan, Katarzyna Wreczycka, Jonathan Ronen, Altuna Akalin
Software Mentions: 15
Published: about 6 years ago
10.1371/journal.pcbi.1003118
Software for Computing and Annotating Genomic RangesCited by: 2,902
Author(s): Michael Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin Morgan, Vincent J. Carey
Software Mentions: 14
Published: over 11 years ago
10.1016/j.cels.2018.09.003
Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive PluripotencyCited by: 56
Author(s): Aleksandra Pękowska, Bernd Klaus, Wanqing Xiang, Jacqueline Severino, Nathalie Daigle, Felix A. Klein, Małgorzata Oleś, Rafael Casellas, Jan Ellenberg, Lars M. Steinmetz, Paul Bertone, Wolfgang Huber
Software Mentions: 11
Published: about 6 years ago
10.1186/s12859-016-1125-3
Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysisCited by: 3
Author(s): Nathan James Allen Cormier, Tyler Kolisnik, Mark Bieda
Software Mentions: 10
Published: over 8 years ago
10.1136/jitc-2020-001335
Druggable epigenetic suppression of interferon-induced chemokine expression linked to <i>MYCN</i> amplification in neuroblastomaCited by: 15
Author(s): Johanna A Seier, Julia Reinhardt, Kritika Saraf, Susanna S. Ng, Julian Philipp Layer, Dillon Corvino, Kristina Althoff, Frank A. Giordano, Alexander Schramm, Matthias Fischer, Michael Hölzel
Software Mentions: 7
Published: over 3 years ago
10.1186/s13059-016-1057-2
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysisCited by: 52
Author(s): Nina Koenecke, Jeff Johnston, Bjoern Gaertner, Malini Natarajan, Julia Zeitlinger
Software Mentions: 5
Published: about 8 years ago
10.1371/journal.pone.0094164
From Human Monocytes to Genome-Wide Binding Sites - A Protocol for Small Amounts of Blood: Monocyte Isolation/ChIP-Protocol/Library Amplification/Genome Wide Computational Data AnalysisCited by: 4
Author(s): Sebastian Weiterer, Florian Uhle, Sabin Bhuju, Michael Jarek, Markus A. Weigand, Marek Bartkuhn
Software Mentions: 4
Published: over 10 years ago
10.7554/eLife.39633
Role of the pre-initiation complex in Mediator recruitment and dynamicsCited by: 31
Author(s): Elisabeth R. Knoll, Zhengwei Zhu, Debasish Sarkar, David Landsman, Randall H. Morse
Software Mentions: 2
Published: about 6 years ago