Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: ChIPseqR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
1 version
Latest release: about 1 year ago
37,871 downloads total
Papers Mentioning ChIPseqR 5
10.1186/1471-2105-11-237
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip dataCited by: 868
Author(s): Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon Lin, David S. Lapointe, Michael R. Green
Software Mentions: 16
Published: over 14 years ago
10.1186/s12864-017-3580-2
NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing dataCited by: 37
Author(s): Yevhen Vainshtein, Karsten Rippe, Vladimir B. Teif
Software Mentions: 7
Published: almost 8 years ago
10.1186/s13059-020-01953-0
ncHMR detector: a computational framework to systematically reveal non-classical functions of histone modification regulatorsCited by: 7
Author(s): Shengen Hu, Dawei Huo, Zhaowei Yu, Yujie Chen, Jing Liu, Lin Liu, Xudong Wu, Yong Zhang
Software Mentions: 6
Published: almost 5 years ago
10.1186/1471-2105-14-169
Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq dataCited by: 21
Author(s): Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A C ‘t Hoen
Software Mentions: 5
Published: over 11 years ago
10.1186/1471-2105-12-39
ChIPseqR: analysis of ChIP-seq experimentsCited by: 21
Author(s): Peter Humburg, Chris A. Helliwell, David Bulger, Graham N. Stone
Software Mentions: 2
Published: almost 14 years ago