Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1016/j.csbj.2015.08.004
https://doi.org/10.1016/j.csbj.2015.08.004
Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis
Cited by: 73
Author(s): Daniel Spies, Constance Ciaudo
Published: over 9 years ago
Software Mentions 11
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
bioconductor: EBSeqHMM
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experimentsPapers that mentioned: 4
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: FGNet
Functional Gene Networks derived from biological enrichment analysesPapers that mentioned: 7
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression DataPapers that mentioned: 119
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq dataPapers that mentioned: 321
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsPapers that mentioned: 155
bioconductor: sSeq
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample sizePapers that mentioned: 8