Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: sSeq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/sSeq

Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
1 version
Latest release: 12 months ago
1 dependent package
27,241 downloads total

Papers Mentioning sSeq 8

10.1016/j.csbj.2015.08.004

Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis
Cited by: 73
Author(s): Daniel Spies, Constance Ciaudo
Software Mentions: 11
Published: almost 10 years ago

10.1186/1471-2164-15-S10-S7

LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data
Cited by: 16
Author(s): Bingqing Lin, Lifeng Zhang, Xin Chen
Software Mentions: 6
Published: almost 10 years ago

10.1186/s12859-016-1208-1

NBLDA: negative binomial linear discriminant analysis for RNA-Seq data
Cited by: 34
Author(s): Kai Dong, Hongyu Zhao, Tiejun Tong, Xiang Wan
Software Mentions: 6
Published: about 8 years ago

Foxm1 regulates neural progenitor fate during spinal cord regeneration
Cited by: 6
Author(s): Diane Pelzer, Lauren S. Phipps, Raphaël Thuret, Carlos J Gallardo-Dodd, Syed Murtuza Baker, Karel Dorey
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0081415

Dispersion Estimation and Its Effect on Test Performance in RNA-seq Data Analysis: A Simulation-Based Comparison of Methods
Cited by: 29
Author(s): Will Landau, Peng Liu
Software Mentions: 5
Published: almost 11 years ago

10.1186/1471-2164-15-S6-S18

Comparative exomics of Phalariscultivars under salt stress
Cited by: 12
Author(s): Niina Haiminen, Manfred Klaas, Zeyu Zhou, Filippo Utro, Paul Cormican, Thomas Didion, Christian S. Jensen, Christopher E. Mason, Susanne Barth, Laxmi Parida
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0140032

Modeling Exon-Specific Bias Distribution Improves the Analysis of RNA-Seq Data
Cited by: 1
Author(s): Xuejun Liu, Li Zhang, Songcan Chen
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijms22094372

Single Cell Gene Expression Analysis in a 3D Microtissue Liver Model Reveals Cell Type-Specific Responses to Pro-Fibrotic TGF-β1 Stimulation
Cited by: 4
Author(s): Catherine Jane Messner, Lmar Babrak, Gaia Titolo, Michaela Caj, Enkelejda Miho, Laura Suter‐Dick
Software Mentions: 2
Published: over 3 years ago