Packages with Software Mentions in Scientific Papers

cran: interleave

Converts Tabular Data to Interleaved Vectors
Papers that mentioned: 2

Very Likely Science (75)

pypi: ansi

ANSI cursor movement and graphics
Papers that mentioned: 2

Very Likely Science (75)

cran: cgmanalysis

Clean and Analyze Continuous Glucose Monitor Data
Papers that mentioned: 2

Very Likely Science (83)

pypi: save

A very simple module to safely save data to files in python
Papers that mentioned: 2

Very Likely Science (65)

cran: HACSim

Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment
Papers that mentioned: 2

Very Likely Science (100)

bioconductor: scMAGeCK

Papers that mentioned: 2

Unlikely Science (0)

pypi: fastdm

Python wrapper for fast-dm
Papers that mentioned: 2

Very Likely Science (65)

cran: InPosition

Inference Tests for ExPosition
Papers that mentioned: 2

Very Likely Science (75)

cran: shuffle

The Shuffle Estimator for Explainable Variance
Papers that mentioned: 2

Very Likely Science (85)

pypi: Brotli

Python bindings for the Brotli compression library
Papers that mentioned: 2

Very Likely Science (100)

cran: divest

Get Images Out of DICOM Format Quickly
Papers that mentioned: 2

Very Likely Science (100)

cran: EQL

Extended-Quasi-Likelihood-Function (EQL)
Papers that mentioned: 2

Very Likely Science (75)

cran: odbc

Connect to ODBC Compatible Databases (using the DBI Interface)
Papers that mentioned: 2

Very Likely Science (100)

pypi: clinica

Software platform for clinical neuroimaging studies
Papers that mentioned: 2

Very Likely Science (100)

cran: growth

Multivariate Normal and Elliptically-Contoured Repeated Measurements Models
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: INPower

An R package for computing the number of susceptibility SNPs
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: InTAD

Search for correlation between epigenetic signals and gene expression in TADs
Papers that mentioned: 2

Very Likely Science (100)

bioconductor: scoreInvHap

Get inversion status in predefined regions
Papers that mentioned: 2

Very Likely Science (90)

pypi: anal

Utility to stdout based on template file.
Papers that mentioned: 2

Very Likely Science (60)

pypi: pym

Console based paged menu module
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: affyPara

Papers that mentioned: 2

Unlikely Science (0)

bioconductor: IntEREst

Intron-Exon Retention Estimator
Papers that mentioned: 2

Very Likely Science (90)

bioconductor: IONiseR

Quality Assessment Tools for Oxford Nanopore MinION data
Papers that mentioned: 2

Very Likely Science (90)

pypi: pairdist

Pairwise distances
Papers that mentioned: 2

Very Likely Science (65)

pypi: recip

CM SageMath code
Papers that mentioned: 2

Very Likely Science (86)

pypi: ILAMB

The International Land Model Benchmarking Package
Papers that mentioned: 2

Very Likely Science (100)

pypi: fdtool

Identify functional dependencies, equivalences, and candidate keys in tabular data
Papers that mentioned: 2

Very Likely Science (100)

pypi: maui

Scientific PGAS Framework with IO
Papers that mentioned: 2

Very Likely Science (100)

bioconductor: ABAEnrichment

Papers that mentioned: 2

Unlikely Science (0)

pypi: Oncilla

Oncilla is the documentation building helper package of Oncilla, Color, Manager, Umbra, sIBL_GUI and sIBL_Reporter.
Papers that mentioned: 2

Very Likely Science (65)

cran: BALCONY

Better ALignment CONsensus analYsis
Papers that mentioned: 2

Very Likely Science (85)

cran: corehunter

Multi-Purpose Core Subset Selection
Papers that mentioned: 2

Very Likely Science (75)

cran: cOde

Automated C Code Generation for 'deSolve', 'bvpSolve'
Papers that mentioned: 2

Very Likely Science (75)

pypi: muse

n/a
Papers that mentioned: 2

Very Likely Science (65)

cran: iGSEA

Integrative Gene Set Enrichment Analysis Approaches
Papers that mentioned: 2

Very Likely Science (85)

cran: BayesComm

Bayesian Community Ecology Analysis
Papers that mentioned: 2

Very Likely Science (90)

cran: nat

NeuroAnatomy Toolbox for Analysis of 3D Image Data
Papers that mentioned: 2

Very Likely Science (100)

pypi: sashimi

Python library TBA
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: KCsmart

Multi sample aCGH analysis package using kernel convolution
Papers that mentioned: 2

Very Likely Science (100)

cran: CAinterprTools

Graphical Aid in Correspondence Analysis Interpretation and Significance Testings
Papers that mentioned: 2

Very Likely Science (60)

cran: flsa

Path Algorithm for the General Fused Lasso Signal Approximator
Papers that mentioned: 2

Very Likely Science (85)

pypi: ariadne

Ariadne is a Python library for implementing GraphQL servers.
Papers that mentioned: 2

Very Likely Science (100)

pypi: backprop

Backprop
Papers that mentioned: 2

Very Likely Science (100)

bioconductor: cycle

Significance of periodic expression pattern in time-series data
Papers that mentioned: 2

Very Likely Science (100)

pypi: Braindecode

A deep learning toolbox to decode raw time-domain EEG.
Papers that mentioned: 2

Very Likely Science (100)

cran: parsnip

A Common API to Modeling and Analysis Functions
Papers that mentioned: 2

Very Likely Science (100)

cran: icapca

Mixed ICA/PCA
Papers that mentioned: 2

Very Likely Science (83)

pypi: ts

Twitter Search CLI
Papers that mentioned: 2

Likely Science (40)

pypi: autocomplete

tiny 'autocomplete' tool using a "hidden markov model"
Papers that mentioned: 2

Likely Science (55)

bioconductor: dagLogo

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
Papers that mentioned: 2

Very Likely Science (98)

cran: deaR

Conventional and Fuzzy Data Envelopment Analysis
Papers that mentioned: 2

Very Likely Science (85)

pypi: FCD

Fréchet ChEMNet Distance
Papers that mentioned: 2

Very Likely Science (100)

pypi: RecLab

A simulation framework for recommender systems.
Papers that mentioned: 2

Very Likely Science (90)

cran: ibb

R Wrapper for Istanbul Municipality Open Data Portal
Papers that mentioned: 2

Very Likely Science (83)

bioconductor: mbkmeans

Mini-batch K-means Clustering for Single-Cell RNA-seq
Papers that mentioned: 2

Very Likely Science (100)

cran: mcsm

Papers that mentioned: 2

Unlikely Science (0)

bioconductor: icetea

Integrating Cap Enrichment with Transcript Expression Analysis
Papers that mentioned: 2

Very Likely Science (100)

pypi: pb

Python with braces for easy one-liners
Papers that mentioned: 2

Very Likely Science (65)

cran: event

Event History Procedures and Models
Papers that mentioned: 2

Very Likely Science (75)

pypi: uszipcode

USA zipcode programmable database, includes 2020 census data and geometry information.
Papers that mentioned: 2

Very Likely Science (65)

cran: msSurv

Nonparametric Estimation for Multistate Models
Papers that mentioned: 2

Very Likely Science (75)

pypi: rasterstats

Summarize geospatial raster datasets based on vector geometries
Papers that mentioned: 2

Very Likely Science (100)

cran: beepr

Easily Play Notification Sounds on any Platform
Papers that mentioned: 2

Very Likely Science (75)

cran: GWSDAT

GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Papers that mentioned: 2

Very Likely Science (85)

cran: fdatest

Interval Testing Procedure for Functional Data
Papers that mentioned: 2

Very Likely Science (75)

cran: MonteCarlo

Automatic Parallelized Monte Carlo Simulations
Papers that mentioned: 2

Very Likely Science (85)

cran: flip

Multivariate Permutation Tests
Papers that mentioned: 2

Very Likely Science (85)

pypi: population

A Python package to get population of countries.
Papers that mentioned: 2

Very Likely Science (65)

cran: NIPTeR

Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing
Papers that mentioned: 2

Very Likely Science (75)

cran: cpd

Complex Pearson Distributions
Papers that mentioned: 2

Very Likely Science (75)

pypi: wire

Papers that mentioned: 2

Very Likely Science (65)

cran: ivtools

Instrumental Variables
Papers that mentioned: 2

Very Likely Science (75)

pypi: bbknn

Batch balanced KNN
Papers that mentioned: 2

Very Likely Science (100)

pypi: amplikyzer

an amplicon methylation analyzer for flowgrams (SFF files)
Papers that mentioned: 2

Very Likely Science (100)

cran: ilc

Papers that mentioned: 2

Unlikely Science (0)

cran: CPMCGLM

Correction of the P-Value after Multiple Coding in Generalized Linear Models
Papers that mentioned: 2

Very Likely Science (85)

cran: latentnet

Latent Position and Cluster Models for Statistical Networks
Papers that mentioned: 2

Very Likely Science (85)

cran: ADCT

Adaptive Design in Clinical Trials
Papers that mentioned: 2

Very Likely Science (85)

pypi: cf

A command line client to Rackspace Cloud Files
Papers that mentioned: 2

Very Likely Science (65)

cran: lares

Analytics & Machine Learning Sidekick
Papers that mentioned: 2

Very Likely Science (84)

pypi: xterm

Custom keyboard and mouse events for xTerm terminals
Papers that mentioned: 2

Very Likely Science (65)

cran: ALEPlot

Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots
Papers that mentioned: 2

Very Likely Science (83)

bioconductor: logicFS

Identification of SNP Interactions
Papers that mentioned: 2

Very Likely Science (90)

pypi: ascii

Turns images into ascii art
Papers that mentioned: 2

Very Likely Science (65)

cran: BICORN

Integrative Inference of De Novo Cis-Regulatory Modules
Papers that mentioned: 2

Very Likely Science (83)

pypi: print

test
Papers that mentioned: 2

Very Likely Science (65)

pypi: Sheets

A declarative class framework for working with CSV files
Papers that mentioned: 2

Very Likely Science (65)

cran: BlakerCI

Blaker's Binomial and Poisson Confidence Limits
Papers that mentioned: 2

Very Likely Science (75)

pypi: hybridLFPy

methods to calculate extracellular signals of neural activity from spike events from spiking neuron networks
Papers that mentioned: 2

Very Likely Science (100)

cran: rerddap

General Purpose Client for 'ERDDAP' Servers
Papers that mentioned: 2

Very Likely Science (75)

cran: mully

Create, Modify and Visualize Multi-Layered Networks
Papers that mentioned: 2

Very Likely Science (100)

cran: Evomorph

Evolutionary Morphometric Simulation
Papers that mentioned: 2

Very Likely Science (85)

cran: mopac

Collection of Datasets Pertaining to Loop 1 "Mopac"
Papers that mentioned: 2

Very Likely Science (75)

cran: compound.Cox

Univariate Feature Selection and Compound Covariate for Predicting Survival
Papers that mentioned: 2

Very Likely Science (85)

cran: hapsim

Haplotype Data Simulation
Papers that mentioned: 2

Very Likely Science (85)

cran: harrietr

Wrangle Phylogenetic Distance Matrices and Other Utilities
Papers that mentioned: 2

Very Likely Science (97)

cran: ecipex

Efficient Calculation of Fine Structure Isotope Patterns via Fourier Transforms of Simplex-Based Elemental Models
Papers that mentioned: 2

Very Likely Science (75)

cran: multiplex

Algebraic Tools for the Analysis of Multiple Social Networks
Papers that mentioned: 2

Very Likely Science (100)

pypi: ffnet

Feed-forward neural network solution for python
Papers that mentioned: 2

Very Likely Science (90)

bioconductor: iCNV

Integrated Copy Number Variation detection
Papers that mentioned: 2

Very Likely Science (83)