Packages with Software Mentions in Scientific Papers

pypi: twin

Papers that mentioned: 1

Very Likely Science (65)

pypi: xmlrpclib

Stand-alone distribution of xmlrpclib.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: miRSM

Inferring miRNA sponge modules in heterogeneous data
Papers that mentioned: 1

Very Likely Science (100)

pypi: instruct

Compact/flexible/fast/strictly-typed/(add other ridiculous demands) object system - similar to Pydantic but focused on `__slot__`ed objects
Papers that mentioned: 1

Very Likely Science (85)

pypi: clintrials

clintrials is a library of clinical trial designs and methods in Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: saltpack

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: acid

Analysing Conditional Income Distributions
Papers that mentioned: 1

Very Likely Science (75)

cran: MAnorm2

Tools for Normalizing and Comparing ChIP-seq Samples
Papers that mentioned: 1

Very Likely Science (100)

cran: choiceDes

Design Functions for Choice Studies
Papers that mentioned: 1

Very Likely Science (75)

cran: JuliaCall

Seamless Integration Between R and 'Julia'
Papers that mentioned: 1

Very Likely Science (100)

cran: childesr

Accessing the 'CHILDES' Database
Papers that mentioned: 1

Very Likely Science (100)

pypi: mcs

Monticello repository synchronization tool
Papers that mentioned: 1

Likely Science (40)

cran: LVGP

Latent Variable Gaussian Process Modeling with Qualitative and Quantitative Input Variables
Papers that mentioned: 1

Very Likely Science (93)

cran: AdaSampling

Adaptive Sampling for Positive Unlabeled and Label Noise Learning
Papers that mentioned: 1

Very Likely Science (100)

cran: chameleon

Automatic Colors for Multi-Dimensional Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: flowtracks

Library for handling of PTV trajectory database.
Papers that mentioned: 1

Very Likely Science (100)

cran: cccp

Cone Constrained Convex Problems
Papers that mentioned: 1

Very Likely Science (75)

cran: adklakedata

Adirondack Long-Term Lake Data
Papers that mentioned: 1

Very Likely Science (75)

cran: LS2W

Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Papers that mentioned: 1

Very Likely Science (83)

cran: capl

Compute and Visualize CAPL-2 Scores and Interpretations
Papers that mentioned: 1

Likely Science (50)

cran: NetworkInference

Inferring Latent Diffusion Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: rPraat

Interface to Praat
Papers that mentioned: 1

Very Likely Science (95)

cran: AHM

Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments
Papers that mentioned: 1

Very Likely Science (93)

cran: lowpassFilter

Lowpass Filtering
Papers that mentioned: 1

Very Likely Science (83)

cran: rres

Realized Relatedness Estimation and Simulation
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: twilight

Estimation of local false discovery rate
Papers that mentioned: 1

Very Likely Science (90)

pypi: mitochondria

Papers that mentioned: 1

Very Likely Science (65)

pypi: FlowKit

Flow Cytometry Toolkit
Papers that mentioned: 1

Very Likely Science (95)

cran: longclust

Model-Based Clustering and Classification for Longitudinal Data
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: mogsa

Multiple omics data integrative clustering and gene set analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: albatradis

Comparitive transposon mutagenesis experiment analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: clock

A minimalist datetime library for Python
Papers that mentioned: 1

Very Likely Science (65)

cran: lmfor

Functions for Forest Biometrics
Papers that mentioned: 1

Very Likely Science (75)

cran: Brq

Bayesian Analysis of Quantile Regression Models
Papers that mentioned: 1

Very Likely Science (98)

pypi: clog

pretty-print with color
Papers that mentioned: 1

Very Likely Science (65)

pypi: BacterialTyper

Bacterial identification pipeline
Papers that mentioned: 1

Very Likely Science (100)

cran: lakemorpho

Lake Morphometry Metrics
Papers that mentioned: 1

Very Likely Science (100)

cran: breakDown

Model Agnostic Explainers for Individual Predictions
Papers that mentioned: 1

Very Likely Science (85)

pypi: ebus

ebus - Event bus
Papers that mentioned: 1

Very Likely Science (65)

cran: anndata

'anndata' for R
Papers that mentioned: 1

Very Likely Science (91)

cran: AnnoProbe

Annotate the Gene Symbols for Probes in Expression Array
Papers that mentioned: 1

Very Likely Science (91)

pypi: Santos

A task schedule
Papers that mentioned: 1

Very Likely Science (65)

cran: rstream

Streams of Random Numbers
Papers that mentioned: 1

Very Likely Science (83)

cran: AnnotationBustR

Extract Subsequences from GenBank Annotations
Papers that mentioned: 1

Very Likely Science (100)

cran: ao

Alternating Optimization
Papers that mentioned: 1

Very Likely Science (100)

pypi: cmaputil

Colormap analysis module
Papers that mentioned: 1

Very Likely Science (100)

cran: BOIN

Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1

Very Likely Science (85)

cran: jarbes

Just a Rather Bayesian Evidence Synthesis
Papers that mentioned: 1

Very Likely Science (85)

pypi: bacolonyzer

Analyse timeseries of QFA images
Papers that mentioned: 1

Very Likely Science (80)

pypi: mity

Mity: invoke orthogonal workflows from a single tool
Papers that mentioned: 1

Very Likely Science (65)

cran: rsvg

Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or Bitmap Arrays
Papers that mentioned: 1

Very Likely Science (83)

cran: aplot

Decorate a 'ggplot' with Associated Information
Papers that mentioned: 1

Very Likely Science (100)

pypi: CloudMade

CloudMade's online services client
Papers that mentioned: 1

Very Likely Science (65)

pypi: clove

Clove is a library that makes atomic swaps between chains easy.
Papers that mentioned: 1

Very Likely Science (65)

cran: bnma

Bayesian Network Meta-Analysis using 'JAGS'
Papers that mentioned: 1

Very Likely Science (85)

pypi: sapply

Easily apply arbitrary string manipulations on text.
Papers that mentioned: 1

Very Likely Science (85)

cran: aqp

Algorithms for Quantitative Pedology
Papers that mentioned: 1

Very Likely Science (100)

cran: Rsymphony

SYMPHONY in R
Papers that mentioned: 1

Very Likely Science (75)

pypi: MLatom

A Package for Atomistic Simulations with Machine Learning
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: SigCheck

Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Papers that mentioned: 1

Very Likely Science (90)

cran: rties

Modeling Interpersonal Dynamics
Papers that mentioned: 1

Very Likely Science (60)

cran: ArchaeoPhases

Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'
Papers that mentioned: 1

Very Likely Science (100)

pypi: mldl

Machine Learning Data Lineage tool (MLDL)
Papers that mentioned: 1

Very Likely Science (75)

pypi: Mixminion

Mixminion: Python implementation of the Type III Mix protocol (ALPHA)
Papers that mentioned: 1

Very Likely Science (65)

cran: RSwissMaps

Plot and Save Customised Swiss Maps
Papers that mentioned: 1

Very Likely Science (75)

cran: trustOptim

Trust Region Optimization for Nonlinear Functions with Sparse Hessians
Papers that mentioned: 1

Very Likely Science (100)

cran: ARHT

Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: seqCNA

Copy number analysis of high-throughput sequencing cancer data
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: seq2pathway

a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: metavizr

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
Papers that mentioned: 1

Very Likely Science (100)

pypi: sarah

Library with miscellaneous functionality
Papers that mentioned: 1

Very Likely Science (65)

cran: bit64

A S3 Class for Vectors of 64bit Integers
Papers that mentioned: 1

Very Likely Science (75)

pypi: babylon

ML implementations in Python.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: scry

Small-Count Analysis Methods for High-Dimensional Data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: scRecover

scRecover for imputation of single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

cran: Bios2cor

From Biological Sequences and Simulations to Correlation Analysis
Papers that mentioned: 1

Very Likely Science (60)

pypi: clp

Container Loading Problem
Papers that mentioned: 1

Very Likely Science (100)

pypi: reda

Reproducible Electrical Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: klic

Kernel Learning Integrative Clustering
Papers that mentioned: 1

Very Likely Science (100)

cran: rsyncrosim

The R Interface to 'SyncroSim'
Papers that mentioned: 1

Very Likely Science (90)

cran: bigleaf

Physical and Physiological Ecosystem Properties from Eddy Covariance Data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: metaseqR2

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
Papers that mentioned: 1

Very Likely Science (70)

cran: aRxiv

Interface to the arXiv API
Papers that mentioned: 1

Very Likely Science (100)

cran: bgmm

Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling
Papers that mentioned: 1

Very Likely Science (85)

cran: segclust2d

Bivariate Segmentation/Clustering Methods and Tools
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: RNAinteract

Estimate Pairwise Interactions from multidimensional features
Papers that mentioned: 1

Very Likely Science (90)

cran: netstat

Retrieve Network Statistics Including Available TCP Ports
Papers that mentioned: 1

Very Likely Science (85)

cran: assist

A Suite of R Functions Implementing Spline Smoothing Techniques
Papers that mentioned: 1

Very Likely Science (83)

pypi: flower

Celery Flower
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: rhdf5client

Access HDF5 content from HDF Scalable Data Service
Papers that mentioned: 1

Very Likely Science (83)

pypi: clump

Easy-to-use package for grouping, tagging and finding similar documents, using advanced natural language processing techniques
Papers that mentioned: 1

Very Likely Science (65)