bioconductor: miRcomp
Tools to assess and compare miRNA expression estimatation methods
Papers that mentioned: 1
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pypi: AICON
This is the AICON module.
Papers that mentioned: 1
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pypi: A.I
TDC PROJETOS
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cran: KGode
Kernel Based Gradient Matching for Parameter Inference in Ordinary Differential Equations
Papers that mentioned: 1
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pypi: akkadian
Translating Akkadian signs to transliteration using NLP algorithms
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cran: accept
The Acute COPD Exacerbation Prediction Tool (ACCEPT)
Papers that mentioned: 1
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cran: SECP
Statistical Estimation of Cluster Parameters
Papers that mentioned: 1
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cran: adaptMCMC
Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler
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bioconductor: MWASTools
MWASTools: an integrated pipeline to perform metabolome-wide association studies
Papers that mentioned: 1
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pypi: EasyROI
ROI Helper
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bioconductor: NetSAM
Network Seriation And Modularization
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cran: labeling
Axis Labeling
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cran: netdiffuseR
Analysis of Diffusion and Contagion Processes on Networks
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cran: LARF
Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects
Papers that mentioned: 1
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cran: lassoshooting
L1 Regularized Regression (Lasso) Solver using the Cyclic Coordinate Descent Algorithm aka Lasso Shooting
Papers that mentioned: 1
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cran: alphabetr
Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells
Papers that mentioned: 1
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bioconductor: oneSENSE
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)
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cran: netgsa
Network-Based Gene Set Analysis
Papers that mentioned: 1
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cran: AlphaPart
Partition/Decomposition of Breeding Values by Paths of Information
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cran: AMAP.Seq
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Papers that mentioned: 1
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pypi: easyrun
a simple subprocess manager,suport stream stdout \ async
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pypi: EasyStats
Gaussian and Binomial distributions
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cran: anacor
Simple and Canonical Correspondence Analysis
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cran: lcc
Longitudinal Concordance Correlation
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cran: ldamatch
Selection of Statistically Similar Research Groups
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cran: animaltracker
Animal Tracker
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cran: aprof
Amdahl's Profiler, Directed Optimization Made Easy
Papers that mentioned: 1
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cran: AquaEnv
Integrated Development Toolbox for Aquatic Chemical Model Generation
Papers that mentioned: 1
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cran: linearModel
Linear Model Functions
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pypi: ax
Ax - workflow apps builder
Papers that mentioned: 1
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cran: secrdesign
Sampling Design for Spatially Explicit Capture-Recapture
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Very Likely Science (100)
bioconductor: pcxn
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Papers that mentioned: 1
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pypi: axis
A Python library for communicating with devices from Axis Communications
Papers that mentioned: 1
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bioconductor: pipeComp
pipeComp pipeline benchmarking framework
Papers that mentioned: 1
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bioconductor: planet
Placental DNA methylation analysis tools
Papers that mentioned: 1
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cran: aspect
A General Framework for Multivariate Analysis with Optimal Scaling
Papers that mentioned: 1
Very Likely Science (93)
bioconductor: prebs
Probe region expression estimation for RNA-seq data for improved microarray comparability
Papers that mentioned: 1
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cran: asypow
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Papers that mentioned: 1
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cran: netplot
Beautiful Graph Drawing
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cran: bayesSurv
Bayesian Survival Regression with Flexible Error and Random Effects Distributions
Papers that mentioned: 1
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cran: bayesTFR
Bayesian Fertility Projection
Papers that mentioned: 1
Very Likely Science (93)
bioconductor: RegEnrich
Gene regulator enrichment analysis
Papers that mentioned: 1
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bioconductor: rhdf5client
Access HDF5 content from HDF Scalable Data Service
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pypi: flower
Celery Flower
Papers that mentioned: 1
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cran: netstat
Retrieve Network Statistics Including Available TCP Ports
Papers that mentioned: 1
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bioconductor: RNAinteract
Estimate Pairwise Interactions from multidimensional features
Papers that mentioned: 1
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cran: segclust2d
Bivariate Segmentation/Clustering Methods and Tools
Papers that mentioned: 1
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cran: bigleaf
Physical and Physiological Ecosystem Properties from Eddy Covariance Data
Papers that mentioned: 1
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pypi: reda
Reproducible Electrical Data Analysis
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cran: Biocomb
Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
Papers that mentioned: 1
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cran: Biolinv
Modelling and Forecasting Biological Invasions
Papers that mentioned: 1
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bioconductor: Sconify
A toolkit for performing KNN-based statistics for flow and mass cytometry data
Papers that mentioned: 1
Very Likely Science (100)
pypi: babar
Elephants never forget.
Papers that mentioned: 1
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cran: bit64
A S3 Class for Vectors of 64bit Integers
Papers that mentioned: 1
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bioconductor: seq2pathway
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
Papers that mentioned: 1
Very Likely Science (93)
bioconductor: seqCNA
Copy number analysis of high-throughput sequencing cancer data
Papers that mentioned: 1
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cran: trustOptim
Trust Region Optimization for Nonlinear Functions with Sparse Hessians
Papers that mentioned: 1
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bioconductor: SigCheck
Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Papers that mentioned: 1
Very Likely Science (90)
cran: blaster
Native R Implementation of an Efficient BLAST-Like Algorithm
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bioconductor: slalom
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
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Very Likely Science (100)
cran: BOIN
Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1
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pypi: ebus
ebus - Event bus
Papers that mentioned: 1
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cran: bPeaks
an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
Papers that mentioned: 1
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bioconductor: synlet
Hits Selection for Synthetic Lethal RNAi Screen Data
Papers that mentioned: 1
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cran: breakDown
Model Agnostic Explainers for Individual Predictions
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pypi: BacterialTyper
Bacterial identification pipeline
Papers that mentioned: 1
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pypi: ballet
Core functionality for lightweight, collaborative data science projects
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cran: lmreg
Data and Functions Used in Linear Models and Regression with R: An Integrated Approach
Papers that mentioned: 1
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bioconductor: transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
Papers that mentioned: 1
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bioconductor: tRanslatome
Comparison between multiple levels of gene expression
Papers that mentioned: 1
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pypi: balrog
Python access control library.
Papers that mentioned: 1
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cran: bucky
Bucky's Archive for Data Analysis in the Social Sciences
Papers that mentioned: 1
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pypi: flows
a Python automated workflow generator
Papers that mentioned: 1
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cran: capl
Compute and Visualize CAPL-2 Scores and Interpretations
Papers that mentioned: 1
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cran: LS2W
Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Papers that mentioned: 1
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cran: CDFt
Downscaling and Bias Correction via Non-Parametric CDF-Transform
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bioconductor: xmapbridge
Export plotting files to the xmapBridge for visualisation in X:Map
Papers that mentioned: 1
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cran: chameleon
Automatic Colors for Multi-Dimensional Data
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cran: LVGP
Latent Variable Gaussian Process Modeling with Qualitative and Quantitative Input Variables
Papers that mentioned: 1
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pypi: mcs
Monticello repository synchronization tool
Papers that mentioned: 1
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pypi: squad
Software Quality Dashboard
Papers that mentioned: 1
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cran: childesr
Accessing the 'CHILDES' Database
Papers that mentioned: 1
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cran: choiceDes
Design Functions for Choice Studies
Papers that mentioned: 1
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cran: MAnorm2
Tools for Normalizing and Comparing ChIP-seq Samples
Papers that mentioned: 1
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pypi: instruct
Compact/flexible/fast/strictly-typed/(add other ridiculous demands) object system - similar to Pydantic but focused on `__slot__`ed objects
Papers that mentioned: 1
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pypi: Fluence
Pytorch based deep learning library focussed on providing computationally efficient low resource methods and algorithms for NLP
Papers that mentioned: 1
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cran: clampSeg
Idealisation of Patch Clamp Recordings
Papers that mentioned: 1
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cran: CliquePercolation
Clique Percolation for Networks
Papers that mentioned: 1
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pypi: barcode
Design and test NGS barcodes.
Papers that mentioned: 1
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cran: cmaes
Covariance Matrix Adapting Evolutionary Strategy
Papers that mentioned: 1
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cran: MCPAN
Multiple Comparisons Using Normal Approximation
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cran: colorfulVennPlot
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
Papers that mentioned: 1
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cran: complexity
Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Papers that mentioned: 1
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cran: COMPoissonReg
Conway-Maxwell Poisson (COM-Poisson) Regression
Papers that mentioned: 1
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cran: mdthemes
Markdown Themes for 'ggplot2'
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pypi: jpeglib
Python envelope for the popular C librarylibjpeg for handling JPEG files.
Papers that mentioned: 1
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cran: ConSpline
Partial Linear Least-Squares Regression using Constrained Splines
Papers that mentioned: 1
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cran: contact
Creating Contact and Social Networks
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cran: nevada
Network-Valued Data Analysis
Papers that mentioned: 1
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cran: SemNeT
Methods and Measures for Semantic Network Analysis
Papers that mentioned: 1
Very Likely Science (95)