pypi: workbench | Projects | Ecosyste.ms: Papers

10.1186/s40168-018-0481-9

A de novo approach to disentangle partner identity and function in holobiont systems
Cited by: 13
Author(s): Arnaud Meng, Camille Marchet, Matthieu Le Corre, Pierre Peterlongo, Adriana Alberti, Corinne Da Silva, Patrick Wincker, Éric Pelletier, Ian Probert, Johan Decelle, StĂŠphane Le Crom, Fabrice Not, Lucie Bittner
Software Mentions: 1
Published: over 6 years ago

10.3390/mi11020155

Microinjection Molding of Out-of-Plane Bistable Mechanisms
Cited by: 9
Author(s): Wook-Bae Kim, Sol-Yi Han
Software Mentions: 1
Published: almost 5 years ago

10.3390/microorganisms8111666

Comparative Genomics Analysis of Vibrio anguillarum Isolated from Lumpfish (Cyclopterus lumpus) in Newfoundland Reveal Novel Chromosomal Organizations
Cited by: 10
Author(s): Ignacio Vásquez, Trung Cao, Setu Chakraborty, Hajarooba Gnanagobal, Nicole O’Brien, Jennifer Monk, Danny Boyce, Jillian D. Westcott, Javier Santander
Software Mentions: 1
Published: about 4 years ago

10.1080/23802359.2018.1437811

The complete chloroplast genome sequence of an Endangered orchid species Dendrobium bellatulum (Orchidaceae)
Cited by: 3
Author(s): Yunjiao Zhang, Cong Ma, Feng Yang, Xing Cheng, Ji Song
Software Mentions: 1
Published: almost 7 years ago

10.3390/molecules24010170

Sub-Inhibitory Doses of Individual Constituents of Essential Oils Can Select for Staphylococcus aureus Resistant Mutants
Cited by: 14
Author(s): Daniel Berdejo, Beatríz Chueca, Elisa Pagán, Adriana Renzoni, William L. Kelley, Rafael Pagán, Diego García-Gonzalo
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41385-021-00409-3

Hyaluronic acid is a negative regulator of mucosal fibroblast-mediated enhancement of HIV infection
Cited by: 7
Author(s): Johanne H Egedal, Guorui Xie, Thomas Packard, Anders Laustsen, Jason Neidleman, Κωνσταντίνος Γεωργίου, Satish K. Pillai, Warner C. Greene, Martin R. Jakobsen, Nadia R. Roan
Software Mentions: 1
Published: about 3 years ago

10.1186/1743-422X-9-192

Viral metagenomic analysis of bushpigs (Potamochoerus larvatus) in Uganda identifies novel variants of Porcine parvovirus 4 and Torque teno sus virus 1 and 2
Cited by: 26
Author(s): Anne-Lie Blomström, Karl Ståhl, Charles Masembe, Edward Okoth, Ademun Rose Okurut, Patrick Atmnedi, Stephen J. Kemp, Richard L. Bishop, Sándór Belák, Mikael Berg
Software Mentions: 1
Published: about 12 years ago

10.3390/v12101138

Characterization of Novel Lytic Bacteriophages of Achromobacter marplantensis Isolated from a Pneumonia Patient
Cited by: 6
Author(s): Hiu Tat Chan, Heng Ku, Ying Ping Low, Teagan L. Brown, Steven Batinovic, Mwila Kabwe, Steve Petrovski, Joseph Tucci
Software Mentions: 1
Published: about 4 years ago

10.3897/zookeys.209.3119

The development of a digitising service centre for natural history collections
Cited by: 22
Author(s): Riitta Tegelberg, Jaana Haapala, Tero Mononen, Mika Pajari, Hannu Saarenmaa
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.1924

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone
Cited by: 71
Author(s): Claudia Lüke, Daan R. Speth, Martine A. R. Kox, Laura Villanueva, Mike S. M. Jetten
Software Mentions: 1
Published: over 8 years ago

10.1098/rstb.2015.0336

Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches
Cited by: 76
Author(s): Rebecca Yahr, Conrad L. Schoch, Bryn T. M. Dentinger
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1006467

Allelic Variation in CXCL16 Determines CD3+ T Lymphocyte Susceptibility to Equine Arteritis Virus Infection and Establishment of Long-Term Carrier State in the Stallion
Cited by: 19
Author(s): Sanjay Sarkar, Ernest Bailey, Yun Young Go, R. Frank Cook, Theodore S. Kalbfleisch, John E. Eberth, R. Lakshman Chelvarajan, Kathleen M. Shuck, Sergey Artiushin, Peter J. Timoney, Udeni B. R. Balasuriya
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0163572

The Lipopolysaccharide-Induced Metabolome Signature in Arabidopsis thaliana Reveals Dynamic Reprogramming of Phytoalexin and Phytoanticipin Pathways
Cited by: 29
Author(s): Tarryn Finnegan, Paul A. Steenkamp, Lizelle A. Piater, Ian A. Dubery
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0129454

Dissemination of NDM-1-Producing Enterobacteriaceae Mediated by the IncX3-Type Plasmid
Cited by: 33
Author(s): Qing Yang, Lanfang Fang, Ying Fu, Xiaoxing Du, Yuqin Shen, Yunsong Yu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0087832

Coexistence in Field Samples of Two Variants of the Infectious Salmon Anemia Virus: A Putative Shift to Pathogenicity
Cited by: 14
Author(s): Constanza Cárdenas, Marisela Carmona, Alicia Gallardo, Álvaro Labra, Sergio H. Marshall
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0155888

Circulating Extracellular RNA Markers of Liver Regeneration
Cited by: 12
Author(s): Irene K. Yan, Xue Wang, Yan W. Asmann, Hiroaki Haga, Tushar Patel
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0107682

The Functional Potential of Microbial Communities in Hydraulic Fracturing Source Water and Produced Water from Natural Gas Extraction Characterized by Metagenomic Sequencing
Cited by: 50
Author(s): Arvind Murali Mohan, Kyle Bibby, Daniel Lipus, Richard Hammack, Kelvin B. Gregory
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0147511

Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii
Cited by: 20
Author(s): John Fosu-Nyarko, Paul Nicol, Fareeha Naz, Reetinder Gill, Michael G. K. Jones
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0146422

Predominance of Single Prophage Carrying a CRISPR/cas System in “Candidatus Liberibacter asiaticus” Strains in Southern China
Cited by: 37
Author(s): Zheng Zhang, Minli Bao, Fengnian Wu, Jianchi Chen, Xiaoling Deng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0080428

Planar Quadrature RF Transceiver Design Using Common-Mode Differential-Mode (CMDM) Transmission Line Method for 7T MR Imaging
Cited by: 9
Author(s): Ye Li, Baiying Yu, Yong Pang, Daniel B. Vigneron, Xiaoliang Zhang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0109571

Evidence of Carbon Fixation Pathway in a Bacterium from Candidate Phylum SBR1093 Revealed with Genomic Analysis
Cited by: 14
Author(s): Zhiping Wang, Feng Guo, Lili Liu, Tong Zhang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0233076

Genome-wide identification and characterization of microRNAs by small RNA sequencing for low nitrogen stress in potato
Cited by: 32
Author(s): Jagesh Kumar Tiwari, Tanuja Buckseth, Rasna Zinta, Aastha Saraswati, Rajesh Kumar Singh, Shashi Rawat, S. K. Chakrabarti
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0194481

Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana
Cited by: 31
Author(s): Stefan P. W. de Vries, Moses Vurayai, Mark A. Holmes, Shefali Gupta, Michael Bateman, David M. Goldfarb, Duncan J. Maskell, Maitshwarelo Ignatius Matsheka, A. Grant
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0091941

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome
Cited by: 322
Author(s): Martin J. Sergeant, Chrystala Constantinidou, Tristan A Cogan, M.R. Bedford, Charles W. Penn, Mark J. Pallen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0135251

Involvement of Antizyme Characterized from the Small Abalone Haliotis diversicolor in Gonadal Development
Cited by: 5
Author(s): Weidong Li, Min Huang, lü Wen-Gang, Xiao Chen, Minghui Shen, Xiangmin Li, Rongxia Wang, Caihuan Ke
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0095533

Analysis on the Relevance of Asthma Susceptibility with the Alteration of Integrin β 4 Expression
Cited by: 11
Author(s): Yang Xiang, Xiaoyan Zhou, Yurong Tan, Meiling Tan, Huijun Liu, Chi Liu, Xiangping Qu, Xiaoqun Qin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0109835

Exploring the Genes of Yerba Mate (Ilex paraguariensis A. St.-Hil.) by NGS and De Novo Transcriptome Assembly
Cited by: 18
Author(s): Humberto Julio Debat, Mauro Grabiele, Patricia Mabel Aguilera, Rosana Elizabeth Bubillo, Mónica Beatriz Otegui, Daniel Adrián Ducasse, Pedro Darío Zapata, Dardo A. Martí
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.1204

Reliable molecular identification of nine tropical whitefly species
Cited by: 18
Author(s): Tatiana M. Ovalle, Soroush Parsa, María Paz Hernández, Luís Augusto Becerra López-Lavalle
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2014.00348

Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes
Cited by: 38
Author(s): Ali R. Ali, Caird E. Rexroad, Gary H. Thorgaard, Jianbo Yao, Mohamed Salem
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2019.01744

Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya
Cited by: 45
Author(s): Jitesh Kumar, Nitish Sharma, Girija Kaushal, Samurailatpam Sanjukta, Dinabandhu Sahoo, K. Amit, Sudhir P. Singh
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.741406

Long-Term Intrahost Evolution of Staphylococcus aureus Among Diabetic Patients With Foot Infections
Cited by: 7
Author(s): Jean‐Philippe Lavigne, Michel Hosny, Catherine Dunyach-Rémy, Adeline Boutet-Dubois, Sophie Schuldiner, Nicolas Cellier, Alex Yahiaoui-Martinez, Virginie Molle, Bernard La Scola, Hélène Marchandin, Albert Sotto
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2018.00612

Fungal Diversity and Community Composition of Culturable Fungi in Stanhopea trigrina Cast Gibberellin Producers
Cited by: 37
Author(s): Sonia Salazar-Cerezo, Nancy Martínez-Montiel, María del Carmen Cruz-López, Rebeca D. Martínez-Contreras
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00893

Time-Resolved Tracking of Mutations Reveals Diverse Allele Dynamics during Escherichia coli Antimicrobial Adaptive Evolution to Single Drugs and Drug Pairs
Cited by: 9
Author(s): Rachel A. Hickman, Christian Munck, Morten Otto Alexander Sommer
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.01668

Determination of Geochemical Bio-Signatures in Mars-Like Basaltic Environments
Cited by: 13
Author(s): Karen Olsson-Francis, Victoria K. Pearson, Elisabeth Steer, S. P. Schwenzer
Software Mentions: 1
Published: about 7 years ago

10.3389/fmolb.2020.00047

Systems Biology Integration and Screening of Reliable Prognostic Markers to Create Synergies in the Control of Lung Cancer Patients
Cited by: 11
Author(s): Aman Chandra Kaushik, Aamir Mehmood, Dong‐Qing Wei, Xiaofeng Dai
Software Mentions: 1
Published: over 4 years ago

10.3389/fninf.2012.00030

CoCoMac 2.0 and the future of tract-tracing databases
Cited by: 128
Author(s): Rembrandt Bakker, Thomas Wachtler, Markus Diesmann
Software Mentions: 1
Published: almost 13 years ago

10.3389/fnins.2021.699631

Decoding Neural Activity in Sulcal and White Matter Areas of the Brain to Accurately Predict Individual Finger Movement and Tactile Stimuli of the Human Hand
Cited by: 5
Author(s): Chad Bouton, Nikunj A. Bhagat, Santosh Chandrasekaran, Jose L. Herrero, Noah Markowitz, Elizabeth Espinal, Joo-Won Kim, Richard Ramdeo, Junqian Xu, Matthew F. Glasser, Stephan Bickel, Ashesh D. Mehta
Software Mentions: 1
Published: over 3 years ago

10.3389/fphys.2016.00574

Gene Expression Dynamics in Major Endocrine Regulatory Pathways along the Transition from Solitary to Social Life in a Bumblebee, Bombus terrestris
Cited by: 40
Author(s): Pavel Jedlička, Ulrich Ernst, Alena Votavová, Robert Hanus, Irena Valterová
Software Mentions: 1
Published: almost 8 years ago

Projects: pypi: workbench

Papers Mentioning workbench 139