Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: tagtog

https://packages.ecosyste.ms/registries/pypi.org/packages/tagtog

Python library & CLI to interact with tagtog APIs & datasets
2 versions
Latest release: almost 4 years ago
13 downloads last month

Papers Mentioning tagtog 9

10.1093/bib/bbz130

An extensive review of tools for manual annotation of documents
Cited by: 62
Author(s): Mariana Neves, Jurica Ševa
Software Mentions: 6
Published: almost 5 years ago

<i>nala</i>: text mining natural language mutation mentions
Cited by: 18
Author(s): Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata Satagopam, Burkhard Rost
Software Mentions: 4
Published: over 7 years ago

10.1093/database/bau048

Egas: a collaborative and interactive document curation platform
Cited by: 21
Author(s): David Campos, Jóni Lourenço, Sérgio Matos, José Luís Oliveira
Software Mentions: 2
Published: over 10 years ago

10.1093/database/baw096

Mining clinical attributes of genomic variants through assisted literature curation in Egas
Cited by: 6
Author(s): Sérgio Matos, David Campos, Renato P. Pinho, Raquel M. Silva, Matthew Mort, David Neil Cooper, José Luís Oliveira
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-018-2021-9

LocText: relation extraction of protein localizations to assist database curation
Cited by: 80
Author(s): Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost
Software Mentions: 2
Published: almost 7 years ago

10.1093/database/bau070

Text-mining-assisted biocuration workflows in Argo
Cited by: 21
Author(s): Rafał Rak, Riza Theresa Batista-Navarro, Andrew Rowley, Jacob Carter, Sophia Ananiadou
Software Mentions: 1
Published: almost 11 years ago

10.1186/1753-6561-9-S5-A4

Linked annotations: a middle ground for manual curation of biomedical databases and text corpora
Cited by: 6
Author(s): Tatyana Goldberg, Shrikant Vinchurkar, Juan Miguel Cejuela, Lars Juhl Jensen, Burkhard Rost
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0216913

Using distant supervision to augment manually annotated data for relation extraction
Cited by: 21
Author(s): Peng Su, Gang Li, Cathy H. Wu, K. Vijay‐Shanker
Software Mentions: 1
Published: over 5 years ago

10.1093/database/bau033

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles
Cited by: 45
Author(s): Juan Miguel Cejuela, Peter McQuilton, Laura Ponting, Steven J Marygold, Raymund Stefancsik, Gillian Millburn, Burkhard Rost
Software Mentions: 1
Published: over 10 years ago