Ecosyste.ms: Papers

10.1172/jci.insight.138970

Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program
Cited by: 21
Author(s): Farah Hasan, Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee
Software Mentions: 10
Published: over 3 years ago

10.1186/s12864-020-06971-7

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis
Cited by: 44
Author(s): Asimenia Gavriilidou, Johanna Gutleben, Dennis Versluis, Francesca Forgiarini, Mark W. J. van Passel, Colin J. Ingham, Hauke Smidt, Detmer Sipkema
Software Mentions: 8
Published: over 4 years ago

10.3389/fonc.2020.01591

An Ultrasound Radiomics Nomogram for Preoperative Prediction of Central Neck Lymph Node Metastasis in Papillary Thyroid Carcinoma
Cited by: 38
Author(s): Shichong Zhou, Tong‐Tong Liu, Jin Zhou, Yao Qi Huang, Yi Guo, Jinhua Yu, Yuan‐Yuan Wang, Cai Chang
Software Mentions: 7
Published: about 4 years ago

10.1038/s41597-020-0544-1

Long-term monitoring of the Iberian ibex population in the Sierra Nevada of the southeast Iberian Peninsula
Cited by: 7
Author(s): José E. Granados, Andrea Ros-Candeira, Antonio J. Pérez‐Luque, Ricardo Moreno-Llorca, Francisco Javier Cano-Manuel, Paulino Fandós, Ramón C. Soriguer, José Espinosa Cerrato, Jesús M. Pérez, Blanca Cecilia Ramos, Regino Zamora
Software Mentions: 7
Published: over 4 years ago

10.1186/1471-2105-10-201

A-MADMAN: Annotation-based microarray data meta-analysis tool
Cited by: 35
Author(s): Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi
Software Mentions: 6
Published: over 15 years ago

10.1128/mBio.02146-20

Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System
Cited by: 20
Author(s): Charlotte B. Francoeur, Lily Khadempour, Rolando D. Moreira-Soto, Kirsten Gotting, Adam J. Book, Adrián A. Pinto‐Tomás, Ken Keefover‐Ring, Cameron R. Currie
Software Mentions: 6
Published: about 4 years ago

10.1186/s13321-020-0415-y

The C++ programming language in cheminformatics and computational chemistry
Cited by: 13
Author(s): Dmitrii N. Rassokhin
Software Mentions: 6
Published: almost 5 years ago

10.1007/s13205-016-0363-4

UpCoT: an integrated pipeline tool for clustering upstream DNA sequences of orthologous genes in prokaryotic genomes
Cited by: 0
Author(s): P. V. Parvati Sai Arun, Jogadhenu S. S. Prakash
Software Mentions: 5
Published: almost 9 years ago

10.1002/advs.202001402

TRADES: Targeted RNA Demethylation by SunTag System
Cited by: 25
Author(s): Jing Mo, Zonggui Chen, Shanshan Qin, Shu Li, Chuangang Liu, Lu Zhang, Ruoxi Ran, Ying Kong, Fang Wang, Song-Mei Liu, Yu Zhou, Xiaolian Zhang, Xiaocheng Weng, Xiang Zhou
Software Mentions: 5
Published: over 4 years ago

10.1186/gb-2014-15-3-r41

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
Cited by: 205
Author(s): Alice Pajoro, Pedro Madrigal, Jose M. Muiño, José Tomás Matus, Jiaxin Jin, Martín A. Mecchia, Juan M. Debernardi, Javier F. Palatnik, Salma Balazadeh, Muhammad Arif, Diarmuid S. Ó’Maoiléidigh, Frank Wellmer, Paweł Krajewski, José Luis Riechmann, Gerco C. Angenent, Kerstin Kaufmann
Software Mentions: 5
Published: almost 11 years ago

10.3390/biom11020291

Determination of Genotoxicity Attributed to Diesel Exhaust Particles in Normal Human Embryonic Lung Cell (WI-38) Line
Cited by: 4
Author(s): Joong Won Lee, Hee Jae Lee, Young Joo Lee, Yong Beom Lim, Woo Jong Sim, Ji Hye Jang, Hye Ryeon Heo, Hyunwoo Lim, Ji Won Jung, Jin Sik Kim
Software Mentions: 5
Published: almost 4 years ago

10.18632/aging.102399

DNA methylation profile is a quantitative measure of biological aging in children
Cited by: 23
Author(s): Xiaohui Wu, Weidan Chen, Fangqin Lin, Qingsheng Huang, Jiayong Zhong, Huan Gao, Yanyan Song, Huiying Liang
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pgen.1008511

JMJD6 participates in the maintenance of ribosomal DNA integrity in response to DNA damage
Cited by: 11
Author(s): Jérémie Fages, Catherine Chailleux, Jonathan Humbert, Suk-Min Jang, Jérémy Loehr, Jean-Philippe Lambert, Jacques Côté, Didier Trouche, Yvan Canitrot
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0049475

Characteristics and Predictive Value of Blood Transcriptome Signature in Males with Autism Spectrum Disorders
Cited by: 139
Author(s): Sek Won Kong, Christin Collins, Yuko Shimizu‐Motohashi, Ingrid A. Holm, Malcolm Campbell, In Hee Lee, Stephanie J. Brewster, Ellen Hanson, Heather K. Harris, Kathryn R. Lowe, Adrianna Saada, Andrea L. Mora, Kimberly A. Madison, Rachel Hundley, Jessica Egan, Jill McCarthy, Alal Eran, Michal Galdzicki, Leonard Rappaport, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 5
Published: almost 12 years ago

10.1186/s12919-016-0057-2

Association of rare haplotypes on ULK4 and MAP4 genes with hypertension
Cited by: 11
Author(s): Ananda S. Datta, Yuan Zhang, Lei Zhang, Swati Biswas
Software Mentions: 4
Published: about 8 years ago

10.1186/s12864-019-6294-9

Refining modules to determine functionally significant clusters in molecular networks
Cited by: 2
Author(s): Rama Kaalia, Jagath C. Rajapakse
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcimb.2021.698146

L-Arabinose Transport and Metabolism in Salmonella Influences Biofilm Formation
Cited by: 9
Author(s): Erin M. Vasicek, Lindsey O’Neal, Matthew R. Parsek, James Fitch, Peter White, John S. Gunn
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.01975

Functional Genomic Analyses of Exopolysaccharide-Producing Streptococcus thermophilus ASCC 1275 in Response to Milk Fermentation Conditions
Cited by: 8
Author(s): Qinglong Wu, Hung Chu, Aparna Padmanabhan, Nagendra P. Shah
Software Mentions: 4
Published: about 5 years ago

10.1016/j.watres.2019.06.075

Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters
Cited by: 93
Author(s): Marcos Quintela-Baluja, Mohamed Abouelnaga, Jesús L. Romalde, Jian‐Qiang Su, Yongjie Yu, Mariano Gomez-Lopez, Barth F. Smets, Yong‐Guan Zhu, David W. Graham
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000358

Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen
Cited by: 30
Author(s): Teresa R. O’Meara, Matthew J. O’Meara, Elizabeth J. Polvi, Mohammad Reza Pourhaghighi, Sean D. Liston, Zhen‐Yuan Lin, Amanda O. Veri, Andrew Emili, Anne‐Claude Gingras, Leah E. Cowen
Software Mentions: 4
Published: over 5 years ago

10.1186/s12920-014-0071-z

PD_NGSAtlas: a reference database combining next-generation sequencing epigenomic and transcriptomic data for psychiatric disorders
Cited by: 10
Author(s): Zheng Zhao, Yongsheng Li, Hong Chen, Jianping Lu, Peter M. Thompson, Juan Chen, Zishan Wang, Juan Xu, Xu Chun, Xia Li
Software Mentions: 3
Published: almost 10 years ago

10.3390/s17051059

Vulnerability- and Diversity-Aware Anonymization of Personally Identifiable Information for Improving User Privacy and Utility of Publishing Data
Cited by: 24
Author(s): Abdul Majeed, Farman Ullah, Sungchang Lee
Software Mentions: 3
Published: over 7 years ago

10.1186/s13326-017-0174-5

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Cited by: 40
Author(s): Viktor Senderov, Kiril Simov, Nico M. Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert Morris, Lyubomir Penev
Software Mentions: 3
Published: almost 7 years ago

10.3390/s150204470

Architecture of a Service-Enabled Sensing Platform for the Environment
Cited by: 23
Author(s): Alexander Kotsev, Francesco Pantisano, Sven Schade, Simon Jirka
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12870-015-0478-5

New insights into the evolutionary history of plant sorbitol dehydrogenase
Cited by: 22
Author(s): Yuping Jia, D. Wong, Crystal Sweetman, John B. Bruning, Christopher M. Ford
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-46094-y

Human Corneal Expression of SLC4A11, a Gene Mutated in Endothelial Corneal Dystrophies
Cited by: 23
Author(s): Deepti Malhotra, Sampath K. Loganathan, Anthony M. Chiu, Chris M. Lukowski, Joseph R. Casey
Software Mentions: 3
Published: over 5 years ago

10.1111/his.13883

Measuring the depth of invasion in vulvar squamous cell carcinoma: interobserver agreement and pitfalls
Cited by: 7
Author(s): Anne-Floor W. Pouwer, Peter Bult, Irene Otte, Michiel van der Brand, Judith van der Horst, Laurette J V Harterink, Koen K. Van de Vijver, Esther Guerra, Riena P. Aliredjo, Steven L. Bosch, Johanna M. M. Grefte, Saskia F. Zomer, Harry Hollema, Barry de Heus, Saphira Satumalaij, Patricia C. Ewing‐Graham, Joanna IntHout, Joanne A. de Hullu, Johan Bulten
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2019.00269

Dosiomics: Extracting 3D Spatial Features From Dose Distribution to Predict Incidence of Radiation Pneumonitis
Cited by: 80
Author(s): Bin Liang, Hui Yan, Yuan Tian, Xinyuan Chen, Lingling Yan, Tao Zhang, Zongmei Zhou, Lvhua Wang, Jianrong Dai
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2164-15-1070

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
Cited by: 93
Author(s): Teija Ojala, Matti Kankainen, Joana Castro, Nuno Cerca, Sanna Edelman, Benita Westerlund-Wikström, Lars Paulín, Liisa Holm, Petri Auvinen
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-019-5833-8

Extensive genome analysis of Coxiella burnetii reveals limited evolution within genomic groups
Cited by: 26
Author(s): Claudia Hemsley, Paul O’Neill, Angela Essex-Lopresti, Isobel H. Norville, Tim Atkins, Richard W. Titball
Software Mentions: 3
Published: over 5 years ago

10.1007/s10669-020-09795-8

Reviewing qualitative research approaches in the context of critical infrastructure resilience
Cited by: 35
Author(s): R. Cantelmi, Giulio Di Gravio, Riccardo Patriarca
Software Mentions: 3
Published: almost 4 years ago

10.3390/e23020162

A New Deep Dual Temporal Domain Adaptation Method for Online Detection of Bearings Early Fault
Cited by: 12
Author(s): Wentao Mao, Bin Sun, Liyun Wang
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-8-441

A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
Cited by: 8
Author(s): Konstantin Popadin, Leila Mamirova, Fyodor A. Kondrashov
Software Mentions: 3
Published: about 17 years ago

10.1534/g3.118.200815

Dosage Compensation and Gene Expression of the X Chromosome in Sheep
Cited by: 9
Author(s): Jianan Duan, Kaleigh Flock, Nathanial Jue, Mingyuan Zhang, A. K. Jones, Sahar Al Seesi, Ion Măndoiu, S. M. Pillai, M. L. Hoffman, Rachel J. O’Neill, S. A. Zinn, Kristen E Govoni, Sarah Reed, Hesheng Jiang, Zongliang Jiang, X. Cindy Tian
Software Mentions: 3
Published: almost 6 years ago

10.1093/gbe/evy146

Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism
Cited by: 15
Author(s): Igor B. Rogozin, E. Michael Gertz, Pavel V. Baranov, Eugenia Poliakov, Alejandro A. Schäffer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-016-1227-y

PGen: large-scale genomic variations analysis workflow and browser in SoyKB
Cited by: 25
Author(s): Yang Liu, Saad Khan, Juexin Wang, Mats Rynge, Yuanxun Zhang, Shuai Zeng, Shiyuan Chen, João Vitor Maldonado dos Santos, Babu Valliyodan, Prasad Calyam, Nirav Merchant, Henry T. Nguyen, Dong Xu, Trupti Joshi
Software Mentions: 3
Published: about 8 years ago

10.3389/fnbeh.2013.00037

Microarray analyses reveal novel targets of exercise-induced stress resistance in the dorsal raphe nucleus
Cited by: 13
Author(s): Alice B. Loughridge, Benjamin N. Greenwood, Heidi E.W. Day, Matthew B. McQueen, Monika Fleshner
Software Mentions: 3
Published: almost 12 years ago

10.1093/conphys/coab050

Decreasing glucocorticoid levels towards the expansion front suggest ongoing expansion in a terrestrial mammal
Cited by: 1
Author(s): Alexandre F. Azevedo, Liam D. Bailey, Victor Bandeira, Carlos Fonseca, Jella Wauters, Katarina Jewgenow
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.jrp.2016.06.022

The personality of U.S. states: Stability from 1999 to 2015
Cited by: 71
Author(s): Lorien G. Elleman, David M Condon, Sarah E. Russin, William Revelle
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40168-021-01029-6

Xylitol enhances synthesis of propionate in the colon via cross-feeding of gut microbiota
Cited by: 45
Author(s): Shasha Xiang, Kun Ye, Mian Li, Jian Ying, Huanhuan Wang, Jianzhong Han, Lihua Shi, Jie Xiao, Yubiao Shen, Xiao Feng, Xuan Bao, Yiqing Zheng, Guofu Yin, Yalin Zhang, Chang Liu, Jie Chen, Yuewen Chen, Shiping Tian, Xuan Zhu
Software Mentions: 3
Published: over 3 years ago

10.1038/s42003-020-01384-4

Multiplexed quantitative proteomics provides mechanistic cues for malaria severity and complexity
Cited by: 15
Author(s): Vipin Kumar, Ray S, Shalini Aggarwal, Deeptarup Biswas, Manali Jadhav, Radha Yadav, Sanjeev Sabnis, Soumaditya Banerjee, Arunansu Talukdar, Sanjay Kumar Kochar, Suvin Shetty, Kunal Sehgal, Swati Patankar, Sanjeeva Srivastava
Software Mentions: 3
Published: about 4 years ago

10.1186/s12942-018-0130-3

Quantifying multi-dimensional attributes of human activities at various geographic scales based on smartphone tracking
Cited by: 9
Author(s): Xiaolu Zhou, Dongying Li
Software Mentions: 2
Published: over 6 years ago

10.3390/s21134290

Is Satellite Ahead of Terrestrial in Deploying NOMA for Massive Machine-Type Communications?
Cited by: 4
Author(s): A. Arcidiacono, Daniele Finocchiaro, R. De Gaudenzi, Oscar del Rio-Herrero, Stefano Cioni, Marco Andrenacci, Riccardo Andreotti
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph15102280

Associations of Physical Behaviours and Behavioural Reallocations with Markers of Metabolic Health: A Compositional Data Analysis
Cited by: 41
Author(s): Gregory J H Biddle, Charlotte L. Edwardson, Joseph Henson, Melanie J. Davies, Kamlesh Khunti, Alex V. Rowlands, Thomas Yates
Software Mentions: 2
Published: about 6 years ago

10.3390/s19183908

On-Site 4-in-1 Alignment: Visualization and Interactive CAD Model Retrofitting Using UAV, LiDAR’s Point Cloud Data, and Video
Cited by: 9
Author(s): B N Pavan Kumar, Ashok Kumar Patil, B Chethana, Young Ho Chai
Software Mentions: 2
Published: about 5 years ago

10.3390/s150101825

Inertial Sensor Self-Calibration in a Visually-Aided Navigation Approach for a Micro-AUV
Cited by: 21
Author(s): Francisco Bonin‐Font, Miquel Massot-Campos, Pep Lluis Negre-Carrasco, Gabriel Oliver-Codina, Joan Pau Beltrán
Software Mentions: 2
Published: almost 10 years ago

10.3390/s21113804

Development of a Basic Educational Kit for Robotic System with Deep Neural Networks
Cited by: 3
Author(s): Momomi Kanamura, Kanata Suzuki, Yuki Suga, Tetsuya Ogata
Software Mentions: 2
Published: over 3 years ago

10.1186/1742-2094-9-5

NADPH oxidase and reactive oxygen species contribute to alcohol-induced microglial activation and neurodegeneration
Cited by: 211
Author(s): Liya Qin, Fulton T. Crews
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-018-30429-2

Bifidobacterium adolescentis is intrinsically resistant to antitubercular drugs
Cited by: 23
Author(s): Dhanashree Lokesh, Raman Parkesh, Kammara Rajagopal
Software Mentions: 2
Published: over 6 years ago

10.1038/srep45195

Several microRNAs could predict survival in patients with hepatitis B-related liver cancer
Cited by: 19
Author(s): Zhen Ye, Xinghui Zhao, Chao Wu, Yi Zhao, Jinwen Chen, Ruifang Gao, Chao Zhang, Min Zhao, Changyuan Guo, Yan Fang, Lingfang Du, Long Shen, Wenzhi Shen, Xin Luo, Rong Xiang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-16069-y

Elevation in tropical sky islands as the common driver in structuring genes and communities of freshwater organisms
Cited by: 10
Author(s): Morgan Gueuning, Tomasz Suchan, Sereina Rutschmann, Jean‐Luc Gattolliat, Jamsari Jamsari, Al Ihsan Kamil, Camille Pitteloud, Sven Buerki, Michael Balke, Michel Sartori, Nadir Alvarez
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41597-019-0266-4

Travel times to hospitals in Australia
Cited by: 17
Author(s): Sebastiano Barbieri, Louisa Jorm
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-10-160

IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico
Cited by: 27
Author(s): Tzong‐Yuan Wu, Chih‐Wei Hsieh, Jun-Jie Hong, Chung-Yung Chen, Yuh-Show Tsai
Software Mentions: 2
Published: over 15 years ago

10.1038/s41598-018-27209-3

Lung cellular senescence is independent of aging in a mouse model of COPD/emphysema
Cited by: 44
Author(s): Kahkashan Rashid, Isaac K. Sundar, Janice Gerloff, Dongmei Li, Irfan Rahman
Software Mentions: 2
Published: over 6 years ago

10.1155/2014/808613

A Filter-Mediated Communication Model for Design Collaboration in Building Construction
Cited by: 2
Author(s): Jaewook Lee, Yun Seong Jeong, Minho Oh, Seung Wan Hong
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12883-021-02101-2

Physical activity profiles in Parkinson’s disease
Cited by: 14
Author(s): Philip Rosen, María Hagströmer, Erika Franzén, Breiffni Leavy
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.redox.2021.101905

Identification of proteins and cellular pathways targeted by 2-nitroimidazole hypoxic cytotoxins
Cited by: 4
Author(s): Faisal Bin Rashed, Alexandru Cezar Stoica, Dawn Macdonald, Hassan R. H. Elsaidi, Carolynne Ricardo, Bhumi Bhatt, Jack Moore, Diana Diaz‐Dussan, Nirilanto Ramamonjisoa, Yvonne M. Mowery, Sambasivarao Damaraju, Richard P. Fahlman, Piyush Kumar, Michael Weinfeld
Software Mentions: 2
Published: over 3 years ago

10.1002/acm2.12894

Integration of automation into an existing clinical workflow to improve efficiency and reduce errors in the manual treatment planning process for total body irradiation (TBI)
Cited by: 5
Author(s): D Thomas, Brian W. Miller, Rachel Rabinovitch, Sarah A. Milgrom, Brian D. Kavanagh, Quentin Diot, Moyed Miften, Laura Schubert
Software Mentions: 2
Published: over 4 years ago

10.1073/pnas.1922650117

Sperm proteins SOF1, TMEM95, and SPACA6 are required for sperm−oocyte fusion in mice
Cited by: 101
Author(s): Taichi Noda, Yonggang Lu, Yoshitaka Fujihara, Seiya Oura, Takayuki Koyano, Sumire Kobayashi, Martin M. Matzuk, Masahito Ikawa
Software Mentions: 2
Published: over 4 years ago

10.1038/srep43518

A Systematic Approach to Time-series Metabolite Profiling and RNA-seq Analysis of Chinese Hamster Ovary Cell Culture
Cited by: 26
Author(s): Han-Hsiu Hsu, Michihiro Araki, M Mochizuki, Yutaka Hori, Masahiro Morimoto, Prihardi Kahar, Takeshi Yoshida, Tomohisa Hasunuma, Akihiko Kondo
Software Mentions: 2
Published: over 7 years ago

10.1186/s40064-016-3670-7

Software project management tools in global software development: a systematic mapping study
Cited by: 18
Author(s): Saad Yasser Chadli, Ali Idri, Joaquín Nicolás, José Luis Fernández-Alemán, Juan M. Carrillo de Gea, Ambrosio Toval
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-020-70664-0

Marker aided introgression of ‘Saltol’, a major QTL for seedling stage salinity tolerance into an elite Basmati rice variety ‘Pusa Basmati 1509’
Cited by: 28
Author(s): Ashutosh Kumar Yadav, Aruna Kumar, Nitasha Grover, Ranjith Kumar Ellur, S. Gopala Krishnan, Haritha Bollinedi, Prolay Kumar Bhowmick, K. K. Vinod, M. Nagarajan, S. L. Krishnamurthy, Ashok Kumar Singh
Software Mentions: 2
Published: about 4 years ago

10.18632/oncotarget.21947

B-CAN: a resource sharing platform to improve the operation, visualization and integrated analysis of TCGA breast cancer data
Cited by: 3
Author(s): Canhong Wen, Shao-Min Ou, Xinying Guo, Chen-Feng Liu, Yan-Bo Shen, Na You, Wentong Cai, Wen‐Jun Shen, Xueqin Wang, Hao Tan
Software Mentions: 2
Published: about 7 years ago

10.1186/gb-2014-15-1-r14

Dissecting the expression landscape of RNA-binding proteins in human cancers
Cited by: 195
Author(s): Bobak D. Kechavarzi, Sarath Chandra Janga
Software Mentions: 2
Published: almost 11 years ago

10.14336/AD.2020.0224

The Mechanism of Downregulated Interstitial Fluid Drainage Following Neuronal Excitation
Cited by: 10
Author(s): Yuanyuan Li, Hongbin Han, Kuangyu Shi, Dehua Cui, Jun Yang, Ian Alberts, Lan Yuan, Guomei Zhao, Rui Wang, Xiao Jiang Cai, Ze Teng
Software Mentions: 2
Published: almost 5 years ago

10.3389/fped.2019.00224

Mother's Own Milk and Bronchopulmonary Dysplasia: A Systematic Review and Meta-Analysis
Cited by: 36
Author(s): Eduardo Villamor-Martínez, Maria Pierro, Giacomo Cavallaro, Fabio Mosca, Eduardo Villamor
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-4317-y

Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle
Cited by: 22
Author(s): Ke Zhao, Y. H. Chen, G.B. Penner, M. Oba, Le Luo Guan
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798320016368

Macromolecular crystallography using microcrystal electron diffraction
Cited by: 9
Author(s): Max T. B. Clabbers, Hongyi Xu
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2020.01784

Effects of the Oncoprotein PAX3-FOXO1 on Modulation of Exosomes Function and Protein Content: Implications on Oxidative Stress Protection and Enhanced Plasticity
Cited by: 3
Author(s): Assil Fahs, Farah Ramadan, Farah Ghamloush, Abeer J. Ayoub, Ahmad Faraz, Firas Kobeissy, Yehia Mechref, Jingkun Zhao, Rui Zhu, Nader Hussein, Raya Saab, Sandra E. Ghayad
Software Mentions: 2
Published: about 4 years ago

10.3389/fbioe.2020.01028

Evaluation of the Enzymatic Arsenal Secreted by Myceliophthora thermophila During Growth on Sugarcane Bagasse With a Focus on LPMOs
Cited by: 12
Author(s): Maria Angela B. Grieco, Mireille Haon, Sacha Grisel, Ana Lúcia Oliveira-Carvalho, Augusto Vieira Magalhães, Russolina B. Zingali, Nei Pereira, Jean‐Guy Berrin
Software Mentions: 2
Published: about 4 years ago

10.3389/fbioe.2018.00094

Mobile, Game-Based Training for Myoelectric Prosthesis Control
Cited by: 29
Author(s): Brent Winslow, Mitchell Ruble, Zachary Huber
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-16-S10-S2

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
Cited by: 52
Author(s): Sampo Pyysalo, Tomoko Ohta, Rafał Rak, Andrew Rowley, Hong Woo Chun, Sung Jae Jung, Sung Pil Choi, Jun’ichi Tsujii, Sophia Ananiadou
Software Mentions: 2
Published: over 9 years ago

10.1289/ehp.10414

Prenatal Exposure to Tetrachloroethylene-Contaminated Drinking Water and the Risk of Adverse Birth Outcomes
Cited by: 42
Author(s): Ann Aschengrau, Janice Weinberg, S. Rogers, Lisa G. Gallagher, Michael Winter, Verónica M. Vieira, Thomas F. Webster, David Ozonoff
Software Mentions: 2
Published: over 16 years ago

10.1111/eva.12611

Harvesting changes mating behaviour in European lobster
Cited by: 33
Author(s): Tonje Knutsen Sørdalen, Kim Tallaksen Halvorsen, Hugo B. Harrison, Charlie D. Ellis, Leif Asbjørn Vøllestad, Halvor Knutsen, Even Moland, Esben Moland Olsen
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: over 8 years ago

10.1038/s41438-020-00410-0

Perception of unrelated microbe-associated molecular patterns triggers conserved yet variable physiological and transcriptional changes in Brassica rapa ssp. pekinensis
Cited by: 6
Author(s): Wanhui Kim, Maxim Prokchorchik, Yuan Tian, Seulgi Kim, Hyelim Jeon, Cécile Segonzac
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0239816

Predictors of academic efficacy and dropout intention in university students: Can engagement suppress burnout?
Cited by: 42
Author(s): João Marôco, Hugo Assunção, Heidi Harju-Luukkainen, Su-Wei Lin, Pou-seong Sit, Kwok-cheung Cheung, Benvindo Felismino Samuel Maloa, Ivana Stepanović Ilić, Thomas J. Smith, Juliana Álvares Duarte Bonini Campos
Software Mentions: 2
Published: about 4 years ago

10.3390/cells9040911

Targeted PARP Inhibition Combined with FGFR1 Blockade is Synthetically Lethal to Malignant Cells in Patients with Pancreatic Cancer
Cited by: 6
Author(s): Shiue‐Wei Lai, Oluwaseun Adebayo Bamodu, Jia Hong Chen, Alexander T.H. Wu, Wei Hwa Lee, Tsu Yi Chao, Chi Tai Yeh
Software Mentions: 2
Published: over 4 years ago

10.1093/database/bay036

Signalling maps in cancer research: construction and data analysis
Cited by: 12
Author(s): Maria Kondratova, Nicolas Sompairac, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein
Software Mentions: 2
Published: almost 7 years ago

10.26508/lsa.201900603

Phenotypic proteomic profiling identifies a landscape of targets for circadian clock–modulating compounds
Cited by: 13
Author(s): Ray S, Radosław Lach, Kate J Heesom, Utham K. Valekunja, Vesela Encheva, Ambrosius P. Snijders, Akhilesh B. Reddy
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0158229

Hybrid Symbiotic Organisms Search Optimization Algorithm for Scheduling of Tasks on Cloud Computing Environment
Cited by: 54
Author(s): Abdullahi Mohammed, Md. Asri Ngadi
Software Mentions: 2
Published: over 8 years ago

10.1289/ehp.7145

Statistical Methods for Linking Health, Exposure, and Hazards
Cited by: 46
Author(s): Frances J. Mather, LuAnn White, Elizabeth Cullen Langlois, Charles Shorter, Christopher M. Swalm, Jeffrey G. Shaffer, William Hartley
Software Mentions: 2
Published: about 20 years ago

10.1371/journal.pone.0161662

Molecular Understanding of Growth Inhibitory Effect from Irradiated to Bystander Tumor Cells in Mouse Fibrosarcoma Tumor Model
Cited by: 16
Author(s): Sejal Desai, S Nishad, Hansa D. Yadav, Neena G. Shetake, Murali Mohan Sagar Balla, Amit Kumar, Pritha Ray, Anu Ghosh, Badri N. Pandey
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0238156

Compound 21, a two-edged sword with both DREADD-selective and off-target outcomes in rats
Cited by: 19
Author(s): Raphaël Goutaudier, Véronique Coizet, Carole Carcenac, Sébastien Carnicella
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0043313

Acyloxy Nitroso Compounds Inhibit LIF Signaling in Endothelial Cells and Cardiac Myocytes: Evidence That STAT3 Signaling Is Redox-Sensitive
Cited by: 34
Author(s): Carlos Zgheib, Mazen Kurdi, Fouad A. Zouein, Barak W. Gunter, Brian A. Stanley, Joe Zgheib, Damián G. Romero, S. Bruce King, Nazareno Paolocci, George W. Booz
Software Mentions: 2
Published: over 12 years ago

10.1097/MD.0000000000018827

Acupuncture and Moxibustion for restless legs syndrome
Cited by: 0
Author(s): Zhijun Huang, Qingqing Cao, Zhang Wen-chun, Wu Zhouhang, Jianlin Ren
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/9720387

Protective Effects of <i>Ligularia fischeri</i> and <i>Aronia melanocarpa</i> Extracts on Alcoholic Liver Disease (<i>In Vitro</i> and <i>In Vivo</i> Study)
Cited by: 7
Author(s): Chang-Won Pyun, Tae-Su Seo, Dae Jung Kim, Tae Woo Kim, Jung-Shik Bae
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0002945

Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome
Cited by: 242
Author(s): Ani Qu, Jennifer M. Brulc, Melissa K. Wilson, Bibiana Law, James R. Theoret, Lynn A. Joens, Michael E. Konkel, Florent E. Angly, Elizabeth A. Dinsdale, Robert A. Edwards, Karen E. Nelson, Bryan A. White
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0027550

In Vitro Grown Sheep Preantral Follicles Yield Oocytes with Normal Nuclear-Epigenetic Maturation
Cited by: 35
Author(s): Barbara Barboni, Valentina Russo, Sandra Cecconi, Valentina Curini, Alessia Colosimo, Maria Luigia A. Garofalo, Giulia Capacchietti, Oriana Di Giacinto, Mauro Mattioli
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0232082

Patient reported postoperative pain with a smartphone application: A proof of concept
Cited by: 7
Author(s): Bram Thiel, Marc B. Godfried, Elise C van Huizen, Bart C. Mooijer, Bouke A de Boer, Rover A A M van Mierlo, Jim van Os, Bart F. Geerts, Cor J. Kalkman
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0161453

Flow Cytometric Methods for Indirect Analysis and Quantification of Gametogenesis in Chlamydomonas reinhardtii (Chlorophyceae)
Cited by: 3
Author(s): Catherine E. Seed, Joseph L. Tomkins
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0081004

Development of NMDAR Antagonists with Reduced Neurotoxic Side Effects: a Study on GK11
Cited by: 8
Author(s): Delphine Vandame, Lauriane Ulmann, Marisa Teigell, Monica Prieto-Cappellini, Jacques Vignon, Alain Privat, Regino Perez‐Polo, Olivera Nešić, Hélène Hirbec
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0117066

Effects of City Expansion on Heat Stress under Climate Change Conditions
Cited by: 86
Author(s): Daniel Argüeso, Jason P. Evans, Andrew J. Pitman, Alejandro Di Luca
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13040-016-0096-2

Building a glaucoma interaction network using a text mining approach
Cited by: 5
Author(s): Maha Soliman, Olfa Nasraoui, Nigel G. F. Cooper
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.0030002

Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods
Cited by: 156
Author(s): Sergio E. Baranzini, Parvin Mousavi, Jordi Río, Stacy J. Caillier, Althea Stillman, Pablo Villoslada, Matthew M Wyatt, Manuel Comabella, Larry D. Greller, Roland Somogyi, Xavier Montalbán, Jorge R. Oksenberg
Software Mentions: 2
Published: almost 20 years ago

10.1002/acm2.12878

A novel and clinically useful dynamic conformal arc (DCA)‐based VMAT planning technique for lung SBRT
Cited by: 13
Author(s): Damodar Pokhrel, Justin Visak, Lana Sanford
Software Mentions: 2
Published: over 4 years ago

10.1007/s12253-019-00677-2

Inhibition of Metabolic Shift can Decrease Therapy Resistance in Human High-Grade Glioma Cells
Cited by: 13
Author(s): Gábor Petővári, Titanilla Dankó, Ildikó Krencz, Zoltán Hujber, Hajnalka Rajnai, Enikő Vetlényi, Regina Raffay, Judit Pápay, A. Jeney, Anna Sebestyén
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.0010024

Genome-Wide Requirements for Resistance to Functionally Distinct DNA-Damaging Agents
Cited by: 154
Author(s): William Lee, Robert P. St.Onge, Michael Proctor, Patrick Flaherty, Michael I. Jordan, Adam P. Arkin, Ronald W. Davis, Corey Nislow, Guri Giaever
Software Mentions: 2
Published: over 19 years ago

10.1186/1476-069X-8-44

Prenatal exposure to tetrachloroethylene-contaminated drinking water and the risk of congenital anomalies: a retrospective cohort study
Cited by: 41
Author(s): Ann Aschengrau, Janice Weinberg, Patricia Janulewicz, Lisa G. Gallagher, Michael Winter, Verónica M. Vieira, Thomas F. Webster, David Ozonoff
Software Mentions: 2
Published: about 15 years ago

10.1007/s12529-018-09766-z

Coding Client Language in Motivational Interviewing for HIV Medication Adherence Using Self-Determination Theory
Cited by: 2
Author(s): Ailbhe Hogan, Delwyn Catley, Kathy Goggin, Michael Evangeli
Software Mentions: 2
Published: almost 6 years ago