Projects: pypi: swga
https://packages.ecosyste.ms/registries/pypi.org/packages/swga
Pipeline to select compatible primer sets for selective whole-genome amplification.
1 version
Latest release: over 10 years ago
10 downloads last month
Enhanced Analysis
Educational Contributors:
ecl@mail.med.upenn.edu
sesh@modvvlan502.0799.wlan.wireless-pennnet.upenn.edu
sesh@modvvlan502.0394.wlan.wharton.upenn.edu
sesh@modvvlan502.0820.wlan.wireless-pennnet.upenn.edu
sesh@mail.med.upenn.edu
Repository Activity:
Repository Owner:
Erik Clarke (user)
Data scientist in healthcare. Previously at Penn studying genomics and computational biology.
Data scientist in healthcare. Previously at Penn studying genomics and computational biology.
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+100
Educational commit emails
5 contributors with educational email addresses -
+2
Science terms in README
1 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning swga 3
10.1186/s12936-020-3137-8
Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelagoCited by: 25
Author(s): Andrew P. Morgan, Nicholas F. Brazeau, Billy Ngasala, Lwidiko E. Mhamilawa, Madeline Denton, Mwinyi Msellem, Ulrika Morris, Dayne L. Filer, Özkan Aydemir, Jeffrey A. Bailey, Jonathan B. Parr, Andreas Mårtensson, Anders Björkman, Jonathan J. Juliano
Software Mentions: 5
Published: over 6 years ago
10.1128/mBio.02257-16
Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of <i>Plasmodium vivax</i> from Unprocessed Clinical SamplesCited by: 54
Author(s): Annie N. Cowell, Dorothy E. Loy, Sesh A. Sundararaman, Hugo O. Valdivia, Kathleen Fisch, Andrés G. Lescano, G. Christian Baldeviano, Salomón Durand, Vincent R. Gerbasi, Colin J. Sutherland, Debbie Nolder, Joseph M. Vinetz, Beatrice H. Hahn, Elizabeth A. Winzeler
Software Mentions: 4
Published: over 9 years ago
10.1038/s41598-020-67568-4
Selective whole genome amplification of Plasmodium malariae DNA from clinical samples reveals insights into population structureCited by: 16
Author(s): Amy Ibrahim, Ernest Diez Benavente, Debbie Nolder, Stéphane Proux, M.K. Higgins, Julian Muwanguzi, Paula González, Hans‐Peter Fuehrer, Cally Roper, François Nosten, Colin J. Sutherland, Taane G. Clark, Susana Campino
Software Mentions: 2
Published: about 6 years ago