Projects: pypi: svviz
https://packages.ecosyste.ms/registries/pypi.org/packages/svviz
A read visualizer for structural variants
21 versions
Latest release: almost 2 years ago
97 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
svviz (organization)
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+60
Educational commit emails
3 contributors with educational email addresses -
+8
Science terms in README
4 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning svviz 6
10.1186/s12859-019-3145-2
MoMI-G: modular multi-scale integrated genome graph browserCited by: 20
Author(s): Toshiyuki Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara
Software Mentions: 8
Published: over 5 years ago
10.1038/s10038-019-0687-0
Visualization tools for human structural variations identified by whole-genome sequencingCited by: 8
Author(s): Toshiyuki Yokoyama, Masahiro Kasahara
Software Mentions: 7
Published: over 5 years ago
10.1186/s13059-021-02380-5
Samplot: a platform for structural variant visual validation and automated filteringCited by: 40
Author(s): Jonathan R Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael Cormier, Aaron R. Quinlan, Ryan M. Layer
Software Mentions: 5
Published: about 4 years ago
10.1186/s12864-016-2366-2
svclassify: a method to establish benchmark structural variant callsCited by: 96
Author(s): Hemang Parikh, Marghoob Mohiyuddin, Hugo Y. K. Lam, Hariharan Iyer, Desu Chen, M. R. Pratt, Gábor Bartha, Noah Spies, Wolfgang Losert, Justin M. Zook, Marc Salit
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pcbi.1007933
A crowdsourced set of curated structural variants for the human genomeCited by: 5
Author(s): Lesley Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme C. Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
Software Mentions: 3
Published: about 5 years ago
10.1186/s13073-021-00841-x
ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing dataCited by: 29
Author(s): André E. Minoche, Ben Lundie, Greg Peters, Thomas Ohnesorg, Mark Pinese, David M. Thomas, Andreas Zankl, Tony Roscioli, Nicole Schönrock, Sarah Kummerfeld, Leslie Burnett, Marcel E. Dinger, Mark J. Cowley
Software Mentions: 3
Published: over 4 years ago