Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: svviz

https://packages.ecosyste.ms/registries/pypi.org/packages/svviz

A read visualizer for structural variants
21 versions
Latest release: about 1 year ago
97 downloads last month

Papers Mentioning svviz 6

MoMI-G: modular multi-scale integrated genome graph browser
Cited by: 20
Author(s): Toshiyuki Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara
Software Mentions: 8
Published: about 5 years ago

10.1038/s10038-019-0687-0

Visualization tools for human structural variations identified by whole-genome sequencing
Cited by: 8
Author(s): Toshiyuki Yokoyama, Masahiro Kasahara
Software Mentions: 7
Published: about 5 years ago

10.1186/s13059-021-02380-5

Samplot: a platform for structural variant visual validation and automated filtering
Cited by: 40
Author(s): Jonathan R Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael Cormier, Aaron R. Quinlan, Ryan M. Layer
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-016-2366-2

svclassify: a method to establish benchmark structural variant calls
Cited by: 96
Author(s): Hemang Parikh, Marghoob Mohiyuddin, Hugo Y. K. Lam, Hariharan Iyer, Desu Chen, M. R. Pratt, Gábor Bartha, Noah Spies, Wolfgang Losert, Justin M. Zook, Marc Salit
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pcbi.1007933

A crowdsourced set of curated structural variants for the human genome
Cited by: 5
Author(s): Lesley Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme C. Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-021-00841-x

ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing data
Cited by: 29
Author(s): André E. Minoche, Ben Lundie, Greg Peters, Thomas Ohnesorg, Mark Pinese, David M. Thomas, Andreas Zankl, Tony Roscioli, Nicole Schönrock, Sarah Kummerfeld, Leslie Burnett, Marcel E. Dinger, Mark J. Cowley
Software Mentions: 3
Published: over 3 years ago