Projects: pypi: svtools
https://packages.ecosyste.ms/registries/pypi.org/packages/svtools
Tools for processing and analyzing structural variants
9 versions
Latest release: almost 7 years ago
167 downloads last month
Enhanced Analysis
Educational Contributors:
dlarson@genome.wustl.edu
cc2qe@virginia.edu
aregier@genome.wustl.edu
aregier@wustl.edu
jeldred@genome.wustl.edu
delarson@wustl.edu
irahall@virginia.edu
dantaki@ucsd.edu
Repository Activity:
Repository Owner:
Ira Hall lab (organization)
Academic
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+160
Educational commit emails
8 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning svtools 6
10.1186/s13059-020-02192-z
The evolution of relapse of adult T cell acute lymphoblastic leukemiaCited by: 9
Author(s): Inés Sentís, Santiago González, Eulàlia Genescà, Violeta García-Hernández, Ferran Muiños, Celia Guadalupe Morales González, Erika López-Arribillaga, Jéssica González, Lierni Fernández‐Ibarrondo, Loris Mularoni, Lluís Espinosa, Beatríz Bellosillo, Josep‐María Ribera, Anna Bigas, Abel González-Pérez, Núria López‐Bigas
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12864-021-07703-1
Detection of copy number variants in African goats using whole genome sequence dataCited by: 3
Author(s): Wilson Nandolo, Gábor Mészáros, María Wurzinger, Liveness Jessica Banda, Timothy Gondwe, Henry Mulindwa, Helen N. Nakimbugwe, Emily L. Clark, M. Jennifer Woodward-Greene, Mei Liu, George E. Liu, Curtis P. Van Tassell, Benjamin D. Rosen, Johann Sölkner
Software Mentions: 3
Published: about 5 years ago
10.1038/s41421-020-00239-w
A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseasesCited by: 41
Author(s): Xiaomin Liu, Shanmei Tang, Zhong Huang, Xin Tong, Zhuye Jie, Qiuxia Ding, Dan Wang, Ruidong Guo, Liang Xiao, Xun Xu, Huanming Yang, Jian Wang, Yang Zong, Weibin Liu, Xiao Liu, Yong Zhang, Susanne Brix, Karsten Kristiansen, Yong Hou, Huijue Jia, Tao Zhang
Software Mentions: 3
Published: over 5 years ago
10.1111/pbi.12825
Comprehensive description of genomewide nucleotide and structural variation in short-season soya beanCited by: 41
Author(s): Davoud Torkamaneh, Jérôme Laroche, Aurélie Tardivel, Louise S. O’Donoughue, Elroy R. Cober, Istvan Rajcan, François Belzile
Software Mentions: 2
Published: almost 9 years ago
10.1093/g3journal/jkab154
Genomic patterns of structural variation among diverse genotypes of <i>Sorghum bicolor</i> and a potential role for deletions in local adaptationCited by: 6
Author(s): Kittikun Songsomboon, Zachary Brenton, James Heuser, Stephen Kresovich, Nadia Shakoor, Todd C. Mockler, Elizabeth A. Cooper
Software Mentions: 2
Published: over 5 years ago
10.1093/bioinformatics/btz492
svtools: population-scale analysis of structural variationCited by: 44
Author(s): David E. Larson, Haley J. Abel, Colby Chiang, Abhijit Badve, Indraniel Das, James M. Eldred, Ryan M. Layer, Ira M. Hall
Software Mentions: 1
Published: about 7 years ago