Ecosyste.ms: Papers

10.1371/journal.pcbi.1005372

Cheminformatics-aided discovery of small-molecule Protein-Protein Interaction (PPI) dual inhibitors of Tumor Necrosis Factor (TNF) and Receptor Activator of NF-κB Ligand (RANKL)
Cited by: 46
Author(s): Georgia Melagraki, Evangelos Ntougkos, Vagelis Rinotas, Christos Papaneophytou, Georgios Leonis, Thomas Mavromoustakos, George Kontopidis, Eleni Douni, Antreas Afantitis, George Kollias
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1002433

Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm
Cited by: 61
Author(s): Milan Spasić, Caroline C. Friedel, Johanna Schott, Jochen Kreth, Kathrin Leppek, Sarah Hofmann, Sevim Ozgur, Georg Stoecklin
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pntd.0005028

The Mitochondrial Genomes of the Zoonotic Canine Filarial Parasites Dirofilaria (Nochtiella) repens and Candidatus Dirofilaria (Nochtiella) Honkongensis Provide Evidence for Presence of Cryptic Species
Cited by: 41
Author(s): Esra Yılmaz, Moritz Fritzenwanker, Nikola Pantchev, Mathias Lendner, Sirichit Wongkamchai, Domenico Otranto, Inge Kroidl, Martin Dennebaum, Thanh Hoa Le, Tran Anh Le, Sabrina Ramünke, Roland Schaper, Georg von Samson‐Himmelstjerna, Sven Poppert, Jürgen Krücken
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0036205

Evolutionary Dynamics of Co-Segregating Gene Clusters Associated with Complex Diseases
Cited by: 7
Author(s): Christoph Preuß, Mona Riemenschneider, David R. Wiedmann, Monika Stoll
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0168817

miRNAs Do Not Regulate Circadian Protein Synthesis in the Dinoflagellate Lingulodinium polyedrum
Cited by: 6
Author(s): Steve Dagenais-Bellefeuille, Mathieu Beauchemin, David Morse
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0127951

E2F1-Mediated Induction of NFYB Attenuates Apoptosis via Joint Regulation of a Pro-Survival Transcriptional Program
Cited by: 14
Author(s): Xiangyu Jiang, Joseph R. Nevins, Igor Shats, Jen‐Tsan Chi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0126830

Identification of Sestrin3 Involved in the In vitro Resistance of Colorectal Cancer Cells to Irinotecan
Cited by: 2
Author(s): Seung Ho Choi, Hye Kyung Hong, Yong Beom Cho, Woo Yong Lee, Hae Young Yoo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037250

High-Resolution Positional Tracking for Long-Term Analysis of Drosophila Sleep and Locomotion Using the “Tracker” Program
Cited by: 171
Author(s): Nathan C. Donelson, Eugene Z. Kim, Justin B. Slawson, Christopher G. Vecsey, Robert Huber, Leslie C. Griffith
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0063131

Altered Modular Organization of Structural Cortical Networks in Children with Autism
Cited by: 39
Author(s): Feng Shi, Li Wang, Ziwen Peng, Chong Yaw Wee, Dinggang Shen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0194817

Highly-sensitive detection of Salmonella typhi in clinical blood samples by magnetic nanoparticle-based enrichment and in-situ measurement of isothermal amplification of nucleic acids
Cited by: 18
Author(s): Avinash Kaur, Arti Kapil, Ravikrishnan Elangovan, Sandeep Kumar Jha, Dinesh Kalyanasundaram
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0067654

Metabolomic Profiles Are Gender, Disease and Time Specific in the Interleukin-10 Gene-Deficient Mouse Model of Inflammatory Bowel Disease
Cited by: 17
Author(s): Victor Tso, Beate C. Sydora, Rae Foshaug, Thomas A. Churchill, Jason Doyle, Carolyn M. Slupsky, Richard N. Fedorak
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0200312

Tracing anthropogenic inputs in stream foods webs with stable carbon and nitrogen isotope systematics along an agricultural gradient
Cited by: 8
Author(s): Kern Y. Lee, Lisa Graham, Daniel E. Spooner, Marguerite A. Xenopoulos
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0112871

Potential Conservation of Circadian Clock Proteins in the phylum Nematoda as Revealed by Bioinformatic Searches
Cited by: 13
Author(s): Andrés Romanowski, Mario Garavaglia, María Eugenia Goya, Pablo Daniel Ghiringhelli, Diego A. Golombék
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0006626

Endogenous Human Brain Dynamics Recover Slowly Following Cognitive Effort
Cited by: 156
Author(s): Anna Barnes, Edward T. Bullmore, John Suckling
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0176022

MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana
Cited by: 28
Author(s): Thorya Fallath, Brendan N. Kidd, Jiri Stiller, Céline Davoine, Stefan Björklund, John M. Manners, Kemal Kazan, Peer M. Schenk
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0147550

Crystal Structure of a Ube2S-Ubiquitin Conjugate
Cited by: 21
Author(s): Sonja Lorenz, Moitrayee Bhattacharyya, C. Feiler, Michael Rapé, John Kuriyan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0197567

CRISPR/Cas9 mediated high efficiency knockout of the eye color gene Vermillion in Helicoverpa zea (Boddie)
Cited by: 18
Author(s): Omaththage P. Perera, Nathan S. Little, Calvin A Pierce
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0009302

Cortical Thickness and Subcortical Gray Matter Reductions in Neuropsychiatric Systemic Lupus Erythematosus
Cited by: 49
Author(s): Rex E. Jung, Judith M. Segall, Rachael Grazioplene, Clifford Qualls, Wilmer L. Sibbitt, Carlos A. Roldan
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0021047

Classification of First-Episode Schizophrenia Patients and Healthy Subjects by Automated MRI Measures of Regional Brain Volume and Cortical Thickness
Cited by: 66
Author(s): Yoichiro Takayanagi, Tsutomu Takahashi, Lina Orikabe, Yuriko Mozue, Yasuhiro Kawasaki, Kazue Nakamura, Yoko Sato, Masanari Itokawa, Hidenori Yamasue, Kiyoto Kasai, Masayoshi Kurachi, Yuji Okazaki, Michio Suzuki
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0127699

Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction
Cited by: 60
Author(s): Rebecca Lyons, Anca Rusu, Jiri Stiller, Jonathan Powell, John M. Manners, Kemal Kazan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0121902

Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana
Cited by: 88
Author(s): Rebecca Lyons, Jiri Stiller, Jonathan Powell, Anca Rusu, John M. Manners, Kemal Kazan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0085195

Metabolic Network Analysis-Based Identification of Antimicrobial Drug Targets in Category A Bioterrorism Agents
Cited by: 19
Author(s): Yong‐Yeol Ahn, Deok-Sun Lee, Henry Burd, William Blank, Vinayak Kapatral
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0198086

Understanding variable disease severity in X-linked retinoschisis: Does RS1 secretory mechanism determine disease severity?
Cited by: 7
Author(s): Dhandayuthapani Sudha, Srividya Neriyanuri, Ramya Sachidanandam, Srikrupa N. Natarajan, Gandra Mamatha, Tharigopala Arokiasamy, Muthukumaran Sivashanmugam, Mohammed Alameen, Umashankar Vetrivel, Lingam Gopal, Vikas Khetan, Rajiv Raman, Parveen Sen, Subbulakshmi Chidambaram, Jayamuruga Pandian Arunachalam
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0232100

A comparison of automated and manual co-registration for magnetoencephalography
Cited by: 4
Author(s): Jon M. Houck, Eric D. Claus
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0024735

Structure and Behavior of Human α-Thrombin upon Ligand Recognition: Thermodynamic and Molecular Dynamics Studies
Cited by: 9
Author(s): Vívian de Almeida Silva, Maria Thereza Cargnelutti, Guilherme Menegon Giesel, L.C. Palmieri, Robson Q. Monteiro, Hugo Verli, Luis Maurício Trambaioli da Rocha e Lima
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0066786

A 1H NMR-Based Metabonomic Investigation of Time-Related Metabolic Trajectories of the Plasma, Urine and Liver Extracts of Hyperlipidemic Hamsters
Cited by: 86
Author(s): Chunying Jiang, Keli Yang, Yang Liu, Zhao-xia Miao, Yinghong Wang, Haibo Zhu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0039277

Functional Phenotypic Rescue of Caenorhabditis elegans Neuroligin-Deficient Mutants by the Human and Rat NLGN1 Genes
Cited by: 27
Author(s): Fernando Calahorro, Manuel Ruiz-Rubio
Software Mentions: 1
Published: over 12 years ago

10.3390/cells8090949

Chronic Exposure to Chewing Tobacco Induces Metabolic Reprogramming and Cancer Stem Cell-Like Properties in Esophageal Epithelial Cells
Cited by: 21
Author(s): Keshava K. Datta, Shankargouda Patil, Krishna Patel, Niraj Babu, Remya Raja, Vishalakshi Nanjappa, Kiran K. Mangalaparthi, Bharti Dhaka, Padmavathy Rajagopalan, Sayali Chandrashekhar Deolankar, R. Kannan, Prashant Kumar, T. S. Keshava Prasad, P. B. Mathur, Anjali Kumari, Malini Manoharan, Karunakaran Coral, Saktivel Murugan, David Sidransky, Ravi Gupta, Rohit Gupta, Arati Khanna-Gupta, Aditi Chatterjee, Harsha Gowda
Software Mentions: 1
Published: over 5 years ago

10.1007/s00062-020-00901-6

Sequelae of Premature Birth in Young Adults
Cited by: 10
Author(s): Dennis M. Hedderich, Tobias Boeckh‐Behrens, Josef Bäuml, Aurore Menegaux, Marcel Daamen, Claus Zimmer, Peter Bartmann, Lukas Scheef, Henning Boecker, Dieter Wolke, Christian Sorg, Judith Spiro
Software Mentions: 1
Published: over 4 years ago

10.1016/j.cortex.2017.05.020

Normal aging and Parkinson's disease are associated with the functional decline of distinct frontal-striatal circuits
Cited by: 19
Author(s): Aleksandra Gruszka, Adam Hampshire, Roger A. Barker, Adrian M. Owen
Software Mentions: 1
Published: over 7 years ago

10.1037/dev0000541

Social perspective taking is associated with self-reported prosocial behavior and regional cortical thickness across adolescence.
Cited by: 35
Author(s): Christian K. Tamnes, Knut Øverbye, Lia Ferschmann, Anders M. Fjell, Kristine B. Walhovd, Sarah‐Jayne Blakemore, Iroise Dumontheil
Software Mentions: 1
Published: about 6 years ago

10.1002/ece3.2302

Inter‐ and intraspecific variation in body‐ and genome size in calanoid copepods from temperate and arctic waters
Cited by: 32
Author(s): Hans Petter Leinaas, Marwa Jalal, Tove M. Gabrielsen, Dag O. Hessen
Software Mentions: 1
Published: over 8 years ago

10.1186/s41747-019-0092-7

Hippocampus subfield volumetry after microsurgical or endovascular treatment of intracranial aneurysms—an explorative study
Cited by: 4
Author(s): Dennis M. Hedderich, Tim Jonas Reeß, Matthias Thaler, Maria Berndt, Sebastian Moench, Manuel Lehm, Tiberiu Andrisan, Christian Maegerlein, Bernhard Meyer, Yu‐Mi Ryang, Claus Zimmer, Maria Wostrack, Benjamin Friedrich
Software Mentions: 1
Published: over 5 years ago

10.1155/2013/256782

Predicting the Drug Safety for Traditional Chinese Medicine through a Comparative Analysis of Withdrawn Drugs Using Pharmacological Network
Cited by: 5
Author(s): Mengzhu Xue, Shoude Zhang, Chaoqian Cai, Xiao Yu, Lei Shan, Xiaofeng Liu, Weidong Zhang, Honglin Li
Software Mentions: 1
Published: almost 12 years ago

10.1155/2015/852194

Evaluation of the Inhibitory Effects of Bavachinin and Bavachin on Human Monoamine Oxidases A and B
Cited by: 15
Author(s): Najla O. Zarmouh, Elizabeth Mazzio, Faisel M. Elshami, Samia S. Messeha, Suresh Eyunni, Karam F.A. Soliman
Software Mentions: 1
Published: almost 10 years ago

10.12688/f1000research.10041.1

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data
Cited by: 12
Author(s): Delasa Aghamirzaie, Karthik Raja Velmurugan, Shengyong Wu, Doaa Altarawy, Lenwood S. Heath, Ruth Grene
Software Mentions: 1
Published: over 7 years ago

10.3389/fnagi.2020.00075

Brain-Region Specific Metabolic Abnormalities in Parkinson’s Disease and Levodopa-Induced Dyskinesia
Cited by: 16
Author(s): Changwei Yang, Tingting Zhang, Wuqiong Wang, Yingying Xiang, Huang Qun, Chenglong Xie, Liangcai Zhao, Hong Zheng, Yunjun Yang, Hongchang Gao
Software Mentions: 1
Published: over 4 years ago

10.3389/fnagi.2016.00297

Parahippocampal Cortex Mediates the Relationship between Lutein and Crystallized Intelligence in Healthy, Older Adults
Cited by: 18
Author(s): Marta K. Zamroziewicz, Erick J. Paul, Christopher E. Zwilling, Elizabeth J. Johnson, Matthew J. Kuchan, Neal J. Cohen, Aron K. Barbey
Software Mentions: 1
Published: almost 8 years ago

10.3389/fbioe.2017.00088

Logistic Regression of Ligands of Chemotaxis Receptors Offers Clues about Their Recognition by Bacteria
Cited by: 1
Author(s): Takashi Sagawa, Ryota Mashiko, Yusuke Yokota, Yasushi Naruse, Masato Okada, Hiroaki Kojima
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnhum.2013.00311

Plasticity in the Visual System is Associated with Prosthesis Use in Phantom Limb Pain
Cited by: 22
Author(s): Sandra Preißler, Caroline Dietrich, Kathrin R. Blume, Gunther O. Hofmann, Wolfgang H. R. Miltner, Thomas Weiß
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnhum.2013.00722

The envirome and the connectome: exploring the structural noise in the human brain associated with socioeconomic deprivation
Cited by: 22
Author(s): Rajeev Krishnadas, Jongrae Kim, John M. McLean, G. David Batty, Jennifer McLean, Keith Millar, Chris J. Packard, Jonathan Cavanagh
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2014.00782

A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data
Cited by: 18
Author(s): Kathy T. Mou, Usha Muppirala, Andrew J. Severin, Tyson A. Clark, Matthew Boitano, Paul J. Plummer
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2021.637813

The Emergence of Invasive Streptococcus pneumoniae Serotype 24F in Lebanon: Complete Genome Sequencing Reveals High Virulence and Antimicrobial Resistance Characteristics
Cited by: 10
Author(s): Lina Reslan, Marc Finianos, Ibrahim Bitar, Mohamad Bahij Moumneh, George F. Araj, Alissar Zaghlout, Celina Boutros, Tamima Jisr, Malak Nabulsi, Gilbert Kara Yaccoub, Monzer Hamzé, Marwan Osman, Elie Bou Raad, Jaroslav Hrabák, Ghassan M. Matar, Ghassan Dbaibo
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2013.00196

Analysis of global gene expression changes in human bronchial epithelial cells exposed to spores of the allergenic fungus, Alternaria alternata
Cited by: 14
Author(s): Mihaela Babiceanu, Brad Howard, Amanda Rumore, Hirohito Kita, Christopher B. Lawrence
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmolb.2021.653262

Active-Site Models of Streptococcus pyogenes Cas9 in DNA Cleavage State
Cited by: 5
Author(s): Honghai Tang, Hui Yuan, Wenhao Du, Li Gan, Dongmei Xue, Qiang Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmolb.2021.669082

Metabolomic Analysis of Hexagenid Mayflies Exposed to Sublethal Concentrations of Naphthenic Acid
Cited by: 2
Author(s): Sarah M. Pomfret, Robert B. Brua, Danielle Milani, Adam G. Yates
Software Mentions: 1
Published: over 3 years ago

10.3389/fneur.2018.00354

Cortical Brain Changes in Patients With Locked-In Syndrome Experiencing Hallucinations and Delusions
Cited by: 3
Author(s): Marco Sarà, Riccardo Cornia, Massimiliano Conson, Antonio Carolei, Simona Sacco, Francesca Pistoia
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2016.00306

One-Class Support Vector Machines Identify the Language and Default Mode Regions As Common Patterns of Structural Alterations in Young Children with Autism Spectrum Disorders
Cited by: 21
Author(s): Alessandra Retico, Ilaria Gori, Alessia Giuliano, Filippo Muratori, Sara Calderoni
Software Mentions: 1
Published: over 8 years ago

10.3389/fnins.2015.00379

A comparison of FreeSurfer-generated data with and without manual intervention
Cited by: 103
Author(s): Christopher S. McCarthy, Avinash Ramprashad, Carlie A. Thompson, Jo Anna Botti, Ioana L. Coman, Wendy R. Kates
Software Mentions: 1
Published: about 9 years ago

10.3389/fonc.2020.01666

Multi-Omics Analysis to Characterize Cigarette Smoke Induced Molecular Alterations in Esophageal Cells
Cited by: 1
Author(s): Aafaque Ahmad Khan, Krishna Patel, Shankargouda Patil, Niraj Babu, Kiran K. Mangalaparthi, Hitendra S. Solanki, Vishalakshi Nanjappa, Anjali Kumari, Malini Manoharan, Karunakaran Coral, Saktivel Murugan, Bipin Nair, Rekha V. Kumar, Manjusha Biswas, David Sidransky, Ravi Gupta, Rohit Gupta, Arati Khanna-Gupta, Prashant Kumar, Aditi Chatterjee, Harsha Gowda
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2018.00100

Inducing the Alternative Oxidase Forms Part of the Molecular Strategy of Anoxic Survival in Freshwater Bivalves
Cited by: 21
Author(s): María Soledad Yusseppone, Iara Rocchetta, Sebastián E. Sabatini, Carlos Marcelo Luquet, Marı́a del Carmen Molina, Christoph Held, Doris Abele
Software Mentions: 1
Published: over 6 years ago

10.3389/fpsyg.2018.02405

360 Degrees of Facial Perception: Congruence in Perception of Frontal Portrait, Profile, and Rotation Photographs
Cited by: 7
Author(s): Vít Třebický, Jitka Fialová, David Stella, Zuzana Štěrbová, Karel Kleisner, Jan Havlı́ček
Software Mentions: 1
Published: almost 6 years ago

10.1128/genomeA.00595-13

Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium <i>Geobacillus</i> sp. Strain WSUCF1
Cited by: 22
Author(s): Aditya Bhalla, Amoldeep S. Kainth, Rajesh K. Sani
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.00590-13

Complete Genome Sequence for Lactobacillus helveticus CNRZ 32, an Industrial Cheese Starter and Cheese Flavor Adjunct
Cited by: 20
Author(s): Jeff R. Broadbent, Judith M. Hughes, Dennis L. Welker, Thomas A. Tompkins, J. L. Steele
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.01387-15

Genome Sequence of the Atypical Symbiotic <i>Frankia</i> R43 Strain, a Nitrogen-Fixing and Hydrogen-Producing Actinobacterium
Cited by: 21
Author(s): Petar Pujic, Alexander Bolotin, Pascale Fournier, Alexeï Sorokin, Alla Lapidus, Kerstin H. Richau, Jérôme Briolay, Farida Mébarki, Philippe Normand, Anita Sellstedt
Software Mentions: 1
Published: almost 9 years ago

10.1128/genomeA.01364-16

Draft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933
Cited by: 2
Author(s): Vikrant Dutta, Sangmi Lee, Todd J. Ward, Nathane Orwig, Eric Altermann, Dereje D. Jima, Cameron Parsons, Sophia Kathariou
Software Mentions: 1
Published: almost 8 years ago

10.1128/genomeA.00480-17

Three Draft Genome Sequences of the Bacterial Plant Pathogen Ralstonia solanacearum, Isolated in Georgia
Cited by: 1
Author(s): Adam Kotorashvili, G. Meparishvili, Giorgi Gogoladze, Nato Kotaria, M. Muradashvili, Maia Zarandia, Daviti Tsaguria
Software Mentions: 1
Published: over 7 years ago

10.1186/gb-2006-7-8-r76

Cited by: 309
Author(s): Yves Gibon, Björn Usadel, Oliver E. Blaesing, Beate Kamlage, Melanie Hoehne, Richard N. Trethewey, Mark Stitt
Software Mentions: 1
Published: almost 19 years ago

10.1186/gb-2009-10-10-r115

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
Cited by: 175
Author(s): Joshua Z. Levin, Michael F. Berger, Xian Adiconis, Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A. Garraway, Andreas Gnirke
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13059-016-0955-7

Genomic screens identify a new phytobacterial microbe-associated molecular pattern and the cognate Arabidopsis receptor-like kinase that mediates its immune elicitation
Cited by: 62
Author(s): G. Adam Mott, Shalabh Thakur, Elwira Smakowska, Pauline W. Wang, Youssef Belkhadir, Darrell Desveaux, David S. Guttman
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-019-1760-x

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Cited by: 60
Author(s): Derek M. Bickhart, Michael Watson, Sergey Koren, Kevin Panke-Buisse, Laura M. Cersosimo, Maximilian O. Press, Curtis P. Van Tassell, Jo Ann S. Van Kessel, Bradd J. Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn Sullivan, Phillip R. Myer, Jay Ghurye, Mihai Pop, Paul J. Weimer, Adam M. Phillippy, Timothy P. L. Smith
Software Mentions: 1
Published: over 5 years ago

10.1186/2041-9414-3-2

Differential regulation of intracellular factors mediating cell cycle, DNA repair and inflammation following exposure to silver nanoparticles in human cells
Cited by: 121
Author(s): P. V. Asharani, Swaminathan Sethu, Hui Kheng Lim, G. Balaji, Suresh Valiyaveettil, M. Prakash Hande
Software Mentions: 1
Published: almost 13 years ago

10.1186/1757-4749-5-27

Timely approaches to identify probiotic species of the genus Lactobacillus
Cited by: 52
Author(s): Stefan R Herbel, Wilfried Vahjen, Lothar H. Wieler, Sebastian Guenther
Software Mentions: 1
Published: almost 12 years ago

10.1074/jbc.RA120.016738

Alternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrin
Cited by: 8
Author(s): Bin Li, Xingming Deng, Sok Ho Kim, Leann Buhrow, Diana R. Tomchick, Margaret A. Phillips, Anthony J. Michael
Software Mentions: 1
Published: almost 4 years ago

10.1186/1532-429X-16-1

Cardiovascular magnetic resonance in pregnancy: Insights from the cardiac hemodynamic imaging and remodeling in pregnancy (CHIRP) study
Cited by: 126
Author(s): Robin Ducas, Jason E. Elliott, Steven F Melnyk, Sheena Premecz, Megan daSilva, Kelby Cleverley, Piotr Wtorek, G. Scott Mackenzie, Michael Helewa, Davinder S. Jassal
Software Mentions: 1
Published: almost 11 years ago

10.1021/acs.jcim.0c01468

Targeting the JAK/STAT Pathway: A Combined Ligand- and Target-Based Approach
Cited by: 6
Author(s): María Gálvez-Llompart, Riccardo Ocello, Laura Rullo, Serena Stamatakos, Irene Alessandrini, Riccardo Zanni, Iñaki Tuñón, Andrea Cavalli, Sanzio Candeletti, Matteo Masetti, Patrizia Romualdi, Maurizio Recanatini
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/7516357

Association between Poor Ergophthalmologic Practices and Computer Vision Syndrome among University Administrative Staff in Ghana
Cited by: 15
Author(s): Samuel Bert Boadi-Kusi, Sampson Listowell Abu, George Oppong Acheampong, Peter Osei-Wusu Adueming, Emmanuel Kwasi Abu
Software Mentions: 1
Published: over 4 years ago

10.1080/14756366.2018.1538136

Synthesis and biological assessment of KojoTacrines as new agents for Alzheimer’s disease therapy
Cited by: 18
Author(s): Youssef Dgachi, Hélène Martin, Rim Malek, Daniel Jun, Jana Janočková, Vendula Šepsová, Ondřej Soukup, Isabel Iriepa, Ignacio Moraleda, Emna Maalej, M. Carmo Carreiras, Bernard Refouvelet, Fakher Chabchoub, José Marco‐Contelles, Lhassane Ismaïli
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13014-018-0982-5

Serum proton NMR metabolomics analysis of human lung cancer following microwave ablation
Cited by: 30
Author(s): Jianming Hu, Huangtao Sun
Software Mentions: 1
Published: over 6 years ago

10.1038/srep07358

Development of a general method for detection and quantification of the P35S promoter based on assessment of existing methods
Cited by: 36
Author(s): Yuhua Wu, Yulei Wang, Li Jun, Wei Li, Li Zhang, Yunjing Li, Xiaofei Li, Li Zhu, Gang Wu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep15397

A geometric network model of intrinsic grey-matter connectivity of the human brain
Cited by: 11
Author(s): Yi-Ping Lo, Reuben D. O’Dea, Jonathan J. Crofts, Cheol E. Han, Marcus Kaiser
Software Mentions: 1
Published: about 9 years ago

10.1038/srep17256

CAP2 in cardiac conduction, sudden cardiac death and eye development
Cited by: 36
Author(s): Jeffrey Field, Diana Z. Ye, Manasi Shinde, Fang Liu, Kurt J. Schillinger, Minmin Lu, Tao Wang, Michelle Skettini, Yao Xiong, Alexis Brice, Daniel C. Chung, Vickas V. Patel
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20873

Hippocampal subfield volumetry in patients with subcortical vascular mild cognitive impairment
Cited by: 42
Author(s): Xinwei Li, Deyu Li, Shuyu Li, Yuxia Li, Kuncheng Li, Shuyu Li, Ying Han
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19976

Schizophrenia-Associated hERG channel Kv11.1-3.1 Exhibits a Unique Trafficking Deficit that is Rescued Through Proteasome Inhibition for High Throughput Screening
Cited by: 14
Author(s): Nicholas E. Calcaterra, Daniel J. Hoeppner, Huijun Wei, Andrew E. Jaffe, Brady J. Maher, James C. Barrow
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep31046

Free-energy studies reveal a possible mechanism for oxidation-dependent inhibition of MGL
Cited by: 12
Author(s): Laura Scalvini, Federica Vacondio, Michele Bassi, Daniele Pala, Alessio Lodola, Silvia Rivara, Kwang-Mook Jung, Daniele Piomelli, Marco Mor
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-02122-3

A data mining approach using cortical thickness for diagnosis and characterization of essential tremor
Cited by: 22
Author(s): J. Ignacio Serrano, Juan Pablo Romero, M. Dolores del Castillo, Eduardo Rocón, Elan D. Louis, Julián Benito‐León
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38561-3

Nematicidal and insecticidal activities of halogenated indoles
Cited by: 21
Author(s): Satish Kumar Rajasekharan, Jin-Hyung Lee, Vinothkannan Ravichandran, Jin-Cheol Kim, Jae Gyu Park
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-53756-4

Single variable domains from the T cell receptor β chain function as mono- and bifunctional CARs and TCRs
Cited by: 17
Author(s): Julyun Oh, Dora Toledo Warshaviak, Mikayel Mkrtichyan, Melanie L. Munguia, Abby Lin, Falene Chai, Craig R. Pigott, Jaspal S. Kang, Maria F Gallo, Alexander Kamb
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54019-y

Ancient mitogenomics clarifies radiation of extinct Mascarene giant tortoises (Cylindraspis spp.)
Cited by: 25
Author(s): Christian Kehlmaier, Eva Graciá, Patrick D. Campbell, Margaretha D. Hofmeyr, Silke Schweiger, Albert Martínez-Silvestre, Walter G. Joyce, Uwe Fritz
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-82299-w

Ancient mitogenomics elucidates diversity of extinct West Indian tortoises
Cited by: 12
Author(s): Christian Kehlmaier, Nancy A. Albury, David W. Steadman, Eva Graciá, Franz Rüschendorf, Uwe Fritz
Software Mentions: 1
Published: almost 4 years ago

10.3390/s20071963

Hardware-Intrinsic Multi-Layer Security: A New Frontier for 5G Enabled IIoT
Cited by: 16
Author(s): Hussain Al-Aqrabi, Anju P. Johnson, Richard Hill, Phil Lane, Tariq Alsboui
Software Mentions: 1
Published: over 4 years ago

10.3390/s20185295

Towards an Ultra Sensitive Hybrid Mass Sensor Based on Mode Localization without Resonance Tracking
Cited by: 3
Author(s): Claude Humbert, Vincent Walter, Najib Kacem, Thérèse Leblois
Software Mentions: 1
Published: about 4 years ago

10.1186/1751-0473-1-2

EST-PAC a web package for EST annotation and protein sequence prediction
Cited by: 11
Author(s): Yvan Strahm, David Powell, Christophe Lefèvre
Software Mentions: 1
Published: about 18 years ago

10.1186/2193-1801-3-571

Systemic levels of the endothelium-derived soluble adhesion molecules endocan and E-selectin in patients with suspected deep vein thrombosis
Cited by: 19
Author(s): Knut Anders Mosevoll, Roald Lindås, Øystein Wendelbo, Øystein Bruserud, Håkon Reikvam
Software Mentions: 1
Published: about 10 years ago

10.1186/s40793-018-0339-6

Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains
Cited by: 15
Author(s): Hyein Jang, Jong Kyu Woo, Youyoung Lee, Flavia Negrete, Samantha Finkelstein, Hannah R. Chase, Nicole Addy, Laura Ewing, Junia Jean Gilles Beaubrun, Isha R. Patel, Jayanthi Gangiredla, Athmanya K. Eshwar, Ziad W. Jaradat, Kun‐Ho Seo, Shabarinath Srikumar, Séamus Fanning, Roger Stephan, Angelika Lehner, Ben D. Tall, Gopal Gopinath
Software Mentions: 1
Published: almost 6 years ago