Ecosyste.ms: Papers

10.3390/genes9080372

TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes
Cited by: 12
Author(s): Maria Waldl, Bernhard C. Thiel, Roman Ochsenreiter, Alexander Holzenleiter, João Victor de Araújo Oliveira, Maria Emília M. T. Walter, Michael T. Wolfinger, Peter F. Stadler
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11050482

Rising Roles of Small Noncoding RNAs in Cotranscriptional Regulation: In Silico Study of miRNA and piRNA Regulatory Network in Humans
Cited by: 8
Author(s): Massimiliano Chetta, Lorena Di Pietro, Nenad Bukvić, Wanda Lattanzi
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-020-06866-7

Maternal effects shape the alternative splicing of parental alleles in reciprocal cross hybrids of Megalobrama amblycephala × Culter alburnus
Cited by: 9
Author(s): Li Ren, Xiaojing Yan, Xin Gao, Jialin Cui, Peiyao Yan, Chang Wu, Wuhui Li, Shaojun Liu
Software Mentions: 2
Published: over 4 years ago

10.26508/lsa.201800052

Pervasive allele-specific regulation on RNA decay in hybrid mice
Cited by: 9
Author(s): Wei Sun, Qingsong Gao, Bernhard Schaefke, Yuhui Hu, Wei Chen
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-10-35

Characterization of gene expression profiles for different types of mast cells pooled from mouse stomach subregions by an RNA amplification method
Cited by: 14
Author(s): Soken Tsuchiya, Yuki Tachida, Eri Segi-Nishida, Yasushi Okuno, Shigero Tamba, Gozoh Tsujimoto, Satoshi Tanaka, Yukihiko Sugimoto
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0005265

In Vivo Hippocampal Measurement and Memory: A Comparison of Manual Tracing and Automated Segmentation in a Large Community-Based Sample
Cited by: 108
Author(s): Nicolas Cherbuin, Kaarin J. Anstey, Chantal Réglade-Meslin, Perminder S. Sachdev
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0042173

Specialized Motor-Driven dusp1 Expression in the Song Systems of Multiple Lineages of Vocal Learning Birds
Cited by: 43
Author(s): Haruhito Horita, Masahiko Kobayashi, Wan chun Liu, Kotaro Oka, Erich D. Jarvis, Kazuhiro Wada
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2172-8-26

Transcriptional networks in plasmacytoid dendritic cells stimulated with synthetic TLR 7 agonists
Cited by: 72
Author(s): Woubalem Birmachu, Raymond M. Gleason, Barbara J Bulbulian, Christie L Riter, John P. Vasilakos, Kenneth E. Lipson, Yuri Nikolsky
Software Mentions: 2
Published: almost 18 years ago

10.1002/mbo3.1154

Functional and structural characterization of Hyp730, a highly conserved and dormancy‐specific hypothetical membrane protein
Cited by: 0
Author(s): Stewart Fannin, Jonathan Rangel, Abiodun P. Bodurin, Tannon Yu, Brandon Mistretta, Sujina Mali, Preethi H. Gunaratne, Steven J. Bark, Jerry O. Ebalunode, Arshad Khan, William R. Widger, Mehmet Şen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-015-0773-z

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes
Cited by: 21
Author(s): Magdalena A. Machnicka, Katarzyna Kamińska, Stanisław Dunin-Horkawicz, Janusz M. Bujnicki
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0134720

A Multi-Breed Genome-Wide Association Analysis for Canine Hypothyroidism Identifies a Shared Major Risk Locus on CFA12
Cited by: 15
Author(s): Matteo Bianchi, Stina S. Dahlgren, Jonathan Massey, Elisabeth Dietschi, Marcin Kierczak, Lund-Ziener Martine, Katarina Sundberg, S. I. Thoresen, Olle Kämpe, Gerhard Andersson, William Ollier, Åke Hedhammar, Tosso Leeb, Kerstin Lindblad‐Toh, L. J. Kennedy, Frode Lingaas, Gerli Pielberg
Software Mentions: 2
Published: over 9 years ago

10.1002/hbm.25598

Cortical and white matter correlates of language‐learning aptitudes
Cited by: 6
Author(s): Mikael Novén, Hampus Olsson, Gunther Helms, Merle Horne, Markus Nilsson, Mikael Roll
Software Mentions: 2
Published: over 3 years ago

10.1002/hbm.25009

Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms
Cited by: 25
Author(s): Thomas H. Alderson, Arun L.W. Bokde, J. A. Scott Kelso, Liam Maguire, Damien Coyle
Software Mentions: 2
Published: over 4 years ago

10.1172/jci.insight.141760

Ferritin H deficiency deteriorates cellular iron handling and worsens Salmonella typhimurium infection by triggering hyperinflammation
Cited by: 15
Author(s): David Haschka, Piotr Tymoszuk, Verena Petzer, Richard Hilbe, Simon Heeke, Stefanie Dichtl, Sergej Skvortsov, Egon Demetz, Sylvia Berger, Markus Seifert, Anna-Maria Mitterstiller, Patrizia Moser, Dirk Bumann, Manfred Nairz, Igor Theurl, Guenter Weiss
Software Mentions: 2
Published: over 3 years ago

10.1186/s12866-020-01908-2

S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM
Cited by: 18
Author(s): Courtney Klotz, Yong Jun Goh, Sarah O’Flaherty, Rodolphe Barrangou
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-021-04351-w

An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions
Cited by: 0
Author(s): Yongxue Huo, Yikun Zhao, Li‐Wen Xu, Hongmei Yi, Yunlong Zhang, Xianqing Jia, Han Zhao, Jiuran Zhao, Fengge Wang
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0124638

Proteomics and Transcriptomics of BJAB Cells Expressing the Epstein-Barr Virus Noncoding RNAs EBER1 and EBER2
Cited by: 21
Author(s): Genaro Pimienta, Victor Fok, Maria Haslip, Mária Nagy, Seyedtaghi Takyar, Joan A. Steitz
Software Mentions: 2
Published: over 9 years ago

10.1210/js.2019-00260

Using Structural Analysis In Silico to Assess the Impact of Missense Variants in MEN1
Cited by: 14
Author(s): Richard Caswell, Martina Owens, Adam C. Gunning, Sian Ellard, Caroline F. Wright
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/erx164

Increased temperature and CO2 alleviate photoinhibition in Desmarestia anceps: from transcriptomics to carbon utilization
Cited by: 28
Author(s): Concepción Iñíguez, S. Heinrich, Lars Harms, Francisco J. L. Gordillo
Software Mentions: 2
Published: over 7 years ago

10.1002/advs.201800420

Fluorination‐Enhanced Ambient Stability and Electronic Tolerance of Black Phosphorus Quantum Dots
Cited by: 65
Author(s): Xian Tang, Hong Chen, Joice Sophia Ponraj, Sathish Chander Dhanabalan, Qiang Xiao, Dianyuan Fan, Han Zhang
Software Mentions: 2
Published: over 6 years ago

10.1186/1741-7007-7-83

Proteomic analysis of blastema formation in regenerating axolotl limbs
Cited by: 119
Author(s): Nandini Rao, Deepali Jhamb, Derek J. Milner, Bingbing Li, Feifei Song, Mu Wang, S. Randal Voss, Mathew Palakal, Michael W. King, Behnaz Saranjami, Holly L.D. Nye, Jo Ann Cameron, David L. Stocum
Software Mentions: 2
Published: about 15 years ago

10.3390/molecules26040793

Identification and Analytical Characterization of a Novel Synthetic Cannabinoid-Type Substance in Herbal Material in Europe
Cited by: 7
Author(s): Emmanouil D. Tsochatzis, Joao Alberto Lopes, Margaret V. Holland, Fabiano Reniero, G Palmieri, Claude Guillou
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-017-17694-3

Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B
Cited by: 28
Author(s): Ke Shi, Özlem Demir, Michael A. Carpenter, J. D. Wagner, Kayo Kurahashi, Reuben S. Harris, Rommie E. Amaro, Hideki Aihara
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-43232-4

Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 6
Author(s): Kumaraswamy Naidu Chitrala, Xiaoming Yang, Philip Brandon Busbee, Narendra P. Singh, Laura Bonati, Yongna Xing, Prakash Nagarkatti
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-52121-9

Rigid fusions of designed helical repeat binding proteins efficiently protect a binding surface from crystal contacts
Cited by: 11
Author(s): Patrick Erñst, Annemarie Honegger, Floor van der Valk, Christina Ewald, Peer R. E. Mittl, Andreas Plückthun
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-78077-9

Repurposing of FDA approved ring systems through bi-directional target-ring system dual screening
Cited by: 2
Author(s): Surendra Kumar, Cheongyun Jang, Lalita Subedi, Sun Yeou Kim, Mi‐Hyun Kim
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-90831-1

Time-window into the transcrustal plumbing system dynamics of Dominica (Lesser Antilles)
Cited by: 6
Author(s): Léa Ostorero, Georges Boudon, Hélène Balcone-Boissard, Daniel J. Morgan, Thiébaut d’Augustin, Clara Solaro
Software Mentions: 2
Published: over 3 years ago

10.3390/s18093053

An Ontology-Based Cybersecurity Framework for the Internet of Things
Cited by: 59
Author(s): Bruno Augusti Mozzaquatro, Carlos Agostinho, Diogo M. Gonçalves, João Martins, Ricardo Jardim-Goncalves
Software Mentions: 2
Published: about 6 years ago

10.3390/s20082322

Hardware/Software Co-Design of Fractal Features Based Fall Detection System
Cited by: 4
Author(s): Ahsen Tahir, Gordon Morison, Dawn A. Skelton, Ryan M. Gibson
Software Mentions: 2
Published: over 4 years ago

10.1186/s12917-018-1752-1

Inherited selective cobalamin malabsorption in Komondor dogs associated with a CUBN splice site variant
Cited by: 9
Author(s): John C. Fyfe, Shelby L. Hemker, Alycia Frampton, Karthik Raj, Péter L. Nagy, Kristi J. Gibbon, Urs Giger
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules25245906

Possible Transmission Flow of SARS-CoV-2 Based on ACE2 Features
Cited by: 32
Author(s): Sk. Sarif Hassan, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Alaa A. A. Aljabali, Bruce D. Uhal, Kenneth Lundström, Nima Rezaei, Vladimir N. Uversky, Murat Seyran, Damiano Pizzol, Parise Adadi, António Soares, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Murtaza M. Tambuwala, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas‐da‐Cruz, Kazuo Takayama, Ãngel Serrano‐Aroca, Gaurav Chauhan, Giorgio Palù, Adam Brufsky
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules22122237

Antifungal Activity of Ramulus cinnamomi Explored by 1H-NMR Based Metabolomics Approach
Cited by: 22
Author(s): Chunpeng Wan, Pei Li, Chuying Chen, Xuan Peng, Mingxi Li, Ming Chen, Junsong Wang, Jinyin Chen
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13287-021-02193-0

Enhanced anti-inflammatory effects of mesenchymal stromal cells mediated by the transient ectopic expression of CXCR4 and IL10
Cited by: 20
Author(s): Rosario Hervás-Salcedo, María Fernández-García, Miriam Hernando-Rodríguez, Óscar Quintana-Bustamante, José C. Segovia, Márcio Alvarez-Silva, Mariano García-Arranz, Pablo Mínguez, Victoria del Pozo, Marta Rodríguez de Alba, Damián Garcı́a-Olmo, Carmen Ayuso, María L. Lamana, Juan A. Bueren, Rosa María Pérez Yáñez
Software Mentions: 1
Published: almost 4 years ago

10.1038/tp.2017.57

The CACNA1C risk allele rs1006737 is associated with age-related prefrontal cortical thinning in bipolar I disorder
Cited by: 42
Author(s): Márcio G. Soeiro-de-Souza, Beny Lafer, Ricardo Alberto Moreno, Fabiano G. Nery, Thais Chile, K. Chaim, Cláudia da Costa Leite, Rodrigo Machado‐Vieira, Maria Concepción García Otaduy, Homero Vallada
Software Mentions: 1
Published: over 7 years ago

10.1186/1745-6215-14-224

Brain imaging predictors and the international study to predict optimized treatment for depression: study protocol for a randomized controlled trial
Cited by: 36
Author(s): Stuart M. Grieve, Mayuresh S. Korgaonkar, Amit Etkin, Anthony Harris, Stephen H. Koslow, Stephen R. Wisniewski, Alan F. Schatzberg, Charles B. Nemeroff, Evian Gordon, Leanne M. Williams
Software Mentions: 1
Published: almost 12 years ago

10.1128/mBio.00351-20

Tailoring a Global Iron Regulon to a Uropathogen
Cited by: 18
Author(s): Rajdeep Banerjee, Erin Weisenhorn, Kevin J. Schwartz, Kevin S. Myers, Jeremy D. Glasner, Nicole T. Perna, Joshua J. Coon, Rodney A. Welch, Patricia J. Kiley
Software Mentions: 1
Published: over 4 years ago

10.3892/ijo.2012.1654

Established breast cancer stem cell markers do not correlate with in vivo tumorigenicity of tumor-initiating cells
Cited by: 38
Author(s): Christian Lehmann, Gabriele Jobs, Markus Thomas, Helmut Burtscher, Manfred Kubbies
Software Mentions: 1
Published: about 12 years ago

10.1016/j.ijscr.2021.105853

Hyperspectral imaging and indocyanine green fluorescence angiography in acute mesenteric ischemia: A case report on how to visualize intestinal perfusion
Cited by: 9
Author(s): Matthias Mehdorn, Sebastian Ebel, Helmut Köhler, Ines Gockel, Boris Jansen-Winkeln
Software Mentions: 1
Published: over 3 years ago

10.2196/publichealth.5064

Mobile Technology for Empowering Health Workers in Underserved Communities: New Approaches to Facilitate the Elimination of Neglected Tropical Diseases
Cited by: 29
Author(s): Michelle C. Stanton, Andrew Molineux, Charles D. Mackenzie, Louise A. Kelly-Hope
Software Mentions: 1
Published: almost 9 years ago

10.2196/17363

Learning Integrated Health System to Mobilize Context-Adapted Knowledge With a Wiki Platform to Improve the Transitions of Frail Seniors From Hospitals and Emergency Departments to the Community (LEARNING WISDOM): Protocol for a Mixed-Methods Implementation Study
Cited by: 1
Author(s): Patrick Archambault, Josée Rivard, Pascal Y. Smith, Samir K. Sinha, Michèle Morin, Annie LeBlanc, Yves Couturier, Isabelle Pelletier, El Kebir Ghandour, Jean‐Louis Denis, Don Melady, Daniel Paré, Josée Chouinard, Chantal Kroon, Maxime Huot-Lavoie, Laetitia Bert, Holly O. Witteman, Audrey-Anne Brousseau, Clémence Dallaire, Marie-Josée Sirois, Marcel Émond, Richard Fleet, Sam Chandavong
Software Mentions: 1
Published: over 4 years ago

10.1155/2014/473765

Modulation of Circulating Cytokine-Chemokine Profile in Patients Affected by Chronic Venous Insufficiency Undergoing Surgical Hemodynamic Correction
Cited by: 23
Author(s): Veronica Tisato, Giorgio Zauli, Sergio Gianesini, Erica Menegatti, Laura Brunelli, Roberto Manfredini, Paolo Zamboni, Paola Secchiero
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms160715405

Structural and Dynamical Insight into PPARγ Antagonism: In Silico Study of the Ligand-Receptor Interactions of Non-Covalent Antagonists
Cited by: 15
Author(s): F. Fratev, Ivanka Tsakovska, Merilin Al Sharif, Elina Mihaylova, Ilza Pajeva
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20143404

Structure-Based Virtual Screening Allows the Identification of Efficient Modulators of E-Cadherin-Mediated Cell–Cell Adhesion
Cited by: 17
Author(s): Andrea Dalle Vedove, Federico Falchi, Stefano Donini, Aurélie Dobric, Sébastien Germain, Giovanni Paolo Di Martino, Tommaso Prosdocimi, Chiara Vettraino, Archimede Torretta, Andrea Cavalli, Véronique Rigot, Frederic André, Emilio Parisini
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22063241

Structural Characterization of Receptor–Receptor Interactions in the Allosteric Modulation of G Protein-Coupled Receptor (GPCR) Dimers
Cited by: 3
Author(s): Raudah Lazim, Donghyuk Suh, Jai Woo Lee, Thi Ngoc Lan Vu, Sanghee Yoon, Sun Choi
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22189741

A Computational Workflow for the Identification of Novel Fragments Acting as Inhibitors of the Activity of Protein Kinase CK1δ
Cited by: 15
Author(s): Giovanni Bolcato, Eleonora Cescon, Matteo Pavan, Maicol Bissaro, Davide Bassani, Stephanie Federico, Giampiero Spalluto, Mattia Sturlese, Stefano Moro
Software Mentions: 1
Published: about 3 years ago

10.1186/s12974-020-01938-7

Microglial-associated responses to comorbid amyloid pathology and hyperhomocysteinemia in an aged knock-in mouse model of Alzheimer’s disease
Cited by: 11
Author(s): David Braun, Edgardo Dimayuga, Josh M. Morganti, Linda J. Van Eldik
Software Mentions: 1
Published: about 4 years ago

10.1523/JNEUROSCI.0696-19.2019

A Sound-Sensitive Source of Alpha Oscillations in Human Non-Primary Auditory Cortex
Cited by: 40
Author(s): Alexander J. Billig, Björn Herrmann, Ariane E. Rhone, Phillip E. Gander, Kirill V. Nourski, Beau F. Snoad, Christopher K. Kovach, Hiroto Kawasaki, Matthew A. Howard, Ingrid S. Johnsrude
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.12645

The components of Huang-Lian-Jie-Du-Decoction act synergistically to exert protective effects in a rat ischemic stroke model
Cited by: 34
Author(s): Qian Zhang, Junsong Wang, Chao Zhang, Shanting Liao, Pei Li, Ding‐Qiao Xu, Yan Lv, Ming‐Hua Yang, Ling‐Yi Kong
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.24629

Glioblastoma-specific anti-TUFM nanobody for <i>in-vitro</i> immunoimaging and cancer stem cell targeting
Cited by: 20
Author(s): Neja Šamec, Ivana Jovčevska, Jure Stojan, Alja Zottel, Mirjana Liović, Michael P. Myers, Serge Muyldermans, Jernej Šribar, Igor Križaj, Radovan Komel
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.10298

T-helper 1-type cytokines induce apoptosis and loss of HER-family oncodriver expression in murine and human breast cancer cells
Cited by: 15
Author(s): Prachi Namjoshi, Lori Showalter, Brian J. Czerniecki, Gary K. Koski
Software Mentions: 1
Published: about 5 years ago

10.1002/cjp2.94

A gene signature associated with PTEN activation defines good prognosis intermediate risk prostate cancer cases
Cited by: 18
Author(s): Chee Wee Ong, Pamela Maxwell, Muhammad A. Alvi, Stephen McQuaid, David J. Waugh, Ian G. Mills, Manuel Salto-Tellez
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12967-017-1215-7

Blood metabolomic fingerprint is distinct in healthy coronary and in stenosing or microvascular ischemic heart disease
Cited by: 18
Author(s): Martino Deidda, Cristina Piras, Christian Cadeddu Dessalvi, Damiana Congia, Emanuela Locci, Federica Ascedu, Gianfranco De Candia, M Cadeddu, Giorgio Lai, R Pirisi, Luigi Atzori, Giuseppe Mercuro
Software Mentions: 1
Published: over 7 years ago

10.1186/s40478-018-0607-0

Expression of renal cell markers and detection of 3p loss links endolymphatic sac tumor to renal cell carcinoma and warrants careful evaluation to avoid diagnostic pitfalls
Cited by: 5
Author(s): Rachel Jester, Iya Znoyko, Maria N. Garnovskaya, Joseph N. Rozier, Ryan Kegl, Sunil Patel, Tuan Tran, Malak Abedalthagafi, Craig Horbinski, Mary S. Richardson, Daynna J. Wolff, Razvan Lapadat, William Moore, Fausto J. Rodríguez, Jason Mull, Adriana Olar
Software Mentions: 1
Published: about 6 years ago

10.1523/ENEURO.0503-18.2019

Pannexin 1 Regulates Network Ensembles and Dendritic Spine Development in Cortical Neurons
Cited by: 28
Author(s): Juan C. Sanchez-Arias, Yan Liu, Catherine Choi, Sarah N. Ebert, Craig E. Brown, Leigh Anne Swayne
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103705

Clinical features and brain structural changes in magnetic resonance imaging in Alzheimer&#x2019;s disease patients with apathy
Cited by: 2
Author(s): Shuyang Yu, Wanlin Zhu, Ping Guo, Shaowu Li, Yaou Liu, Ting Lian, Du-yu Ding, Danning Li, Lixia Li, Li Liu, Hui Zhao, Lijun Zuo, Yang Hu, Qing Yu, Zhao Jin, Ruidan Wang, Junhua Gao, Rong Zhu, Xiaomin Wang, Wei Zhang
Software Mentions: 1
Published: about 4 years ago

10.1111/all.13198

Minimal impact of extensive heating of hen's egg and cow's milk in a food matrix on threshold dose‐distribution curves
Cited by: 21
Author(s): Benjamin C. Remington, Joost Westerhout, Dianne E. Campbell, Paul J. Turner
Software Mentions: 1
Published: over 7 years ago

10.3390/antibiotics10070862

A Fine-Tuned Lipophilicity/Hydrophilicity Ratio Governs Antibacterial Potency and Selectivity of Bifurcated Halogen Bond-Forming NBTIs
Cited by: 7
Author(s): Anja Kolarič, Maja Kokot, Martina Hrast, Matjaž Weiss, Irena Zdovc, Jurij Trontelj, Simon Žakelj, Marko Anderluh, Nikola Minovski
Software Mentions: 1
Published: over 3 years ago

10.1007/s00253-020-10519-w

Characterisation of four hotdog-fold thioesterases for their implementation in a novel organic acid production system
Cited by: 4
Author(s): Thomas William Paul Hickman, Damien Baud, Laure Benhamou, Helen C. Hailes, John M. Ward
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-15-S16-S13

Computational identification of novel natural inhibitors of glucagon receptor for checking type II diabetes mellitus
Cited by: 17
Author(s): Sonam Grover, Jaspreet Kaur Dhanjal, Sumit Goyal, Abhinav Grover, Durai Sundar
Software Mentions: 1
Published: about 10 years ago

10.1186/s12915-020-00795-3

Tandem gene duplications drive divergent evolution of caffeine and crocin biosynthetic pathways in plants
Cited by: 76
Author(s): Zhichao Xu, Xiangdong Pu, Ranran Gao, Olivia Costantina Demurtas, Steven J. Fleck, Michaela Richter, Chunnian He, Aijia Ji, Wei Sun, Jian-Qiang Kong, Kaizhi Hu, Fanggang Ren, Jiejie Song, Zhe Wang, Ting Gao, Chenglong Xiong, Haoying Yu, Tianyi Xin, Victor A. Albert, Giovanni Giuliano, Shilin Chen, Jingyuan Song
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-9-535

Insulin-like growth factor-1 coordinately induces the expression of fatty acid and cholesterol biosynthetic genes in murine C2C12 myoblasts
Cited by: 20
Author(s): C. Ramana Bhasker, Theodore Friedmann
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12864-017-3908-y

Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Cited by: 37
Author(s): Wei Wang, Wei Jiang, Juge Liu, Yang Li, Junyi Gai
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1828-2

Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah)
Cited by: 98
Author(s): Choo Hock Tan, Kae Yi Tan, Shin Yee Fung, Nget Hong Tan
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-15-938

RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages
Cited by: 15
Author(s): Nikole E. Kimes, Mario López‐Pérez, Eva Ausó, Rohit Ghai, Francisco Rodrı́guez-Valera
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-020-01803-w

Growth inhibition and metabolomic analysis of Xanthomonas oryzae pv. oryzae treated with resveratrol
Cited by: 13
Author(s): Huai-Zhi Luo, Ying Guan, Rui Yang, Guoliang Qian, Xianhui Yang, Junsong Wang, Ai‐Qun Jia
Software Mentions: 1
Published: over 4 years ago

10.1186/s12882-019-1507-7

A novel single amino acid deletion impairs fibronectin function and causes familial glomerulopathy with fibronectin deposits: case report of a family
Cited by: 5
Author(s): Maria Luíza Gonçalves dos Reis Monteiro, Fabiano Bichuette Custódio, Precil Diego Miranda de Menezes Neves, Frederico Moraes Ferreira, Elieser Hitoshi Watanabe, Antônio Marcondes Lerário, Liliane Silvano Araújo, Bruno Eduardo Pedroso Balbo, Vívian Christine Dourado Pinto, Lívia Maria Gruli Barbosa, Vilmar de Paiva Marques, Juliana Reis Machado, Marlene Antônia dos Reis, Luiz Fernando Onuchic
Software Mentions: 1
Published: over 5 years ago

10.1186/s12883-017-0854-x

Survival prediction in Amyotrophic lateral sclerosis based on MRI measures and clinical characteristics
Cited by: 67
Author(s): Christina Schuster, Orla Hardiman, Peter Bede
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-2298-5

Genome-wide analysis of RopGEF gene family to identify genes contributing to pollen tube growth in rice (Oryza sativa)
Cited by: 20
Author(s): Eui Jung Kim, Sung Wook Park, Woo Jong Hong, Jeniffer Silva, Wanqi Liang, Dabing Zhang, Ki Hong Jung, Yu Jin Kim
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12888-020-02567-3

Gray-matter structure in long-term abstinent methamphetamine users
Cited by: 9
Author(s): Lili Nie, Zeyong Zhao, Xiantao Wen, Wei Luo, Tao Ju, Anlian Ren, Binbin Wu, Jing Li
Software Mentions: 1
Published: over 4 years ago

10.3762/bjoc.15.184

Inherent atomic mobility changes in carbocation intermediates during the sesterterpene cyclization cascade
Cited by: 6
Author(s): Hajime Sato, Tsutomu Mitsuhashi, Mami Yamazaki, Ikuro Abe, Masanobu Uchiyama
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630014060

Agemone mexicana flavanones; apposite inverse agonists of the β2-adrenergic receptor in asthma treatment
Cited by: 6
Author(s): Gabriel O Eniafe, Damilohun Samuel Metibemu, Olaposi Idowu Omotuyi, Adewale J Ogunleye, Olumide K Inyang, Niyi Samuel Adelakun, Yakubu O Adeniran, Bamidele Adewumi, Ojochenemi A. Enejoh, Joseph O Osunmuyiwa, Sidiqat A. Shodehinde, Oluwatoba Emmanuel Oyeneyin
Software Mentions: 1
Published: almost 7 years ago

10.6026/97320630016323

Modelling, docking and simulation analysis of Bisphenol A interaction with laccase from Trichoderma
Cited by: 3
Author(s): Sankar Ganesh Ramakrishnan, Muthusaravanan Sivaramakrishnan, Dhrisya Chenthamara, Ram Kothandan, K. Swaminathan, S. Sadhasivam
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/5568980

Combining Well-Tempered Metadynamics Simulation and SPR Assays to Characterize the Binding Mechanism of the Universal T-Lymphocyte Tetanus Toxin Epitope TT830-843
Cited by: 1
Author(s): Artur M. L. Brandt, Rodrigo Nunes Rodrigues-da-Silva, Josué da Costa Lima-Junior, Carlos Roberto Alves, Franklin Souza-Silva
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/7272960

A Three Protein-Coding Gene Prognostic Model Predicts Overall Survival in Bladder Cancer Patients
Cited by: 6
Author(s): Xianghui Ning, Yuanyuan Qi, Fang-Xin Wang, Song-Chao Li, Zhang Jia, Jinjian Yang
Software Mentions: 1
Published: about 4 years ago

10.3390/biom11071048

Interference of Polydatin/Resveratrol in the ACE2:Spike Recognition during COVID-19 Infection. A Focus on Their Potential Mechanism of Action through Computational and Biochemical Assays
Cited by: 20
Author(s): Fulvio Perrella, Federico Coppola, Alessio Petrone, Chiara Platella, Daniela Montesarchio, Annarita Stringaro, Giampietro Ravagnan, Maria Pia Fuggetta, Nadia Rega, Domenica Musumeci
Software Mentions: 1
Published: over 3 years ago

10.3390/biom10081114

Predicted Hotspot Residues Involved in Allosteric Signal Transmission in Pro-Apoptotic Peptide—Mcl1 Complexes
Cited by: 2
Author(s): Parthiban Marimuthu, Jamoliddin Razzokov, Kalaimathy Singaravelu, Annemie Bogaerts
Software Mentions: 1
Published: over 4 years ago

10.3390/bios10060071

A Capillary-Perfused, Nanocalorimeter Platform for Thermometric Enzyme-Linked Immunosorbent Assay with Femtomole Sensitivity
Cited by: 2
Author(s): Evan Kazura, Ray Mernaugh, Franz Baudenbacher
Software Mentions: 1
Published: over 4 years ago

10.1002/brb3.154

Quantification of subcortical gray-matter vascularization using 7 Tesla time-of-flight angiography
Cited by: 3
Author(s): Mathias Laurig, Xinyang Liu, Michael Wyss, Anton Gietl, Lena Jellestad, Roger M. Nitsch, Klaas P. Prüssmann, Christoph Höck, Paul G. Unschuld
Software Mentions: 1
Published: over 11 years ago

10.1002/brb3.1413

Cortical morphometry and structural connectivity relate to executive function and estradiol level in healthy adolescents
Cited by: 7
Author(s): Teodora Stoica, Lindsay K. Knight, Farah Naaz, Melina Ramic, Brendan E. Depue
Software Mentions: 1
Published: about 5 years ago

10.3390/life7020019

Small and Random Peptides: An Unexplored Reservoir of Potentially Functional Primitive Organocatalysts. The Case of Seryl-Histidine
Cited by: 35
Author(s): Rafał Wieczorek, Katarzyna P. Adamala, Tecla Gasperi, Fabio Polticelli, Pasquale Stano
Software Mentions: 1
Published: over 7 years ago

10.3390/md19050242

Dieckol and Its Derivatives as Potential Inhibitors of SARS-CoV-2 Spike Protein (UK Strain: VUI 202012/01): A Computational Study
Cited by: 18
Author(s): Mohammad Aatif, Ghazala Muteeb, Ali Ibrahim Al-Sultan, Adil Alshoaibi, Bachir Yahia Khelif
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo11060403

A Metabolic Choreography of Maize Plants Treated with a Humic Substance-Based Biostimulant under Normal and Starved Conditions
Cited by: 19
Author(s): Kgalaletso Othibeng, Lerato Nephali, Anza-Tshilidzi Ramabulana, Paul A. Steenkamp, Daniel Petras, Kyo Bin Kang, Hugo Opperman, Johan Huyser, Fidele Tugizimana
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo11070437

Urinary Metabolites Reveal Hyperinsulinemia and Insulin Resistance in Polycystic Ovarian Syndrome (PCOS)
Cited by: 8
Author(s): Anna Maria Fulghesu, Cristina Piras, Angelica Dessì, Claudia Succu, Luigi Atzori, Roberta Pintus, Cecilia Gentile, Stefano Angioni, Vassilios Fanos
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8091344

Catabolic Reductive Dehalogenase Substrate Complex Structures Underpin Rational Repurposing of Substrate Scope
Cited by: 4
Author(s): Tom Halliwell, Karl Fisher, K.A.P. Payne, Stephen E. J. Rigby, D. Leys
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9010130

Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients
Cited by: 7
Author(s): Laura Veschetti, Angela Sandri, Cristina Patuzzo, Paola Melotti, Giovanni Malerba, Maria M. Lleò
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13041-017-0288-9

Rapid and stable changes in maturation-related phenotypes of the adult hippocampal neurons by electroconvulsive treatment
Cited by: 34
Author(s): Yuki Imoto, Eri Segi-Nishida, Hidenori Suzuki, Katsunori Kobayashi
Software Mentions: 1
Published: almost 8 years ago

10.1186/1476-4598-13-201

Thymoquinone-induced conformational changes of PAK1 interrupt prosurvival MEK-ERK signaling in colorectal cancer
Cited by: 47
Author(s): Chirine El-Baba, M. Vijayalakshmi, Fabian Fahlbusch, Suma Mohan, Tilman T. Rau, Hala Gali‐Muhtasib, Regine Schneider‐Stock
Software Mentions: 1
Published: over 10 years ago

10.1007/s11030-021-10214-6

Structure-based identification of SARS-CoV-2 main protease inhibitors from anti-viral specific chemical libraries: an exhaustive computational screening approach
Cited by: 19
Author(s): Shovonlal Bhowmick, Achintya Saha, Sameh M. Osman, Fatmah Ali Alasmary, Tahani Mazyad Almutairi, Ataul Islam
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules24071380

In Vitro and in Silico Evaluation of Bikaverin as a Potent Inhibitor of Human Protein Kinase CK2
Cited by: 14
Author(s): Samer Haidar, Dagmar Aichele, Robin Birus, Janine Hielscher, Tuomo Laitinen, Antti Poso, Joachim Jose
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26082298

NMR-Based Metabolomic Analyses to Identify the Effect of Harvesting Frequencies on the Leaf Metabolite Profile of a Moringa oleifera Cultivar Grown in an Open Hydroponic System
Cited by: 6
Author(s): Lavhelesani Rodney Managa, E.S. du Toit, Gerhard Prinsloo
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26165039

Chemoinformatics Analyses of Tau Ligands Reveal Key Molecular Requirements for the Identification of Potential Drug Candidates against Tauopathies
Cited by: 4
Author(s): Luca Pinzi, Annachiara Tinivella, Giulio Rastelli
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26123772

Computational Insights on the Potential of Some NSAIDs for Treating COVID-19: Priority Set and Lead Optimization
Cited by: 55
Author(s): Ayman Abo Elmaaty, Mohammed I. A. Hamed, Muhammad I. Ismail, Eslam B. Elkaeed, Hamada S. Abulkhair, Muhammad Khattab, Ahmed A. Al‐Karmalawy
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules25010091

The Significance of Halogen Bonding in Ligand–Receptor Interactions: The Lesson Learned from Molecular Dynamic Simulations of the D4 Receptor
Cited by: 14
Author(s): Rafał Kurczab, Katarzyna Kucwaj-Brysz, Paweł Śliwa
Software Mentions: 1
Published: almost 5 years ago

10.3390/vaccines9030283

Zika E Glycan Loop Region and Guillain–Barré Syndrome-Related Proteins: A Possible Molecular Mimicry to Be Taken in Account for Vaccine Development
Cited by: 3
Author(s): Grégorie Lebeau, Étienne Frumence, Jonathan Turpin, Floran Begue, Jean-Jacques Hoarau, Gilles Gadéa, Pascale Krejbich-Trotot, Philippe Desprès, Wildriss Viranaïcken
Software Mentions: 1
Published: over 3 years ago

10.3390/v7082828

Characterization of the HCMV-Specific CD4 T Cell Responses that Are Associated with Protective Immunity
Cited by: 19
Author(s): Marie Wunsch, Wenji Zhang, Jodi Hanson, Richard Caspell, Alexey Y. Karulin, Mascha S. Recks, Stefanie Küerten, Srividya Sundararaman, Paul Lehmann
Software Mentions: 1
Published: over 9 years ago

10.1186/s40695-020-00055-y

Cortical and subcortical changes following sphenopalatine ganglion blocks in chronic migraine with medication overuse headache: a preliminary longitudinal study
Cited by: 7
Author(s): Roger Newman‐Norlund, Chris Rorden, Nasim Maleki, M. Patel, Brian T. Cheng, X. Michelle Androulakis
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens9020072

Hypermutation as an Evolutionary Mechanism for Achromobacter xylosoxidans in Cystic Fibrosis Lung Infection
Cited by: 21
Author(s): Laura Veschetti, Angela Sandri, Helle Krogh Johansen, Maria del Mar Lleὸ, Giovanni Malerba
Software Mentions: 1
Published: almost 5 years ago

10.3390/ph13090251

Natural Products: A Potential Source of Malaria Transmission Blocking Drugs?
Cited by: 17
Author(s): Phanankosi Moyo, Grace Mugumbate, Jacobus Nicolaas Eloff, Abraham I. Louw, Vinesh Maharaj, Lyn‐Marié Birkholtz
Software Mentions: 1
Published: about 4 years ago

10.3390/pharmaceutics12080715

Co-Amorphization of Kanamycin with Amino Acids Improves Aerosolization
Cited by: 10
Author(s): Bishal Raj Adhikari, Kārlis Bērziņš, Sara J. Fraser‐Miller, Keith C. Gordon, Shyamal C. Das
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1004018

Protein-Protein Docking with Dynamic Residue Protonation States
Cited by: 16
Author(s): Krishna Praneeth Kilambi, K. Mohan Reddy, Jeffrey J. Gray
Software Mentions: 1
Published: almost 10 years ago