Projects: pypi: stdpopsim
https://packages.ecosyste.ms/registries/pypi.org/packages/stdpopsim
A library of population genetic simulation models
4 versions
Latest release: over 2 years ago
76 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
PopSim Consortium (organization)
A community-driven effort to standardize population genetics Institutional
A community-driven effort to standardize population genetics Institutional
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+15
Institutional repository owner
Repository owned by research institution -
+4
Science terms in README
2 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning stdpopsim 6
10.1371/journal.pgen.1009303
Creating artificial human genomes using generative neural networksCited by: 51
Author(s): Burak Yelmen, Aurélien Decelle, Linda Ongaro, Davide Marnetto, Corentin Tallec, Francesco Montinaro, Cyril Furtlehner, Luca Pagani, Flora Jay
Software Mentions: 7
Published: over 4 years ago
10.7554/eLife.54967
A community-maintained standard library of population genetic modelsCited by: 96
Author(s): Jeffrey R. Adrion, Christopher B. Cole, Noah Dukler, Jared Galloway, Ariella L. Gladstein, Graham Gower, Christopher C. Kyriazis, Aaron P. Ragsdale, Georgia Tsambos, Franz Baumdicker, Jedidiah Carlson, Reed A. Cartwright, Arun Durvasula, Ilan Gronau, Bernard Kim, Patrick McKenzie, Philipp W. Messer, Ekaterina Noskova, Diego Ortega Del Vecchyo, Fernando Racimo, Travis J Struck, Simon Gravel, Ryan N. Gutenkunst, Kirk E. Lohmueller, Peter L. Ralph, Daniel R. Schrider, Adam Siepel, Jerome Kelleher, Andrew D. Kern
Software Mentions: 7
Published: about 5 years ago
10.7554/eLife.64669
Detecting adaptive introgression in human evolution using convolutional neural networksCited by: 52
Author(s): Graham Gower, Pablo Iáñez Picazo, Matteo Fumagalli, Fernando Racimo
Software Mentions: 5
Published: about 4 years ago
10.1093/molbev/msaa305
dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing UnitsCited by: 13
Author(s): Ryan N. Gutenkunst
Software Mentions: 3
Published: over 4 years ago
10.1093/molbev/msab174
Inferring Population Histories for Ancient Genomes Using Genome-Wide GenealogiesCited by: 26
Author(s): Leo Speidel, Lara M. Cassidy, R. W. Davies, Garrett Hellenthal, Pontus Skoglund, Simon Myers
Software Mentions: 2
Published: about 4 years ago
10.7554/eLife.60107
A variant-centric perspective on geographic patterns of human allele frequency variationCited by: 29
Author(s): Arjun Biddanda, Daniel P. Rice, John Novembre
Software Mentions: 1
Published: over 4 years ago