10.3389/fmicb.2019.02372

Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes
Cited by: 25
Author(s): Laura Baldo, Joan Lluís Riera, Walter Salzburger, Marta Barluenga
Software Mentions: 5
Published: about 7 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.03000

Machine Learning Approach for Candida albicans Fluconazole Resistance Detection Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
Cited by: 26
Author(s): Margot Delavy, Lorenzo Cerutti, Antony Croxatto, Guy Prod’hom, Dominique Sanglard, Gilbert Greub, Alix T. Coste
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2017.00526

Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus
Cited by: 83
Author(s): Eva Nováková, Douglas C. Woodhams, Sonia M. Rodríguez‐Ruano, Robert M. Brucker, Jonathan W. Leff, Amin Maharaj, Amir Almasi‐Hashiani, Rob Knight, James A. Scott
Software Mentions: 5
Published: over 9 years ago

10.1186/s12889-021-10989-1

Health indicators on adolescents reveal disparity and inequality on regional and national levels
Cited by: 3
Author(s): Mengqiao Wang
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7715

Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia
Cited by: 14
Author(s): Ze Ren, Hongkai Gao
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0051292

Characterisation and Validation of Insertions and Deletions in 173 Patient Exomes
Cited by: 9
Author(s): Francesco Lescai, Silvia Bonfiglio, Chiara Bacchelli, Estelle Chanudet, Aoife Waters, Sanjay M. Sisodiya, Dalia Kasperavičiūtė, Julie Williams, Denise Harold, John Hardy, Robert Kleta, Sebahattin Çırak, Richard Williams, John C. Achermann, John Anderson, David P. Kelsell, Tom Vulliamy, Henry Houlden, Nicholas W. Wood, Una Marie Sheerin, Gian Paolo Tonini, Donna S. Mackay, Khalid Hussain, Jane C. Sowden, Veronica A. Kinsler, Justyna Osinska, Tony Brooks, Mike Hubank, Philip L. Beales, Elia Stupka
Software Mentions: 5
Published: almost 14 years ago

10.1186/s12888-020-02824-5

Idiographic analyses of motivation and related processes in participants with schizophrenia following a therapeutic intervention for negative symptoms
Cited by: 3
Author(s): Bénédicte Thonon, Evelyne van Aubel, Ginette Lafit, Clara Della Libera, Frank Larøi
Software Mentions: 5
Published: about 6 years ago

10.7554/eLife.54880

Transient intracellular acidification regulates the core transcriptional heat shock response
Cited by: 45
Author(s): Catherine G. Triandafillou, Christopher D. Katanski, Aaron R. Dinner, D. Allan Drummond
Software Mentions: 5
Published: about 6 years ago

10.1186/s12885-017-3777-4

Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer
Cited by: 28
Author(s): Mingshan Liu, Yang Liu, Jiabo Di, Zhe Su, Hong Yang, Beihai Jiang, Zaozao Wang, Zhen Meng, Fan Bai, Xiangqian Su
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12919-018-0130-0

Network analysis of drug effect on triglyceride-associated DNA methylation
Cited by: 5
Author(s): Elise Lim, Hanfei Xu, Peitao Wu, Daniel Posner, Jiayi Wu, Gina M. Peloso, Achilleas Pitsillides, Anita L. DeStefano, L. Adrienne Cupples, Ching‐Ti Liu
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2018.01901

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere
Cited by: 59
Author(s): Lavanya Challagundla, Jinnethe Reyes, Iftekhar Rafiqullah, Daniel O. Sordelli, Gabriela Echániz-Avilés, María Elena Velázquez-Meza, Santiago Castillo-Ramírez, Nahuel Fittipaldi, Michael Feldgarden, Sinéad B. Chapman, Michael S. Calderwood, Lina P Carvajal, Sandra Rincón, Blake Hanson, Paul J. Planet, César A. Arias, Lorena Díaz, D. Ashley Robinson
Software Mentions: 5
Published: about 8 years ago

10.7554/eLife.60090

The organizational principles of de-differentiated topographic maps in somatosensory cortex
Cited by: 11
Author(s): Peng Liu, Anastasia Chrysidou, Juliane Doehler, Martin N. Hebart, Thomas Wolbers, Esther Kuehn
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.02273

Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre
Cited by: 15
Author(s): Daniel Mende, Dominique Le Bœuf, Edward F. DeLong
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.9722

Population genomics reveals a mismatch between management and biological units in green abalone (<i>Haliotis fulgens</i>)
Cited by: 9
Author(s): Paulina Mejía-Ruíz, Ricardo Pérez‐Enríquez, Jorge Alberto Mares-Mayagoitia, Fausto Valenzuela‐Quiñonez
Software Mentions: 5
Published: about 6 years ago

10.3390/ijerph18062832

Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin
Cited by: 17
Author(s): Srimanti Duttagupta, Soumendra N. Bhanja, Avishek Dutta, S. Sarkar, M. Chakraborty, Ashok Ghosh, Debapriya Mondal, Abhijit Mukherjee
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.02944

Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi
Cited by: 12
Author(s): Gian Maria Niccolò Benucci, Delaney Burnard, Lara D. Shepherd, Gregory Bonito, Andrew B. Munkacsi
Software Mentions: 5
Published: almost 7 years ago

10.1186/1471-2229-8-99

Regulon organization of Arabidopsis
Cited by: 95
Author(s): Wieslawa I. Mentzen, Eve Syrkin Wurtele
Software Mentions: 5
Published: almost 19 years ago

10.3389/fmicb.2021.711359

Circulating Levels of the Short-Chain Fatty Acid Acetate Mediate the Effect of the Gut Microbiome on Visceral Fat
Cited by: 67
Author(s): Ana Nogal, Panayiotis Louca, Mengjie Zhang, Philippa M Wells, Claire J. Steves, Tim D. Spector, Mario Falchi, Ana M. Valdes, Cristina Menni
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0202970

Effects of alpha-(1,2)-fucosyltransferase genotype variants on plasma metabolome, immune responses and gastrointestinal bacterial enumeration of pigs pre- and post-weaning
Cited by: 13
Author(s): Ann Sofie Riis Poulsen, Diana Luise, Mihai Victor Curtasu, Sugiharto Sugiharto, Nuria Canibe, Paolo Trevisi, Charlotte Lauridsen
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0204963

Eye behavior does not adapt to expected visual distraction during internally directed cognition
Cited by: 15
Author(s): Sonja Annerer‐Walcher, Christof Körner, Mathias Benedek
Software Mentions: 5
Published: about 8 years ago

10.3390/ijerph17145138

Exercise, Comorbidities, and Health-Related Quality of Life in People Living with HIV: The HIBES Cohort Study
Cited by: 6
Author(s): Philipp Zech, Felipe Barreto Schuch, Camilo Germán Alberto Pérez Chaparro, Maria Kangas, Michael A. Rapp, Andreas Heißel
Software Mentions: 5
Published: over 6 years ago

10.1186/s40425-018-0328-8

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients
Cited by: 140
Author(s): Priyanka B. Subrahmanyam, Zhiwan Dong, Daniel Gusenleitner, Anita Giobbie‐Hurder, Mariano Severgnini, Jun Zhou, Michael P. Manos, Lauren M. Eastman, Holden T. Maecker, F. Stephen Hodi
Software Mentions: 5
Published: over 8 years ago

10.1155/2017/4074137

An HTML5-Based Pure Website Solution for Rapidly Viewing and Processing Large-Scale 3D Medical Volume Reconstruction on Mobile Internet
Cited by: 9
Author(s): Liang Qiao, Xin Chen, Ye Zhang, Jingna Zhang, Yi Wu, Ying Liu, Xue-Mei Mo, Wei Chen, Bing Xie, Mingguo Qiu
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0175464

Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics
Cited by: 12
Author(s): Gianluca Mazzoni, Suraya Mohamad Salleh, Kristine Freude, Helene Helboe Pedersen, Lotte Stroebech, Henrik Callesen, Poul Hyttel, Haja N. Kadarmideen
Software Mentions: 5
Published: over 9 years ago

10.3389/fimmu.2020.588405

Impact of Persistent Anemia on Systemic Inflammation and Tuberculosis Outcomes in Persons Living With HIV
Cited by: 16
Author(s): Fernanda O. Demitto, Mariana Araújo-Pereira, Carolina AranaStanis Schmaltz, Flávia Marinho Sant’Anna, María B. Arriaga, Bruno B. Andrade, Valeria Rolla
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: about 7 years ago

10.1155/2018/7351902

Elevated and Correlated Expressions of miR-24, miR-30d, miR-146a, and SFRP-4 in Human Abdominal Adipose Tissue Play a Role in Adiposity and Insulin Resistance
Cited by: 32
Author(s): Yury O. Nunez Lopez, Gabriella Garufi, Magdalena Pasarica, Attila A. Seyhan
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.jhevol.2017.07.015

The evolution of the platyrrhine talus: A comparative analysis of the phenetic affinities of the Miocene platyrrhines with their modern relatives
Cited by: 8
Author(s): Thomas A. Püschel, Justin T. Gladman, René Bobe, William I. Sellers
Software Mentions: 5
Published: about 9 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: about 9 years ago

10.1186/s12866-018-1221-9

Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Cited by: 50
Author(s): Deni Ribičić, Kelly M. McFarlin, Roman Netzer, Odd Gunnar Brakstad, Anderson M. Winkler, Mimmi Throne-Holst, Trond Røvik Størseth
Software Mentions: 5
Published: about 8 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: over 6 years ago

10.1186/s13071-021-04984-z

Determinants of Aedes mosquito density as an indicator of arbovirus transmission risk in three sites affected by co-circulation of globally spreading arboviruses in Colombia, Ecuador and Argentina
Cited by: 5
Author(s): Benoit Talbot, Beate Sander, Varsovia Cevallos, Camila González, Denisse Benítez, Claudio Carissimo, María Cristina Ferro, Neris Javier Gauto, Sergio Litwiñiuk, Karen M. Lopez, Mario I. Ortiz, Patricio Ponce, Stephany D. Villota, Fabian Zelaya, Mauricio Espinel, Jianhong Wu, Marcos Mateo Miretti, Manisha A. Kulkarni
Software Mentions: 5
Published: about 5 years ago

10.3390/ijerph13111091

Arsenic and Heavy Metal Contamination in Soils under Different Land Use in an Estuary in Northern Vietnam
Cited by: 31
Author(s): Thinh Nguyen Van, Akinori Ozaki, Hoang Nguyen Tho, Anh Nguyen Duc, Yen Tran Thi, Kiyoshi Kurosawa
Software Mentions: 5
Published: almost 10 years ago

10.7150/ijbs.45050

A Novel Ferroptosis-related Gene Signature for Overall Survival Prediction in Patients with Hepatocellular Carcinoma
Cited by: 342
Author(s): Jie Liang, De-Shen Wang, Haocheng Lin, Xiuxing Chen, Hui Yang, Yun Zheng, Yuhong Li
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2021.644516

G2S: A New Deep Learning Tool for Predicting Stool Microbiome Structure From Oral Microbiome Data
Cited by: 5
Author(s): Simone Rampelli, Marco Fabbrini, Marco Candela, Elena Biagi, Patrizia Brigidi, Silvia Turroni
Software Mentions: 5
Published: over 5 years ago

10.1186/s13071-020-04221-z

Measuring mosquito control: adult-mosquito catches vs egg-trap data as endpoints of a cluster-randomized controlled trial of mosquito-disseminated pyriproxyfen
Cited by: 9
Author(s): Klauss Kleydmann Sabino Garcia, Hanid S. Versiani, Taís O. Araújo, João Paulo Araújo da Conceição, Marcos Takashi Obara, Walter Massa Ramalho, Thaís Tâmara Castro Minuzzi-Souza, Gustavo D. Gomes, Elisa Neves Vianna, Renata Velôzo Timbó, Vinicios G. C. Barbosa, Maridalva S. P. Rezende, Luciana P. F. Martins, Glauco O. Macedo, Bruno Lopes Carvalho, Israel Martins Moreira, Lorrainy A. Bartasson, Nadjar Nitz, Sérgio Luíz Bessa Luz, Rodrigo Gurgel-Gonçalves, Fernando Abad‐Franch
Software Mentions: 5
Published: over 6 years ago

10.1186/s12866-020-01795-7

Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens
Cited by: 15
Author(s): Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Kilaza Samson Mwaikono, Elloise du Toit, Heather J. Zar, Mark P. Nicol
Software Mentions: 5
Published: over 6 years ago

10.1038/s41396-021-00923-z

Maize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome
Cited by: 38
Author(s): Alonso Favela, Martin Bohn, Angela D. Kent
Software Mentions: 5
Published: over 5 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.648701

Multiomics Analysis Reveals Molecular Abnormalities in Granulosa Cells of Women With Polycystic Ovary Syndrome
Cited by: 14
Author(s): Ru-Song Zhao, Yonghui Jiang, Shigang Zhao, Han Zhao
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0202584

Selection on the Colombian paso horse's gaits has produced kinematic differences partly explained by the DMRT3 gene
Cited by: 14
Author(s): Miguel Novoa-Bravo, Kim Jäderkvist Fegraeus, Marie Rhodin, Eric Strand, Luis F. García, Gabriella Lindgren
Software Mentions: 5
Published: about 8 years ago

10.3390/jof7080587

Soil Mycobiome Is Shaped by Vegetation and Microhabitats: A Regional-Scale Study in Southeastern Brazil
Cited by: 7
Author(s): Danielle Hamae Yamauchi, Hans Garcia Garces, Marcus de Melo Teixeira, Gabriel Fellipe Barros Rodrigues, Leila Sabrina Ullmann, Adalberto Garcia Garces, Flávia Hebeler-Barbosa, Eduardo Bagagli
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-020-00040-w

The microbiome of captive hamadryas baboons
Cited by: 6
Author(s): Xuanji Li, Urvish Trivedi, Asker Brejnrod, Gisle Vestergaard, Martin Steen Mortensen, Mads F. Bertelsen, Søren J. Sørensen
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2021.693541

The Evolutionary Patterns of Genome Size in Ensifera (Insecta: Orthoptera)
Cited by: 15
Author(s): Hao Yuan, Yuan Huang, Ying Mao, Nan Zhang, Yimeng Nie, Xue Zhang, Yafu Zhou, Shao-Li Mao
Software Mentions: 5
Published: over 5 years ago

10.3390/v12121424

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index
Cited by: 3
Author(s): Joan Martí-Carreras, Alejandro Rafael Gener, Sierra Miller, Anderson F. Brito, Christiam Camacho, Ryan Connor, Ward Deboutte, Cody Glickman, David M. Kristensen, Wynn K. Meyer, Sejal Modha, Alexis L. Norris, Surya Saha, Anna K. Belford, Evan Biederstedt, J. Rodney Brister, Jan P. Buchmann, Nicholas P. Cooley, Robert A. Edwards, Kiran Javkar, Michael Muchow, Harihara Subrahmaniam Muralidharan, Charles Pepe-Ranney, Nidhi Shah, Migun Shakya, Michael J. Tisza, Benjamin J. Tully, Bert Vanmechelen, Valerie Christine Virta, Jake L. Weissman, Vadim Zalunin, Alexandre Efremov, Ben Busby
Software Mentions: 5
Published: almost 6 years ago

10.3390/v12111204

Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake
Cited by: 4
Author(s): Catherine Girard, Valérie Langlois, Adrien Vigneron, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 5
Published: about 6 years ago

10.1128/mBio.00521-21

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria
Cited by: 26
Author(s): Alexander L. Jaffe, Alex D. Thomas, Christine He, Ray Keren, Luis E. Valentin-Alvarado, Patrick Munk, Keith Bouma‐Gregson, Ibrahim Farag, Yuki Amano, Rohan Sachdeva, Patrick T. West
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0256568

The absence of fans removes the home advantage associated with penalties called by National Hockey League referees
Cited by: 6
Author(s): Joël Guérette, Caroline Blais, Daniel Fiset
Software Mentions: 5
Published: about 5 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.03042-19

Quantitative Framework for Model Evaluation in Microbiology Research Using <i>Pseudomonas aeruginosa</i> and Cystic Fibrosis Infection as a Test Case
Cited by: 83
Author(s): Daniel M. Cornforth, Frances L. Diggle, Jeffrey A. Melvin, Jennifer M. Bomberger, Marvin Whiteley
Software Mentions: 5
Published: over 6 years ago

10.1186/s12874-020-01201-w

Re-evaluation of the comparative effectiveness of bootstrap-based optimism correction methods in the development of multivariable clinical prediction models
Cited by: 33
Author(s): Katsuhiro Iba, Tomohiro Shinozaki, Kazushi Maruo, Hisashi Noma
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12874-018-0531-9

Meta-analysis of binary outcomes via generalized linear mixed models: a simulation study
Cited by: 31
Author(s): Ilyas Bakbergenuly, Elena Kulinskaya
Software Mentions: 5
Published: over 8 years ago

10.1128/mBio.03186-19

Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis
Cited by: 86
Author(s): Minsuk Kim, Emily Vogtmann, David A. Ahlquist, Mary E. Devens, John B. Kisiel, William R. Taylor, Bryan A. White, Vanessa L. Hale, Jaeyun Sung, Nicholas Chia, Rashmi Sinha, Jun Chen
Software Mentions: 5
Published: over 6 years ago

10.7150/thno.57775

Machine learning-assisted immune profiling stratifies peri-implantitis patients with unique microbial colonization and clinical outcomes
Cited by: 20
Author(s): Chin-Wei Wang, Yuning Hao, Riccardo Di Gianfilippo, James V. Sugai, Jiaqian Li, Wang Gong, Kenneth S. Kornman, Hom‐Lay Wang, Nobuhiko Kamada, Yuying Xie, William V. Giannobile, Yu Lei
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41398-021-01410-x

Obsessive–compulsive symptoms and information seeking during the Covid-19 pandemic
Cited by: 22
Author(s): Alisa M. Loosen, Vasilisa Skvortsova, Tobias U. Hauser
Software Mentions: 5
Published: over 5 years ago

10.3389/fbioe.2017.00084

Meta-Analysis of Aedes aegypti Expression Datasets: Comparing Virus Infection and Blood-Fed Transcriptomes to Identify Markers of Virus Presence
Cited by: 11
Author(s): Kiyoshi F. Fukutani, José Irahe Kasprzykowski, Alexandre Rossi Paschoal, Matheus de Souza Gomes, Aldina Barral, Camila I. de Oliveira, Pablo Ivan Pereira Ramos, Artur T. L. Queiroz
Software Mentions: 5
Published: almost 9 years ago

10.3389/fcell.2021.630355

Application of Immune Infiltration Signature and Machine Learning Model in the Differential Diagnosis and Prognosis of Bone-Related Malignancies
Cited by: 9
Author(s): Guoqi Li, Yi‐Kai Wang, Hao Zhou, Lin-Guang Jin, Chunyu Wang, Mugahed Abdullah Hasan Albahde, Yan Wu, Hengyuan Li, Wenkan Zhang, Binghao Li
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-020-00058-0

Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides
Cited by: 1
Author(s): Bianca R. P. Brown, Joaquin C. B. Nunez, David M. Rand
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12911-017-0549-7

Association between borderline dysnatremia and mortality insight into a new data mining approach
Cited by: 18
Author(s): Yannick Girardeau, Anne‐Sophie Jannot, Gilles Châtellier, Olivier Saint-Jean
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-021-98782-3

Evaluation of JATSdecoder as an automated text extraction tool for statistical results in scientific reports
Cited by: 5
Author(s): Ingmar Böschen
Software Mentions: 5
Published: about 5 years ago

10.15252/msb.20209698

<scp>CEN</scp> ‐tools: an integrative platform to identify the contexts of essential genes
Cited by: 9
Author(s): Sumana Sharma, Cansu Dinçer, Paula Weidemüller, Gavin J. Wright, Evangelia Petsalaki
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-98176-5

Flow cytometry method for absolute counting and single-cell phenotyping of mycobacteria
Cited by: 5
Author(s): David Barr, Charles Onyango Omollo, Mandy K. Mason, Anastasia Koch, Robert J. Wilkinson, David G. Lalloo, Graeme Meintjes, Valerie Mizrahi, Digby F. Warner, Gerry Davies
Software Mentions: 5
Published: about 5 years ago

10.1002/1878-0261.12070

Synergistic activity of everolimus and 5-aza-2′-deoxycytidine in medullary thyroid carcinoma cell lines
Cited by: 23
Author(s): Giovanna Mantovani, Alessandra Dicitore, Daniele Pepe, Davide Gentilini, Elisa Grassi, Maria Orietta Borghi, Giulia Gelmini, Maria Celeste Cantone, Germano Gaudenzi, Gabriella Misso, Anna Maria Di Blasio, Leo J. Hofland, Michele Caraglia, Luca Persani
Software Mentions: 5
Published: over 9 years ago

10.1002/1878-0261.12957

Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder
Cited by: 5
Author(s): Maria V. Luna‐Velez, Jelmer Dijkstra, Marina Augusto Heuschkel, Frank Smit, Guillaume van de Zande, Dominique Smeets, J.P. Michiel Sedelaar, Michiel Vermeulen, Gerald W. Verhaegh, Jack A. Schalken
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-98300-5

Quantifying and predicting antimicrobials and antimicrobial resistance genes in waterbodies through a holistic approach: a study in Minnesota, United States
Cited by: 4
Author(s): Irene Bueno, Amanda Beaudoin, William A. Arnold, Taegyu Kim, Lara Frankson, Timothy M. LaPara, Kaushi S. T. Kanankege, Kristine H. Wammer, Randall S. Singer
Software Mentions: 5
Published: about 5 years ago

10.3390/s19030626

Understanding Eye Movement Signal Characteristics Based on Their Dynamical and Fractal Features
Cited by: 6
Author(s): Katarzyna Harężlak, Paweł Kasprowski
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.00180-20

Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: over 6 years ago

10.1186/s12879-016-1702-0

The role of hand hygiene in controlling norovirus spread in nursing homes
Cited by: 21
Author(s): Rania Assab, Laura Temime
Software Mentions: 5
Published: about 10 years ago

10.1038/s41598-021-96378-5

Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs
Cited by: 13
Author(s): Lucia Di Iorio, Manon Audax, Julie Déter, Florian Holon, Julie Lossent, Cédric Gervaise, Pierre Boissery
Software Mentions: 5
Published: about 5 years ago

10.3390/molecules26154588

Humic Acid Improves Zn Fertilization in Oxisols Successively Cultivated with Maize–Brachiaria
Cited by: 4
Author(s): Everton Geraldo de Morais, Carlos Alberto Silva, Keiji Jindo
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-51432-1

Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sediments
Cited by: 9
Author(s): Hanna Sinkko, Iina Hepolehto, Christina Lyra, Johanna M. Rinta-Kanto, Anna Villnäs, Joanna Norkko, Alf Norkko, Sari Timonen
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0089632

Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes
Cited by: 85
Author(s): Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-019-53623-2

A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
Cited by: 41
Author(s): Shijie Deng, Heidi M.-L. Wipf, Grady Pierroz, Theodore K. Raab, Rajnish Khanna, Devin Coleman‐Derr
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0251800

Comparison of machine-learning methodologies for accurate diagnosis of sepsis using microarray gene expression data
Cited by: 5
Author(s): Dominik Schaack, Markus A. Weigand, Florian Uhle
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-45950-1

The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: over 7 years ago

10.1093/molbev/msv282

Population Structure Shapes Copy Number Variation in Malaria Parasites
Cited by: 43
Author(s): Ian H. Cheeseman, Becky A. Miller, John C. Tan, Aiping Tan, Shalini Nair, Standwell C. Nkhoma, Marcos De Donato, Hectorina Rodulfo, Arjen M. Dondorp, OraLee H. Branch, Lastenia Ruiz Mesía, Paul N. Newton, Mayfong Mayxay, Alfred Amambua-Ngwa, David J. Conway, François Nosten, Michael T. Ferdig, Tim Anderson
Software Mentions: 5
Published: almost 11 years ago

10.1093/molbev/msw124

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
Cited by: 107
Author(s): Michaela Kendall, Caroline Colijn
Software Mentions: 5
Published: over 10 years ago

10.1186/s12864-015-2124-x

De novo transcriptome reconstruction and annotation of the Egyptian rousette bat
Cited by: 34
Author(s): Albert Kim Lee, Kirsten A. Kulcsar, Oliver Elliott, Hossein Khiabanian, Elyse R. Nagle, Megan E. B. Jones, Brian R. Amman, Mariano Sánchez-Lockhart, Jonathan S. Towner, Gustavo Palacios, Raúl Rabadán
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pone.0223675

Establishing an infrastructure for collaboration in primate cognition research
Cited by: 76
Author(s): Many Primates, Drew Altschul, Michael J. Beran, Manuel Bohn, Josep Call, Sarah E. DeTroy, Shona Duguid, Crystal L. Egelkamp, Claudia Fichtel, Julia Fischer, Molly Flessert, Daniel Hanuš, Daniel B. M. Haun, Lou M. Haux, R. Adriana Hernández‐Aguilar, Eva Herrmann, Lydia M. Hopper, Marine Joly, Fumihiro Kano, Stefanie Keupp, Alicia P. Melis, Alba Motes-Rodrigo, Stephen R. Ross, Alejandro Sánchez-Amaro, Yutaro Sato, Vanessa Schmitt, Manon K. Schweinfurth, Amanda M. Seed, Derry Taylor, Christoph J. Völter, Elizabeth Warren, Sarah F. Brosnan
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pbio.3001033

Ocean acidification boosts reproduction in fish via indirect effects
Cited by: 12
Author(s): Ivan Nagelkerken, Tiphaine Alemany, Julie M. Anquetin, Camilo M. Ferreira, Kim E. Ludwig, Minami Sasaki, Sean D. Connell
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-40375-2

Transcriptome analysis of rumen epithelium and meta-transcriptome analysis of rumen epimural microbial community in young calves with feed induced acidosis
Cited by: 21
Author(s): Wenli Li, S.L. Gelsinger, Andrea Edwards, Christina Riehle, Daniel C. Koch
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-42677-x

Honey bees increase their foraging performance and frequency of pollen trips through experience
Cited by: 43
Author(s): Simon Klein, Cristian Pasquaretta, Xingjian He, Clint Perry, Eirik Søvik, Jean-Marc Devaud, Andrew B. Barron, Mathieu Lihoreau
Software Mentions: 5
Published: over 7 years ago

10.3390/microorganisms8040604

Unraveling Heterogeneity of Coral Microbiome Assemblages in Tropical and Subtropical Corals in the South China Sea
Cited by: 11
Author(s): Sanqiang Gong, Xuejie Jin, Lijuan Ren, Yehui Tan, Xiaomin Xia
Software Mentions: 5
Published: over 6 years ago

10.1111/j.1462-2920.2011.02494.x

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea
Cited by: 46
Author(s): Sandra Schöttner, Barbara Pfitzner, Stefanie Grünke, Mohammed Rasheed, Christian Wild, Alban Ramette
Software Mentions: 5
Published: over 15 years ago

10.1371/journal.pone.0109229

Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin
Cited by: 28
Author(s): Daniel H. Chitwood
Software Mentions: 5
Published: about 12 years ago

10.3390/microorganisms8030404

Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica
Cited by: 13
Author(s): Maria Monteiro, Mafalda S. Baptista, Joana Séneca, Luı́s Torgo, Charles K. Lee, S. Craig Cary, Catarina Magalhães
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-25021-7

Quantitative comparison of different iron forms in the temporal cortex of Alzheimer patients and control subjects
Cited by: 39
Author(s): Marjolein Bulk, Louise van der Weerd, Wico Breimer, Н. А. Лебедев, Andrew Webb, Jelle J. Goeman, Roberta J. Ward, Martina Huber, Tjerk H. Oosterkamp, Lucia Bossoni
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-35276-9

The relative effects of forest amount, forest configuration, and urban matrix quality on forest breeding birds
Cited by: 24
Author(s): Alexandra V. Shoffner, Andrew Wilson, Wenwu Tang, Sara A. Gagné
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-19717-z

Annual shifts of flow regime alteration: new insights from the Chaishitan Reservoir in China
Cited by: 12
Author(s): Yongyong Zhang, Xiaoyan Zhai, Tongtiegang Zhao
Software Mentions: 5
Published: almost 9 years ago

10.3390/plants10061043

Genotypic Variability on Grain Yield and Grain Nutritional Quality Characteristics of Wheat Grown under Elevated CO2 and High Temperature
Cited by: 9
Author(s): Emilio L. Marcos-Barbero, Pilar Pérez Pérez, Rafael Martínez‐Carrasco, Juan B. Arellano, Rosa Morcuende
Software Mentions: 5
Published: over 5 years ago

10.1186/s13072-015-0046-0

Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia
Cited by: 16
Author(s): Jiansheng Wu, Luca Pinello, Elinor Yissachar, Jonathan W. Wischhusen, Guo‐Cheng Yuan, Charles W.M. Roberts
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-018-22734-7

Transcriptional landscape of human endogenous retroviruses (HERVs) and other repetitive elements in psoriatic skin
Cited by: 11
Author(s): Freddy Lättekivi, Sulev Kõks, Maris Keermann, Ene Reimann, Ele Prans, Kristi Abram, Helgi Silm, Gea Kõks, Külli Kingo
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2164-13-26

Postmortem cardiac tissue maintains gene expression profile even after late harvesting
Cited by: 35
Author(s): Saloni Gupta, Marc K. Halushka, Gina M. Hilton, Dan E. Arking
Software Mentions: 5
Published: almost 15 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: over 6 years ago

10.1186/s13395-017-0144-8

Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells
Cited by: 29
Author(s): Natalia Pietrosemoli, Sébastien Mella, Siham Yennek, Meryem B. Baghdadi, Hiroshi Sakai, Ramkumar Sambasivan, Francesca Pala, Daniela Di Girolamo, Shahragim Tajbakhsh
Software Mentions: 5
Published: almost 9 years ago

10.1007/s00066-019-01522-w

Tumor regression during radiotherapy for non-small cell lung cancer patients using cone-beam computed tomography images
Cited by: 5
Author(s): Janita E. van Timmeren, Wouter van Elmpt, Dirk De Ruysscher, Bart Reymen, Olfred Hansen, Carsten Brink
Software Mentions: 5
Published: about 7 years ago

10.1111/1462-2920.14498

Gut microbiota in patients after surgical treatment for colorectal cancer
Cited by: 21
Author(s): Ye Jin, Yang Liu, Lei Zhao, Fuya Zhao, Jing Feng, Shengda Li, Huinan Chen, Jiayu Sun, Bihai Zhu, Rui Geng, Yunwei Wei
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-22977-4

Analysis of the neurotoxic effects of neuropathic organophosphorus compounds in adult zebrafish
Cited by: 11
Author(s): Melissa Faria, Inmaculada Fuertes, Eva Prats, José Luı́s Abad, Francesc Padrós, Cristian Gómez‐Canela, Josefina Casas, Jorge Estévez, Eugenio Vilanova, Benjamı́n Piña, Demetrio Raldúa
Software Mentions: 5
Published: over 8 years ago