10.1371/journal.pntd.0006805

Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirus
Cited by: 24
Author(s): Anuradha Ray, Suheir Ereqat, Amer Al-Jawabreh, Ziad Abdeen, Omar Abu Shamma, Holly Hall, Mark J. Pallen, Abedelmajeed Nasereddin
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2105-14-S19-S6

The looks of an odour - Visualising neural odour response patterns in real time
Cited by: 1
Author(s): Martin Strauch, Clemens Müthing, Marc P. Broeg, Paul Szyszka, Daniel Münch, Thomas Laudes, Oliver Deußen, C. Giovanni Galizia, Dorit Merhof
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pgen.1004932

Regulation of Toll-like Receptor Signaling by the SF3a mRNA Splicing Complex
Cited by: 36
Author(s): Brian P. O’Connor, Thomas Danhorn, Lesly De Arras, Brenna R. Flatley, Randall E. Marcus, Eveline Farias-Hesson, Sonia M. Leach, Scott Alper
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0223982

Elucidating stygofaunal trophic web interactions via isotopic ecology
Cited by: 26
Author(s): Mattia Saccò, Alison J. Blyth, William F. Humphreys, Alison Kuhl, Debashish Mazumder, Colin Smith, Kliti Grice
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0098256

Uncertainty in Model Predictions of Vibrio vulnificus Response to Climate Variability and Change: A Chesapeake Bay Case Study
Cited by: 20
Author(s): Erin Urquhart, Benjamin F. Zaitchik, Darryn W. Waugh, Seth D. Guikema, Carlos E. Del Castillo
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0256573

Reduced genetic variability in a captive-bred population of the endangered Hume’s pheasant (Syrmaticus humiae, Hume 1881) revealed by microsatellite genotyping and D-loop sequencing
Cited by: 6
Author(s): Jitmat Thintip, Worapong Singchat, Syed Farhan Ahmad, Nattakan Ariyaraphong, Narongrit Muangmai, Wiyada Chamchumroon, Klinsak Pitiwong, ‪Warong Suksavate, Sutee Duangjai, Prateep Duengkae, Kornsorn Srikulnath
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0161059

A Look into the Cell: Honey Storage in Honey Bees, Apis mellifera
Cited by: 31
Author(s): Michael Eyer, Peter Neumann, Vincent Dietemann
Software Mentions: 2
Published: about 10 years ago

10.1080/20013078.2018.1470442

Metabolic alterations in urine extracellular vesicles are associated to prostate cancer pathogenesis and progression
Cited by: 93
Author(s): Marc Clos-García, Ana Loizaga-Iriarte, Patricia Zúñiga-García, Pilar Sánchez-Mosquera, Ana R. Cortazar, Esperanza González, Verónica Torrano, Cristina Alonso, Miriam Pérez-Cormenzana, Aitziber Ugalde-Olano, Isabel Lacasa-Viscasillas, Azucena Castro, Félix Royo, Miguel Unda, Arkaitz Carracedo, Juan Manuel Falcón‐Pérez
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0075962

Using Next-Generation Sequencing to Analyse the Diet of a Highly Endangered Land Snail (Powelliphanta augusta) Feeding on Endemic Earthworms
Cited by: 46
Author(s): Stéphane Boyer, Stephen D. Wratten, Andrew Holyoake, Jawad Abdelkrim, Robert Cruickshank
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0102162

Balancing Energy Budget in a Central-Place Forager: Which Habitat to Select in a Heterogeneous Environment?
Cited by: 41
Author(s): Martin Patenaude‐Monette, Marc Bélisle, Jean‐François Giroux
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0145676

Why Huddle? Ecological Drivers of Chick Aggregations in Gentoo Penguins, Pygoscelis papua, across Latitudes
Cited by: 10
Author(s): Caitlin Black, Ben Collen, Daniel T. Johnston, Tom Hart
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pgen.1006977

Gene-environment interaction study for BMI reveals interactions between genetic factors and physical activity, alcohol consumption and socioeconomic status
Cited by: 123
Author(s): Mathias Rask‐Andersen, Torgny Karlsson, Weronica E. Ek, Åsa Johansson
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0214436

Non-invasive assessment of NAFLD as systemic disease—A machine learning perspective
Cited by: 46
Author(s): Ali Canbay, Julia Kälsch, Ursula Neumann, Monika Rau, Simon Hohenester, Hideo A. Baba, Christian Rust, Andreas Geier, Dominik Heider, Jan-Peter Sowa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0214068

Impact of urbanization on predator and parasitoid insects at multiple spatial scales
Cited by: 40
Author(s): Daria Corcos, Pierfilippo Cerretti, Valerio Caruso, Maurizio Mei, Mirella Falco, Lorenzo Marini
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1008191

Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms
Cited by: 11
Author(s): Rabindra Nath Mukherjee, Burcu Beykal, Adam T. Szafran, Melis Onel, Fabio Stossi, Maureen G. Mancini, Dillon Lloyd, Fred A. Wright, Lan Zhou, Michael A. Mancini, Efstratios N. Pistikopoulos
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0257356

Gene signatures associated with barrier dysfunction and infection in oral lichen planus identified by analysis of transcriptomic data
Cited by: 5
Author(s): Phuc Thi-Duy Vo, Sun Shim Choi, Hae Ryoun Park, Ahreum Lee, Sung-Hee Jeong, Youngok Choi
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0173954

Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds
Cited by: 42
Author(s): Nedenia Bonvino Stafuzza, Adhemar Zerlotini, Francisco Pereira Lobo, M. E. B. Yamagishi, T.C.S. Chud, Alexandre Rodrigues Caetano, Danísio Prado Munari, Dorian J. Garrick, M. A. Machado, Marta Fonseca Martins, Maria Raquel Carvalho, John B. Cole, Marcos Vinícius Gualberto Barbosa da Silva
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0155555

The Role of Human Coronaviruses in Children Hospitalized for Acute Bronchiolitis, Acute Gastroenteritis, and Febrile Seizures: A 2-Year Prospective Study
Cited by: 38
Author(s): Monika Jevšnik, Andrej Steyer, Marko Pokorn, Tatjana Mrvič, Štefan Grosek, Franc Strle, Lara Lusa, Miroslav Petrovec
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1006134

Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions
Cited by: 58
Author(s): Logan Brooks, David Farrow, Sangwon Hyun, Ryan J. Tibshirani, Roni Rosenfeld
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-019-3001-4

Selection of microbial biomarkers with genetic algorithm and principal component analysis
Cited by: 10
Author(s): Ping Zhang, Nicholas P. West, Pin-Yen Chen, Mike W.C. Thang, Gareth Price, Allan W. Cripps, Amanda J. Cox
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0231595

Comparing and synthesizing quantitative distribution models and qualitative vulnerability assessments to project marine species distributions under climate change
Cited by: 10
Author(s): Andrew Allyn, Michael A. Alexander, Bradley Franklin, Félix Massiot‐Granier, Andrew J. Pershing, James D. Scott, Katherine E. Mills
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0245695

Winter roost selection of Lasiurine tree bats in a pyric landscape
Cited by: 10
Author(s): Marcelo H. Jorge, W. Mark Ford, Sara E. Sweeten, Samuel R. Freeze, Michael C. True, Michael J. Germain, Hila Taylor, Katherine M. Gorman, Elina P. Garrison, Michael J. Cherry
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0248985

Hypopigmented burn hypertrophic scar contains melanocytes that can be signaled to re-pigment by synthetic alpha-melanocyte stimulating hormone in vitro
Cited by: 10
Author(s): Bonnie C Carney, Taryn E Travis, Lauren T. Moffatt, Laura S. Johnson, Melissa M McLawhorn, Cynthia M. Simbulan-Rosenthal, Dean S. Rosenthal, Jeffrey W. Shupp
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0251259

Extracellular vesicle-enriched miRNA profiles across pregnancy in the MADRES cohort
Cited by: 9
Author(s): Helen Foley, Caitlin G. Howe, Sandrah P. Eckel, Thomas Chavez, Lili Gevorkian, Eileen Granada Reyes, Bethany Kapanke, Danilo Martínez, Shanyan Xue, Shakira F. Suglia, Theresa M. Bastain, Carmen J. Marsit, Carrie V. Breton
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0061203

Differential Expression Profiles in the Midgut of Triatoma infestans Infected with Trypanosoma cruzi
Cited by: 25
Author(s): Diego S. Buarque, Glória R.C. Braz, Rafael Miyazawa Martins, Anita Mitico Tanaka-Azevedo, Cícera M. Gomes, Felipe Henrique Monteiro Oliveira, Sérgio Schenkman, Aparecida S. Tanaka
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0223366

Time scale of resilience loss: Implications for managing critical transitions in water quality
Cited by: 6
Author(s): Ryan D. Batt, Tarsha Eason, Ahjond S. Garmestani
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0158528

Impaired Granuloma Formation in Sepsis: Impact of Monocytopenia
Cited by: 5
Author(s): Julie Alingrin, Benjamin Coiffard, Julien Textoris, P. Bélénotti, Aurélie Daumas, Marc Léone, Jean‐Louis Mège
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-10-455

Integrative approaches to the prediction of protein functions based on the feature selection
Cited by: 8
Author(s): Seokha Ko, Hyunju Lee
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pcbi.1004147

Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations
Cited by: 59
Author(s): Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pbio.1000456

Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials
Cited by: 68
Author(s): Majid Kazemian, Charles Blatti, Adam Richards, Michael McCutchan, Noriko Wakabayashi-Ito, Ann S. Hammonds, S Celniker, Sudhir Kumar, Scot A. Wolfe, Michael Brodsky, Saurabh Sinha
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0170655

SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.)
Cited by: 40
Author(s): Annarita Marrano, Giovanni Birolo, M.L. Prazzoli, Silvia Lorenzi, Giorgio Valle, S. Grando
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pbio.2000633

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine
Cited by: 103
Author(s): Nicole M. Vega, Jeff Gore
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0219838

Multi-pathogen serological survey of migratory caribou herds: A snapshot in time
Cited by: 17
Author(s): Anja M. Carlsson, Patricia S. Curry, Brett Elkin, Donald E. Russell, Alasdair M. Veitch, Marsha Branigan, Mitch Campbell, Bruno Croft, Christine Cuyler, Steeve D. Côté, Lise-Marie Leclerc, Morten Tryland, Ingebjørg Helena Nymo, Susan Kutz
Software Mentions: 2
Published: over 7 years ago

10.1098/rsob.190028

Population genomics reveals possible genetic evidence for parallel evolution of <i>Sebastiscus marmoratus</i> in the northwestern Pacific Ocean
Cited by: 8
Author(s): Shengyong Xu, Takashi Yanagimoto, Na Song, Shanshan Cai, Tianxiang Gao, Xiumei Zhang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0197847

The influence of spatial and temporal discontinuities of forest habitats on the current presence of flightless saproxylic beetles
Cited by: 6
Author(s): Estelle Cateau, Pierre‐Alexis Herrault, David Sheeren, Sylvie Ladet, Hervé Brustel
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0186518

Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data
Cited by: 9
Author(s): Stephanie A. Bien, Paul L. Auer, Tabitha A. Harrison, Conghui Qu, Charles M. Connolly, Peyton G. Greenside, Sai Chen, Sonja I. Berndt, Stéphane Bézieau, Hyun Min Kang, Jeroen R. Huyghe, Hermann Brenner, Graham Casey, Andrew T. Chan, John L. Hopper, Barbara L. Banbury, Jenny Chang–Claude, Stephen J. Chanock, Robert W. Haile, Michael Hoffmeister, Christian Fuchsberger, Mark A. Jenkins, Suzanne M. Leal, Mathieu Lemire, Polly A. Newcomb, Steven Gallinger, John D. Potter, Robert E. Schoen, Martha L. Slattery, Joshua D. Smith, Loı̈c Le Marchand, Emily White, Brent W. Zanke, Gonçalo R. Abecasis, Christopher S. Carlson, Ulrike Peters, Deborah A. Nickerson, Anshul Kundaje, Li Hsu, Ccfr
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0131686

Transcriptional Response in Mouse Thyroid Tissue after 211At Administration: Effects of Absorbed Dose, Initial Dose-Rate and Time after Administration
Cited by: 11
Author(s): Nils Rudqvist, Johan Spetz, Emil Schüler, Toshima Z. Parris, Britta Langen, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0223726

Take one step backward to move forward: Assessment of genetic diversity and population structure of captive Asian woolly-necked storks (Ciconia episcopus)
Cited by: 14
Author(s): Kornsuang Jangtarwan, Tassika Koomgun, Tulyawat Prasongmaneerut, Ratchaphol Thongchum, Worapong Singchat, Panupong Tawichasri, Toshiharu Fukayama, Siwapech Sillapaprayoon, Ekaphan Kraichak, Narongrit Muangmai, Sudarath Baicharoen, Chainarong Punkong, Surin Peyachoknagul, Prateep Duengkae, Kornsorn Srikulnath
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0130035

Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities
Cited by: 54
Author(s): Markus Majaneva, Kirsi Hyytiäinen, Sirkka-Liisa Varvio, Satoshi Nagai, Jaanika Blomster
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0194599

A decade of the World Register of Marine Species – General insights and experiences from the Data Management Team: Where are we, what have we learned and how can we continue?
Cited by: 21
Author(s): L. Vandepitte, B. Vanhoorne, Wim Decock, Sofie Vranken, Thomas Lanssens, Stefanie Dekeyzer, Kevin Verfaille, Tammy Horton, Andreas Kroh, F. Hernández, Jan Mees
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0209886

Trait expression and signatures of adaptation in response to nitrogen addition in the common wetland plant Juncus effusus
Cited by: 2
Author(s): Jennifer Born, Stefan G. Michalski
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0107341

Repeatability of Feather Mite Prevalence and Intensity in Passerine Birds
Cited by: 20
Author(s): Javier Díaz-Real, David Serrano, Javier Pérez‐Tris, Sofía Fernández‐González, Ana Bermejo, Juan Antonio Calleja, Javier de la Puente, Diana De Palacio, José Luis Martínez, Rubén Moreno-Opo, Carlos Ponce, Óscar Frías, José Luis Tella, Anders Pape Møller, Jordi Figuerola, Péter L. Pap, István Kovács, Csongor I. Vágási, Leandro Meléndez, Guillermo Blanco, Eduardo Aguilera, Juan Carlos Senar, Ismael Galván, Francisco Borrás Atiénzar, Emilio Barba, José Cantó Doménech, Verónica Cortés, Juan S. Monrós, Rubén Piculo, Matthias Vögeli, Antoni Borràs, Carlos Navarro, Alexandre Mestre, Roger Jovani
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0237779

Predictive analysis methods for human microbiome data with application to Parkinson’s disease
Cited by: 18
Author(s): Mei Dong, Longhai Li, Man Chen, Anthony Kusalik, Wei Xu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0242763

A multicenter, randomized, open-label, controlled trial to evaluate the efficacy and tolerability of hydroxychloroquine and a retrospective study in adult patients with mild to moderate coronavirus disease 2019 (COVID-19)
Cited by: 50
Author(s): Cheng-Pin Chen, Yi‐Chun Lin, Tsung-Chia Chen, Ting-Yu Tseng, Hon-Lai Wong, Chi‐Tai Kuo, Wu-Pu Lin, Sz-Rung Huang, Weiyao Wang, Jia-Hung Liao, Chia-Hung Liao, Yuan‐Pin Hung, Tse-Hung Lin, Tz-Yan Chang, Chin‐Fu Hsiao, Yi-Wen Huang, Wei‐Sheng Chung, Chien-Yu Cheng, Shu‐Hsing Cheng
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0219592

Elimination of protein aggregates prevents premature senescence in human trisomy 21 fibroblasts
Cited by: 15
Author(s): Nobutoshi Nawa, Katsuya Hirata, Keiji Kawatani, Toshihiko Nambara, Sayaka Omori, Kimihiko Banno, Chikara Kokubu, Junji Takeda, Ken Nishimura, Manami Ohtaka, Mahito Nakanishi, Daisuke Okuzaki, Hidetoshi Taniguchi, Hitomi Arahori, Kazuko Wada, Yasuji Kitabatake, Keiichi Ozono
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0118591

A Protocol to Assess Insect Resistance to Heat Waves, Applied to Bumblebees (Bombus Latreille, 1802)
Cited by: 52
Author(s): Baptiste Martinet, Thomas Lecocq, Jérémy Smet, Pierre Rasmont
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0188267

Antigenicity of the 2015–2016 seasonal H1N1 human influenza virus HA and NA proteins
Cited by: 44
Author(s): Amelia Clark, Marta L. DeDiego, Christopher Anderson, Jiong Wang, Hongmei Yang, Aitor Nogales, Luis Martinez‐Sobrido, Martin S. Zand, Mark Y. Sangster, David J. Topham
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0192731

Wildlife-vehicle collisions in Lanzarote Biosphere Reserve, Canary Islands
Cited by: 25
Author(s): Gustavo Tejera, Beneharo Rodríguez, Carlos Armas, Airam Rodríguez
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0248355

A high-content screen identifies the vulnerability of MYC-overexpressing cells to dimethylfasudil
Cited by: 3
Author(s): Jing Zhang, Shenqiu Zhang, Qiong Shi, T. C. Allen, Fengming You, Dianer Yang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0240647

Bioinformatic characterization of angiotensin-converting enzyme 2, the entry receptor for SARS-CoV-2
Cited by: 25
Author(s): Harlan Barker, Seppo Parkkila
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0212088

Microplastics in Mediterranean Sea: A protocol to robustly assess contamination characteristics
Cited by: 40
Author(s): Mikaël Kedzierski, Jonathan Villain, Mathilde Falcou-Préfol, Marie Emmanuelle Kerros, Maryvonne Henry, Maria Luiza Pedrotti, Stéphane Bruzaud
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0156201

Acclimatization of Photosynthetic Apparatus of Tor Grass (Brachypodium pinnatum) during Expansion
Cited by: 21
Author(s): Wojciech Bąba, Hazem M. Kalaji, Agnieszka Kompała‐Bąba, Vasilij Goltsev
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0036213

A Novel Antibody-Based Biomarker for Chronic Algal Toxin Exposure and Sub-Acute Neurotoxicity
Cited by: 35
Author(s): Kathi A. Lefebvre, Elizabeth R. Frame, Frances M. D. Gulland, John D. Hansen, Preston S. Kendrick, Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Emma Hiolski, Donald R. Smith, David J. Marcinek
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pbio.0060280

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
Cited by: 2,015
Author(s): Les Dethlefsen, Susan M. Huse, Mitchell L. Sogin, David A. Relman
Software Mentions: 2
Published: almost 18 years ago

10.1371/journal.pbio.1002200

The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii
Cited by: 22
Author(s): Daniel P. Beiting, Shinya Hidano, Julie E. Baggs, Jeanne M. Geskes, Qun Fang, E. John Wherry, Christopher A. Hunter, David S. Roos, Sara Cherry
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pbio.2005143

Glucotypes reveal new patterns of glucose dysregulation
Cited by: 151
Author(s): Heather Hall, Dalia Perelman, Alessandra Breschi, Patricia Limcaoco, Ryan Kellogg, Tracey McLaughlin, M Snyder
Software Mentions: 2
Published: over 8 years ago

10.3390/plants10040632

Distribution of Orchids with Different Rooting Systems in the Czech Republic
Cited by: 5
Author(s): Zuzana Štípková, Spyros Tsiftsis, Pavel Kindlmann
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0240906

Prevalence and factors associated with physical function limitation in older West African people living with HIV
Cited by: 6
Author(s): Charlotte Bernard, Hélène Font, Z. Diallo, Richard Ahonon, Judicaël Tine, Franklin N’guessan Abouo, Aristophane Tanon, Eugène Messou, Moussa Seydi, François Dabis, Nathalie de Rekeneire
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0220484

International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda
Cited by: 12
Author(s): Takiyah Ball, Daniel Farias Marinho do Monte, Awa Aı̈dara-Kane, Jorge Matheu, Hongyu Ru, Siddhartha Thakur, Francis Ejobi, Paula J. Fedorka-Cray
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0062719

The Mediterranean Benthic Herbivores Show Diverse Responses to Extreme Storm Disturbances
Cited by: 17
Author(s): Jordi F. Pagès, Alessandro Gera, Javier Romero, Simone Farina, Antoni García-Rubies, Bernat Hereu, Teresa Alcoverro
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0224249

Coming and going – Historical distributions of the European oyster Ostrea edulis Linnaeus, 1758 and the introduced slipper limpet Crepidula fornicata Linnaeus, 1758 in the North Sea
Cited by: 11
Author(s): Sarah Hayer, Andreas Bick, Angelika Brandt, Christine Ewers-Saucedo, Dieter Fiege, Susanne Füting, Ben Krause‐Kyora, Peter Michalik, Götz-Bodo Reinicke, Dirk Brandis
Software Mentions: 2
Published: about 7 years ago

10.3390/plants9101404

Ailanthus altissima Forests Determine a Shift in Herbaceous Layer Richness: A Paired Comparison with Hardwood Native Forests in Sub-Mediterranean Europe
Cited by: 9
Author(s): Silvia Montecchiari, Giulio Tesei, Marina Allegrezza
Software Mentions: 2
Published: about 6 years ago

10.3390/plants10010173

Enhanced Abiotic Stress Tolerance of Vicia faba L. Plants Heterologously Expressing the PR10a Gene from Potato
Cited by: 8
Author(s): Abeer F. Desouky, Ahmed H. Hanafy Ahmed, Hartmut Stützel, Hans‐Jörg Jacobsen, Yi-Chen Pao, Moemen S. Hanafy
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9121628

Genomic Regions Associated with the Control of Flowering Time in Durum Wheat
Cited by: 13
Author(s): Priyanka Gupta, Hafssa Kabbaj, Khaoula El Hassouni, Marco Maccaferri, Miguel Sánchez-García, Roberto Tuberosa, Filippo M. Bassi
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9091211

Phytoremediation of a Highly Arsenic Polluted Site, Using Pteris vittata L. and Arbuscular Mycorrhizal Fungi
Cited by: 26
Author(s): Simone Cantamessa, Nadia Massa, Elisa Gamalero, Graziella Berta
Software Mentions: 2
Published: about 6 years ago

10.1186/s13023-021-01741-4

RDmap: a map for exploring rare diseases
Cited by: 14
Author(s): Jian Yang, Chengyan Dong, Huilong Duan, Qiang Shu, Haomin Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0027493

Association between Circadian Clock Genes and Diapause Incidence in Drosophila triauraria
Cited by: 58
Author(s): Hisakata Yamada, Masatoshi Yamamoto
Software Mentions: 2
Published: almost 15 years ago

10.1186/s13007-021-00759-w

High-resolution spectral information enables phenotyping of leaf epicuticular wax in wheat
Cited by: 5
Author(s): Fátima Camarillo-Castillo, Trevis D. Huggins, Suchismita Mondal, Matthew Reynolds, Michael Tilley, Dirk B. Hays
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0249933

Rhythm and groove as cognitive mechanisms of dance intervention in Parkinson’s disease
Cited by: 7
Author(s): Anna Krotinger, Psyche Loui
Software Mentions: 2
Published: over 5 years ago

10.1186/s13023-021-01818-0

Assessing the integrity of auditory processing and sensory memory in adults with cystinosis (CTNS gene mutations)
Cited by: 4
Author(s): Ana A. Francisco, Alaina S. Berruti, Frederick J. Kaskel, John J. Foxe, Sophie Molholm
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0254686

Comparing non-breeding distribution and behavior of red-legged kittiwakes from two geographically distant colonies
Cited by: 0
Author(s): Brie A. Drummond, Rachael A. Orben, Aaron M. Christ, Abram B. Fleishman, Heather M. Renner, Nora A. Rojek, Marc D. Romano
Software Mentions: 2
Published: over 5 years ago

10.1167/iovs.62.6.20

The Predictive Role of Thyroid Hormone Levels for Early Diabetic Retinal Changes in Experimental Rat and Human Diabetes
Cited by: 2
Author(s): Anna Énzsöly, Rozina Ida Hajdú, Zsolt Turóczi, Irén Szalai, Erika Tátrai, Fanni Pálya, Zoltán Zsolt Nagy, Csaba Mátyás, Attila Oláh, Tamás Radovits, Klaudia Szabó, Bulcsú Dékány, Arnold Szabó, Ákos Kusnyerik, Petra Soltész, Dániel Sándor Veres, Anikó Somogyi, Gábor Márk Somfai, Ákos Lukáts
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0131821

Guanchochroma wildpretii gen. et spec. nov. (Ochrophyta) Provides New Insights into the Diversification and Evolution of the Algal Class Synchromophyceae
Cited by: 4
Author(s): Maria Schmidt, Susanne Horn, Katrin Ehlers, Christian Wilhelm, Reinhard Schnetter
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0124124

Impact of the CFTR-Potentiator Ivacaftor on Airway Microbiota in Cystic Fibrosis Patients Carrying A G551D Mutation
Cited by: 62
Author(s): Cédric Bernarde, Marlène Keravec, Jérôme Mounier, S. Gouriou, G. Rault, Claude Férec, Georges Barbier, Geneviève Héry-Arnaud
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0049145

High-Throughput MicroRNA (miRNAs) Arrays Unravel the Prognostic Role of MiR-211 in Pancreatic Cancer
Cited by: 64
Author(s): Elisa Giovannetti, Arjan van der Velde, Niccola Funel, Enrico Vasile, Vittorio Perrone, Leticia G. León, Nelide De Lio, Amir Avan, S. Caponi, Luca Emanuele Pollina, Valentina Gallá, Hiroko Sudo, Alfredo Falcone, Daniela Campani, Ugo Boggi, Godefridus J. Peters
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12966-020-00967-y

Association between time-weighted activity space-based exposures to fast food outlets and fast food consumption among young adults in urban Canada
Cited by: 22
Author(s): Bochu Liu, Michael J. Widener, Thomas Burgoine, David Hammond
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0092552

Defects in the C. elegans acyl-CoA Synthase, acs-3, and Nuclear Hormone Receptor, nhr-25, Cause Sensitivity to Distinct, but Overlapping Stresses
Cited by: 35
Author(s): Jordan D. Ward, Brendan Mullaney, Benjamin J. Schiller, Le He, Sarah Petnic, Carole Couillault, Nathalie Pujol, Teresita U. Bernal, Marc R. Van Gilst, Kaveh Ashrafi, Jonathan J. Ewbank, Keith R. Yamamoto
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0175684

Camera trap arrays improve detection probability of wildlife: Investigating study design considerations using an empirical dataset
Cited by: 41
Author(s): Kelly M. O’Connor, Lucas R. Nathan, Marjorie R. Liberati, Morgan W. Tingley, Jason C. Vokoun, Tracy A. G. Rittenhouse
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0059207

Ectomycorrhizal Colonization and Diversity in Relation to Tree Biomass and Nutrition in a Plantation of Transgenic Poplars with Modified Lignin Biosynthesis
Cited by: 38
Author(s): Lara Danielsen, Gertrud Lohaus, Anke Sirrenberg, Petr Karlovský, Catherine Bastien, Gilles Pilate, Andrea Polle
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0136385

Projecting the Hydrologic Impacts of Climate Change on Montane Wetlands
Cited by: 48
Author(s): Se-Yeun Lee, Maureen E. Ryan, Alan F. Hamlet, Wendy J. Palen, Joshua J. Lawler, Meghan Halabisky
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0253912

PKCδ deficiency inhibits fetal development and is associated with heart elastic fiber hyperplasia and lung inflammation in adult PKCδ knockout mice
Cited by: 6
Author(s): Yuko S. Niino, Ichiro Kawashima, Yoshinobu Iguchi, Hiroaki Kanda, Kiyoshi Ogura, Kaoru Mita-Yoshida, Tsutomu Ono, Maya Yamazaki, Kenji Sakimura, Satomi Yogosawa, Kiyotsugu Yoshida, Seiji Shioda, Tadao Gotoh
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0065516

Ecological Variation in Response to Mass-Flowering Oilseed Rape and Surrounding Landscape Composition by Members of a Cryptic Bumblebee Complex
Cited by: 18
Author(s): Dara A. Stanley, Mairi E. Knight, Jane C. Stout
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0142720

Evaluating DNA Extraction Methods for Community Profiling of Pig Hindgut Microbial Community
Cited by: 6
Author(s): Yang Lü, Philip Hugenholtz, Damien J. Batstone
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0130225

The Influence of Prior Learning Experience on Pollinator Choice: An Experiment Using Bumblebees on Two Wild Floral Types of Antirrhinum majus
Cited by: 8
Author(s): Coline C. Jaworski, Christophe Andalo, Christine Raynaud, Valérie Simon, Christophe Thébaud, Jérôme Chave
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0102634

Influenza-Like-Illness and Clinically Diagnosed Flu: Disease Burden, Costs and Quality of Life for Patients Seeking Ambulatory Care or No Professional Care at All
Cited by: 49
Author(s): Joke Bilcke, Samuel Coenen, Philippe Beutels
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0043915

Mechanisms of Dietary Response in Mice and Primates: A Role for EGR1 in Regulating the Reaction to Human-Specific Nutritional Content
Cited by: 3
Author(s): Kai Weng, Haiyang Hu, Guohua Xu, Philipp Khaitovich, Mehmet Somel
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0150852

Spontaneous 8bp Deletion in Nbeal2 Recapitulates the Gray Platelet Syndrome in Mice
Cited by: 12
Author(s): Kärt Tomberg, Rami Khoriaty, Randal J. Westrick, Heather Fairfield, Laura G. Reinholdt, Gary Brodsky, Pavel Davizon‐Castillo, David Ginsburg, Jorge Di Paola
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0229962

Chronic microfiber exposure in adult Japanese medaka (Oryzias latipes)
Cited by: 38
Author(s): Lingling Hu, Melissa Chernick, Anna M. Lewis, P. Lee Ferguson, David E. Hinton
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0007359

Multivariate Statistical Analyses Demonstrate Unique Host Immune Responses to Single and Dual Lentiviral Infection
Cited by: 14
Author(s): Sunando Roy, Jennie S. Lavine, Francesca Chiaromonte, Julie A. TerWee, Sue VandeWoude, Ottar N. Bjørnstad, Mary Poss
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0021417

Metabolomic Profiling Reveals a Role for Androgen in Activating Amino Acid Metabolism and Methylation in Prostate Cancer Cells
Cited by: 78
Author(s): Nagireddy Putluri, Ali Shojaie, Vihas T. Vasu, Srilatha Nalluri, Shaiju K. Vareed, Vasanta Putluri, Anuradha Vivekanandan-Giri, Jeman Byun, Subramaniam Pennathur, Theodore R. Sana, Steven M. Fischer, Ganesh S. Palapattu, Chad J. Creighton, George Michailidis, Arun Sreekumar
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0109405

Tree Spatial Structure, Host Composition and Resource Availability Influence Mirid Density or Black Pod Prevalence in Cacao Agroforests in Cameroon
Cited by: 31
Author(s): Cynthia Gidoin, Régis Babin, Leïla Bagny Beilhe, Christian Cilas, G. Martijn ten Hoopen, Marie Ange Ngo Bieng
Software Mentions: 2
Published: about 12 years ago

10.3390/cancers13153723

Site-Specific Variation in Radiomic Features of Head and Neck Squamous Cell Carcinoma and Its Impact on Machine Learning Models
Cited by: 5
Author(s): Xiaoyang Liu, Farhad Maleki, N. Moorthy Muthukrishnan, Katie Ovens, Shao Hui Huang, Almudena Pérez Lara, Griselda Romero-Sánchez, Sahir Bhatnagar, A. Chatterjee, Marc Pusztaszeri, Alan Spatz, Gerald Batist, Sam Payabvash, Stefan P. Haider, Amit Mahajan, Caroline Reinhold, Behzad Forghani, Eugene Yu, Reza Forghani
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11071031

GNAQ Q209R Mutations Are Highly Specific for Circumscribed Choroidal Hemangioma
Cited by: 13
Author(s): Claudia H D Le Guin, K. Metz, Stefan Kreis, Nikolaos E. Bechrakis, Norbert Bornfeld, Michael Zeschnigk, Dietmar Lohmann
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers5020491

Metabolomic Dynamic Analysis of Hypoxia in MDA-MB-231 and the Comparison with Inferred Metabolites from Transcriptomics Data
Cited by: 15
Author(s): I‐Lin Tsai, Tien-Chueh Kuo, Tsung Jung Ho, Yeu-Chern Harn, San-Yuan Wang, Wen‐Mei Fu, Ching‐Hua Kuo, Yufeng J. Tseng
Software Mentions: 2
Published: over 13 years ago

10.1111/cpr.13028

Immunosuppressive effect of mesenchymal stem cells on lung and gut CD8 ⁺ T cells in lipopolysaccharide‐induced acute lung injury in mice
Cited by: 24
Author(s): Yanping Xu, Jiaqi Zhu, Bing Feng, Feiyan Lin, Jiarong Zhou, Jingqi Liu, Xiaowei Shi, Xuan Li, Qiaoling Pan, Jiong Yu, Ying Zhang, Lanjuan Li, Hong Cao
Software Mentions: 2
Published: over 5 years ago

10.1016/j.celrep.2018.09.087

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth
Cited by: 89
Author(s): Kshitij Wagh, Edward F. Kreider, Yingying Li, Hannah J. Barbian, Gerald H. Learn, Elena E. Giorgi, Peter Hraber, Timothy Decker, Andrew G. Smith, Marcos Vinícius Pereira Gondim, Lindsey Gillis, Jamie M. Wandzilak, Gwo-Yu Chuang, Reda Rawi, Fangping Cai, Pierre Pellegrino, Ian Williams, Julie Overbaugh, Feng Gao, Peter D. Kwong, Barton F. Haynes, George M. Shaw, Persephone Borrow, Michael S. Seaman, Beatrice H. Hahn, Bette T. Korber
Software Mentions: 2
Published: about 8 years ago

10.1093/texcom/tgaa033

Associations between Amygdala-Prefrontal Functional Connectivity and Age Depend on Neighborhood Socioeconomic Status
Cited by: 15
Author(s): Bruce Ramphal, Mariah DeSerisy, David Pagliaccio, Elizabeth Raffanello, Virginia Rauh, Gregory Tau, Jonathan Posner, Rachel Marsh, Amy E. Margolis
Software Mentions: 2
Published: almost 7 years ago

10.1186/s41235-017-0052-9

Think3d!: Improving mathematics learning through embodied spatial training
Cited by: 31
Author(s): Heather Burte, Aaron L. Gardony, Allyson Hutton, Holly A. Taylor
Software Mentions: 2
Published: over 9 years ago

10.1038/s42003-021-01742-w

1 °C warming increases spatial competition frequency and complexity in Antarctic marine macrofauna
Cited by: 5
Author(s): David K. A. Barnes, Gail Ashton, Simon A. Morley, Lloyd S. Peck
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-1054-6

Biocrusts buffer against the accumulation of soil metallic nutrients induced by warming and rainfall reduction
Cited by: 10
Author(s): Eduardo Moreno-Jiménez, Raúl Ochoa‐Hueso, César Plaza, Sara Aceña-Heras, Maren Flagmeier, Fatima Z. Elouali, Victoria Ochoa, Beatriz Gozalo, Roberto Lázaro, Fernando T. Maestre
Software Mentions: 2
Published: over 6 years ago