pypi: stats | Projects | Ecosyste.ms: Papers

10.1002/advs.202000486

Machine Learning‐Assisted Evaluation of Circulating DNA Quantitative Analysis for Cancer Screening
Cited by: 17
Author(s): Rita Tanos, Guillaume Tosato, Amaëlle Otandault, Zahra Al Amir Dache, Laurence Lasorsa, Geoffroy Tousch, Safia El Messaoudi, Romain Meddeb, Mona Diab Assaf, Marc Ychou, Stanislas du Manoir, Denis Pezet, Johan Gagnière, Pierre Colombo, William Jacot, Eric Assénat, Marie Dupuy, Antoine Adenis, Thibault Mazard, Caroline Mollévi, José María Sayagués, Jacques Colinge, Alain R. Thierry
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/8834578

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury
Cited by: 3
Author(s): Siyang Wang, Jie Gao, Yiwei Song, Guangyan Cai, Xiangmei Chen
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.46922

Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation
Cited by: 99
Author(s): Thomas A Sasani, Brent S. Pedersen, Ziyue Gao, Lisa Baird, Molly Przeworski, Lynn B. Jorde, Aaron R. Quinlan
Software Mentions: 4
Published: almost 7 years ago

10.3390/biom11091303

Determination of Butyrate Synthesis Capacity in Gut Microbiota: Quantification of but Gene Abundance by qPCR in Fecal Samples
Cited by: 5
Author(s): Nikola Ďásková, Marie Heczková, István Módos, Petra Vídeňská, Petra Šplíchalová, Helena Pelantová, Marek Kuzma, Jan Gojda, Monika Cahová
Software Mentions: 4
Published: about 5 years ago

10.3390/insects11060350

Large- and Small-Scale Environmental Factors Drive Distributions of Ant Mound Size Across a Latitudinal Gradient
Cited by: 4
Author(s): Orsolya Juhász, Zoltán Bátori, Gema Trigos‐Peral, Gábor Lőrinczi, Gábor Módra, Imola Bóni, Péter János Kiss, Dianne Joy Aguilon, Anna Tenyér, István Maák
Software Mentions: 4
Published: over 6 years ago

10.1093/aobpla/plaa006

Plasticity to drought and ecotypic differentiation in populations of a crop wild relative
Cited by: 20
Author(s): Silvia Matesanz, Marina Ramos‐Muñoz, Belén Moncalvillo, María Luisa Rubio Teso, S L García de Dionisio, José Antonio Vinagre Romero, J. M. Iriondo
Software Mentions: 4
Published: over 6 years ago

10.1186/s13068-020-01776-y

Biomethanation processes: new insights on the effect of a high H2 partial pressure on microbial communities
Cited by: 38
Author(s): Lucia Braga Nan, Éric Trably, Gaëlle Santa-Catalina, Nicolas Bernet, Jean-Philippe Delgenès, Renaud Escudié
Software Mentions: 4
Published: about 6 years ago

10.3390/jof7090769

Defining Functions of Mannoproteins in Saccharomyces cerevisiae by High-Dimensional Morphological Phenotyping
Cited by: 2
Author(s): Farzan Ghanegolmohammadi, Hiroki Okada, Yaxuan Liu, Kaori Itto-Nakama, Shinsuke Ohnuki, A. S. Savchenko, Erfei Bi, Satoshi Yoshida, Yoshikazu Ohya
Software Mentions: 4
Published: about 5 years ago

10.1186/s13068-016-0608-9

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Cited by: 91
Author(s): Jaana Kuuskeri, Mari Häkkinen, Pia Laine, Olli‐Pekka Smolander, Fitsum Tamene, Sini Miettinen, Paula Nousiainen, Marianna Kemell, Petri Auvinen, Taina Lundell
Software Mentions: 4
Published: about 10 years ago

10.1038/bcj.2016.77

lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome
Cited by: 40
Author(s): Domenica Ronchetti, Martina Manzoni, Luca Agnelli, Cristina Vinci, Sonia Fabris, Giovanna Cutrona, Serena Matis, Monica Colombo, S. Galletti, Elisa Taìana, Anna Grazia Recchia, Sabrina Bossio, Massimo Gentile, Caterina Musolino, Francesco Di Raimondo, Andrea Grilli, Silvio Bicciato, Agostino Cortelezzi, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 4
Published: about 10 years ago

10.7554/eLife.60108

Novel cell types and developmental lineages revealed by single-cell RNA-seq analysis of the mouse crista ampullaris
Cited by: 21
Author(s): Brent A. Wilkerson, Heather L Zebroski, Connor Finkbeiner, Alex Chitsazan, Kathy Beach, Nilasha Sen, Renee C Zhang, Olivia Bermingham‐McDonogh
Software Mentions: 4
Published: over 5 years ago

10.3390/jof1020185

Ectomycorrhizal Fungal Communities and Enzymatic Activities Vary across an Ecotone between a Forest and Field
Cited by: 15
Author(s): Megan A. Rúa, B. Moore, Nicole Marie Hergott, Lily Van, Colin R. Jackson, Jason D. Hoeksema
Software Mentions: 4
Published: about 11 years ago

10.3390/brainsci10060406

Evaluating the Impact of Age, Acoustic Exposure, and Electrical Stimulation on Binaural Sensitivity in Adult Bilateral Cochlear Implant Patients
Cited by: 12
Author(s): Tanvi Thakkar, Sean R. Anderson, Alan Kan, Ruth Y. Litovsky
Software Mentions: 4
Published: about 6 years ago

10.1186/s40345-020-00211-3

Melanopsin-mediated pupillary responses in bipolar disorder—a cross-sectional pupillometric investigation
Cited by: 4
Author(s): Helle Østergaard Madsen, Shakoor Ba‐Ali, Steffen Heegaard, Ida Hageman, Ulla Knorr, Henrik Lund‐Andersen, Klaus Martiny, Lars Vedel Kessing
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.25540.1

Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification
Cited by: 2
Author(s): Linto Antony, Gavin Fenske, Radhey S. Kaushik, T. G. Nagaraja, M. G. Thomas, Joy Scaria
Software Mentions: 4
Published: about 6 years ago

10.3390/insects11080532

Plant-Derived Insecticides Under Meta-Analyses: Status, Biases, and Knowledge Gaps
Cited by: 20
Author(s): Leonardo Morais Turchen, Lírio Cosme, Raul Narciso C. Guedes
Software Mentions: 4
Published: about 6 years ago

10.1007/s00262-020-02778-3

IL-10, IL-13, Eotaxin and IL-10/IL-6 ratio distinguish breast implant-associated anaplastic large-cell lymphoma from all types of benign late seromas
Cited by: 12
Author(s): Arianna Di Napoli, Daniele Greco, Giorgia Scafetta, Francesca Ascenzi, Alessandro Gulino, Luigi Aurisicchio, Fabio Santanelli di Pompeo, Adriana Bonifacino, Enrico Giarnieri, John Morgan, Rita Mancini, Marshall E. Kadin
Software Mentions: 4
Published: almost 6 years ago

10.1093/aobpla/ply023

Within- and trans-generational plasticity: seed germination responses to light quantity and quality
Cited by: 14
Author(s): Katherine Vayda, Kathleen Donohue, Gabriela Alejandra Auge
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms18050922

Transcriptomic Analysis of Calcium Remodeling in Colorectal Cancer
Cited by: 37
Author(s): Enrique Pérez-Riesgo, Lucía Gutiérrez, Daniel Ubierna, Alberto Acedo, Mary Pat Moyer, Lucı́a Núñez, Carlos Alonso
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-90297-1

Subsoil-potassium depletion accounts for the nutrient budget in high-potassium agricultural soils
Cited by: 6
Author(s): Adrián A. Correndo, Gerardo Rubio, Fernando O. García, Ignacio A. Ciampitti
Software Mentions: 4
Published: over 5 years ago

10.3390/ma14030487

Surface-Related Kinetic Models for Anaerobic Digestion of Microcrystalline Cellulose: The Role of Particle Size
Cited by: 1
Author(s): Michał Piątek, A. Lisowski, Magdalena Dąbrowska
Software Mentions: 4
Published: over 5 years ago

10.1155/2017/5719461

Seasonal Variation in Vitamin D in Association with Age, Inflammatory Cytokines, Anthropometric Parameters, and Lifestyle Factors in Older Adults
Cited by: 39
Author(s): Leticia Elizondo‐Montemayor, Elena C. Castillo, Carlos E. Rodríguez López, José R Villarreal-Calderón, Merit Gómez-Carmona, Sofia Tenorio-Martínez, Bianca Nieblas, Gerardo García‐Rivas
Software Mentions: 4
Published: over 9 years ago

10.1007/s00204-016-1781-0

High-content imaging-based BAC-GFP toxicity pathway reporters to assess chemical adversity liabilities
Cited by: 50
Author(s): Steven Wink, Steven Hiemstra, Bram Herpers, Bob van de Water
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-021-89002-z

Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
Cited by: 24
Author(s): William Johnston, Bob T. Rosier, Alejandro Artacho, Michael Paterson, Krystyna Piela, Christopher Delaney, Jason L. Brown, Gordon Ramage, Álex Mira, Shauna Culshaw
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.13200

Evolution of honey resistance in experimental populations of bacteria depends on the type of honey and has no major side effects for antibiotic susceptibility
Cited by: 5
Author(s): Anna M. Bischofberger, Katia R. Pfrunder‐Cardozo, Michael Baumgärtner, Alex R. Hall
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.13234

Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its host
Cited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: over 5 years ago

10.1016/j.mex.2019.02.005

A new method for selecting sites for soil sampling, coupling global weighted principal component analysis and a cost-constrained conditioned Latin hypercube algorithm
Cited by: 4
Author(s): Kwabena Abrefa Nketia, Stephen Boahen Asabere, Stefan Erasmi, Daniela Sauer
Software Mentions: 4
Published: over 7 years ago

10.1111/1751-7915.12747

Electro-fermentation triggering population selection in mixed-culture glycerol fermentation
Cited by: 35
Author(s): Roman Moscoviz, Eric Trably, Nicolas Bernet
Software Mentions: 4
Published: about 9 years ago

10.1007/s00248-021-01700-3

Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversity
Cited by: 9
Author(s): Florian Caillon, Katharina Besemer, Peter Peduzzi, Jakob Schelker
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01048-3

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Cited by: 28
Author(s): Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Masami Matsuda, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama, Atsushi Yamazoe, Yuichi Uchino, Keishi Kameyama, Shingo Arioka, Jiro Kataoka, Takayoshi Hisada, Kazuyuki Fujii, Shunsuke Takahashi, Miho Kuroiwa, Masatomo Rokushima, Mitsue Nishiyama, Yoshiki Tanaka, Takuya Fuchikami, Hitomi Aoki, Satoshi Kira, Ryo Koyanagi, Takeshi Naito, Morie Nishiwaki, Hirotaka Kumagai, Mikiko Konda, Keiji Kasahara, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi, Jun Terauchi
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0778-3

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
Cited by: 66
Author(s): Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xuelong Zhou, Xuanyu Tao, Daliang Ning, Mengting Yuan, Yujia Qin, Zhou Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 4
Published: over 6 years ago

10.1111/eva.12861

Novel signals of adaptive genetic variation in northwestern Atlantic cod revealed by whole‐genome sequencing
Cited by: 30
Author(s): Gemma V. Clucas, Runyang Nicolas Lou, Nina Overgaard Therkildsen, Adrienne I. Kovach
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms9020221

The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9040816

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
Cited by: 8
Author(s): Matthew G. Links, Tim J. Dumonceaux, Erin McCarthy, Sean M. Hemmingsen, Edward Topp, Jennifer Town
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-2798-1

WASABI: a dynamic iterative framework for gene regulatory network inference
Cited by: 32
Author(s): Arnaud Bonnaffoux, Ulysse Herbach, Richard Angélique, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon
Software Mentions: 4
Published: over 7 years ago

10.1155/2016/3159617

The Difference between the Two Representative Kampo Formulas for Treating Dysmenorrhea: An Observational Study
Cited by: 15
Author(s): Tetsuhiro Yoshino, Kotoe Katayama, Yuko Horiba, Kaori Munakata, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Hideki Mima, Kenji Watanabe, Masaru Mimura
Software Mentions: 4
Published: over 10 years ago

10.3390/microorganisms8070987

Analysis of Tick Surface Decontamination Methods
Cited by: 13
Author(s): Angeline Hoffmann, Volker Fingerle, Matthias Noll
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-87137-7

Distinct SARS-CoV-2 antibody reactivity patterns in coronavirus convalescent plasma revealed by a coronavirus antigen microarray
Cited by: 10
Author(s): Rafael de Assis, Aarti Jain, Rie Nakajima, Algis Jasinskas, Saahir Khan, Huw Davies, Laurence Corash, Larry J. Dumont, Kathleen Kelly, Graham Simmons, Mars Stone, Clara Di Germanio, Michael P. Busch, Philip L. Felgner
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020357

Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition
Cited by: 18
Author(s): Akane Chiba, Yoshitaka Uchida, Susanne Kublik, Gisle Vestergaard, Franz Buegger, Michael Schloter, Stefanie Schulz
Software Mentions: 4
Published: over 5 years ago

10.1039/c9sc04090k

Is there a gender gap in chemical sciences scholarly communication?
Cited by: 34
Author(s): Aileen Day, Peter Corbett, J. Boyle
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-84532-y

18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 5 years ago

10.1186/s13229-019-0306-0

Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons
Cited by: 13
Author(s): Emily M.A. Lewis, Kesavan Meganathan, Dustin Baldridge, Paul Gontarz, Bo Zhang, Azad Bonni, John N. Constantino, Kristen L. Kroll
Software Mentions: 4
Published: almost 7 years ago

10.1093/molbev/msaa172

Gene Loss Predictably Drives Evolutionary Adaptation
Cited by: 49
Author(s): Jana Helsen, Karin Voordeckers, Laura Vanderwaeren, Toon Santermans, Maria Tsontaki, Kevin J. Verstrepen, Rob Jelier
Software Mentions: 4
Published: about 6 years ago

10.1093/molbev/msw004

Environmental Correlation Analysis for Genes Associated with Protection against Malaria
Cited by: 20
Author(s): Margaret J. Mackinnon, Carolyne Ndila, Sophie Uyoga, Alex Macharia, Robert W. Snow, Gavin Band, Anna Rautanen, Kirk A. Rockett, Dominic P. Kwiatkowski, Thomas N. Williams
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-83901-x

Continuous glucose monitoring during pregnancy in healthy mice
Cited by: 4
Author(s): Caroline Wuyts, Caroline Simoens, Shirly Pinto, Koenraad Philippaert, Rudi Vennekens
Software Mentions: 4
Published: over 5 years ago

10.1111/mec.15635

On the way to specificity ‐ Microbiome reflects sponge genetic cluster primarily in highly structured populations
Cited by: 17
Author(s): Cristina Díez‐Vives, Sergi Taboada, Carlos Leiva, Kathrin Busch, Ute Hentschel, Ana Riesgo
Software Mentions: 4
Published: almost 6 years ago

10.3390/molecules24213942

A Chemometric Analysis of Deep-Sea Natural Products
Cited by: 16
Author(s): Lisa I. Pilkington
Software Mentions: 4
Published: almost 7 years ago

10.1186/s10020-021-00311-5

Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism
Cited by: 27
Author(s): Eder Orlando Méndez-Salazar, Janitzia Vázquez‐Mellado, Carlos S. Casimiro-Soriguer, Joaquín Dopazo, Cankut Çubuk, Yessica Zamudio-Cuevas, Adriana Francisco-Balderas, Karina Martínez-Flores, Javier Fernández‐Torres, Carlos Lozada, Carlos Pineda, Austreberto Sánchez-González, Luis H. Silveira, Ana I. Burguete-García, Citlalli Orbe-Orihuela, Alfredo Lagunas‐Martínez, Alonso Vazquez-Gomez, Alberto López‐Reyes, Berenice Palacios‐González, Gabriela Angélica Martínez‐Nava
Software Mentions: 4
Published: over 5 years ago

10.1186/s13024-021-00450-7

Genome-wide histone acetylation analysis reveals altered transcriptional regulation in the Parkinson’s disease brain
Cited by: 37
Author(s): Lilah Toker, Gia Tuong Thi Tran, Janani Sundaresan, Ole‐Bjørn Tysnes, Guido Alves, Kristoffer Haugarvoll, Gonzalo S. Nido, Christian Dölle, Charalampos Tzoulis
Software Mentions: 4
Published: over 5 years ago

10.1093/eurheartj/ehz100

Associations between vascular risk factors and brain MRI indices in UK Biobank
Cited by: 184
Author(s): Simon R. Cox, Donald M. Lyall, Stuart J. Ritchie, Mark E. Bastin, Mathew A. Harris, Colin R Buchanan, Chloë Fawns-Ritchie, Miruna C. Barbu, Laura de Nooij, Lianne M. Reus, Clara Alloza, Xueyi Shen, Emma Neilson, Helen L. Alderson, Stuart Hunter, David C. Liewald, Heather C. Whalley, Andrew M. McIntosh, Stephen M. Lawrie, Jill P. Pell, Elliot M. Tucker‐Drob, Joanna M. Wardlaw, Catharine R. Gale, Ian J. Deary
Software Mentions: 4
Published: over 7 years ago

10.1016/j.omto.2020.04.001

A Cross-Reactive Small Protein Binding Domain Provides a Model to Study Off-Tumor CAR-T Cell Toxicity
Cited by: 6
Author(s): Joanne A. Hammill, Jacek M. Kwiecień, Anna Dvorkin‐Gheva, Vivian Wing Chong Lau, Christopher L. Baker, Ying Wu, Ksenia Bezverbnaya, Craig Aarts, Christopher W. Heslen, Galina Denisova, Heather Derocher, Katy Milne, Brad H. Nelson, Jonathan L. Bramson
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-12-390

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
Cited by: 28
Author(s): Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R. Hvidsten
Software Mentions: 4
Published: almost 15 years ago

10.1038/s41598-021-82866-1

The protective role of daidzein in intestinal health of turbot (Scophthalmus maximus L.) fed soybean meal-based diets
Cited by: 14
Author(s): Guijuan Yu, Yang Liu, Weihao Ou, Jihong Dai, Qinghui Ai, Wenbing Zhang, Kangsen Mai, Yan-Jiao Zhang
Software Mentions: 4
Published: over 5 years ago

10.1016/j.vaccine.2016.08.015

Distribution of Bexsero® Antigen Sequence Types (BASTs) in invasive meningococcal disease isolates: Implications for immunisation
Cited by: 62
Author(s): Carina Brehony, Charlene Rodrigues, Raymond Borrow, Andrew Smith, Robert Cunney, E. Richard Moxon, Martin C. J. Maiden
Software Mentions: 4
Published: about 10 years ago

10.1186/s12859-017-1586-z

MOST: most-similar ligand based approach to target prediction
Cited by: 25
Author(s): Tao Huang, Hong Mi, Chengyuan Lin, Ling Zhao, Linda L. D. Zhong, Fengbin Liu, Ge Zhang, Aiping Lu, Zhaoxiang Bian
Software Mentions: 4
Published: over 9 years ago

10.3390/vaccines7040215

Mapping Host-Related Correlates of Influenza Vaccine-Induced Immune Response: An Umbrella Review of the Available Systematic Reviews and Meta-Analyses
Cited by: 13
Author(s): Alexander Domnich, Ilaria Manini, Giovanna Elisa Calabrò, Chiara de Waure, Emanuele Montomoli
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-021-82196-2

Benchmarking of numerical integration methods for ODE models of biological systems
Cited by: 22
Author(s): Philipp Städter, Yannik Schälte, Leonard Schmiester, Jan Hasenauer, Paul Stapor
Software Mentions: 4
Published: over 5 years ago

10.3390/vaccines9070731

Sero-Monitoring of Horses Demonstrates the Equivac® HeV Hendra Virus Vaccine to Be Highly Effective in Inducing Neutralising Antibody Titres
Cited by: 8
Author(s): Kim Halpin, Kerryne Graham, Peter A. Durr
Software Mentions: 4
Published: about 5 years ago

10.1186/s12985-019-1211-z

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
Cited by: 9
Author(s): Heng Li, Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng, Zening Yang, Xing Huang, Manman Chu, Fengmei Yang, Zhanlong He, Nan Li, Jun Yang, Qiongwen Wu, Hongzhe Shi, Longding Liu
Software Mentions: 4
Published: about 7 years ago

10.3390/v10120715

Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem
Cited by: 23
Author(s): Ruth‐Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica L. Ray
Software Mentions: 4
Published: almost 8 years ago

10.3390/v11111041

Viruses in the Invasive Hornet Vespa velutina
Cited by: 36
Author(s): Anne Dalmon, Philippe Gayral, Damien Decante, Christophe Klopp, Diane Bigot, Maxime Thomasson, Elisabeth A. Herniou, Cédric Alaux, Yves Le Conte
Software Mentions: 4
Published: almost 7 years ago

10.3390/v12090922

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments
Cited by: 14
Author(s): Mara Elena Heinrichs, Dennis Alexander Tebbe, Bernd Wemheuer, Jutta Niggemann, Bert Engelen
Software Mentions: 4
Published: about 6 years ago

10.1155/2017/7210463

Comparison of Attenuated Total Reflectance Mid-Infrared, Near Infrared, and <sup>1</sup>H-Nuclear Magnetic Resonance Spectroscopies for the Determination of Coffee’s Geographical Origin
Cited by: 27
Author(s): Jéssica Medina, Diana Caro Rodríguez, Victoria A. Arana, Andrés Bernal, Pierre Esseiva, Julien Wist
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12859-021-04235-z

Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics
Cited by: 11
Author(s): Jia You Lin, Bao Rong Juo, Yu Hsuan Yeh, Shu Hsuan Fu, Yi Ting Chen, Chien Lun Chen, Kun Wu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-77263-z

Musical coordination in a large group without plans nor leaders
Cited by: 9
Author(s): Louise Goupil, Pierre Saint‐Germier, Gaëlle Rouvier, Diemo Schwarz, Clément Canonne
Software Mentions: 4
Published: almost 6 years ago

10.12688/wellcomeopenres.16584.2

A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS
Cited by: 31
Author(s): Leila Reyes, Manuel A. Sanchez-Garcia, Tyler Morrison, Andy J. M. Howden, Emily R. Watts, Simone Arienti, Pranvera Sadiku, Patricia Coelho, Ananda S. Mirchandani, Ailiang Zhang, David Hope, Sarah Clark, Jo Singleton, Shonna Johnston, Robert Grecian, Azin Poon, Sarah McNamara, Ian Harper, Max Head Fourman, Alejandro Brenes, Shalini Pathak, Adam Lloyd, Giovanny Rodriguez Blanco, Alex von Kriegsheim, Bart Ghesquière, Wesley Vermaelen, Camila Takeno Cologna, Kevin Dhaliwal, Nik Hirani, David H. Dockrell, Moira K. B. Whyte, David Griffith, Doreen A. Cantrell, Sarah R. Walmsley
Software Mentions: 4
Published: over 5 years ago

10.1186/s12957-021-02244-z

Identification of a ferroptosis-related gene signature predictive model in colon cancer
Cited by: 17
Author(s): Ye Wang, Heng-bo Xia, Zhang-ming Chen, Lei Meng, Aiming Xu
Software Mentions: 4
Published: over 5 years ago

10.3897/zookeys.1041.63884

Ichthyofauna in the last free-flowing river of the Lower Iguaçu basin: the importance of tributaries for conservation of endemic species
Cited by: 4
Author(s): Suelen Fernanda Ranucci Pini, Maristela Cavicchioli Makrakis, Mayara Pereira Neves, Sérgio Makrakis, Oscar Akio Shibatta, Elaine Antoniassi Luiz Kashiwaqui
Software Mentions: 4
Published: over 5 years ago

10.1186/s40851-018-0093-z

Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation
Cited by: 35
Author(s): Maja Mielke, Jan Wölfer, Patrick Arnold, Anneke H. van Heteren, Eli Amson, John A. Nyakatura
Software Mentions: 4
Published: over 8 years ago

10.1111/acel.13073

Global metabolic profiling to model biological processes of aging in twins
Cited by: 29
Author(s): Bryan Bunning, Kévin Contrepois, Brittany Lee‐McMullen, Gopal Krishna Dhondalay, Wenming Zhang, Dana Tupa, Olivia Raeber, Manisha Desai, Kari Nadeau, M Snyder
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-76025-1

Prediction of survival and recurrence in patients with pancreatic cancer by integrating multi-omics data
Cited by: 33
Author(s): Bin Baek, Hyunju Lee
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13071-020-04267-z

Contrasted transmission efficiency of Zika virus strains by mosquito species Aedes aegypti, Aedes albopictus and Culex quinquefasciatus from Reunion Island
Cited by: 11
Author(s): Yann Gomard, Cyrille Lebon, Patrick Mavingui, Célestine M. Atyame
Software Mentions: 4
Published: about 6 years ago

10.1016/j.envsoft.2018.02.011

Modelling background air pollution exposure in urban environments: Implications for epidemiological research
Cited by: 27
Author(s): Álvaro Gómez-Losada, José C.M. Pires, Rafael Pino‐Mejías
Software Mentions: 4
Published: about 8 years ago

10.1186/s13071-018-3139-3

Come rain or come shine: environmental effects on the infective stages of Sparicotyle chrysophrii, a key pathogen in Mediterranean aquaculture
Cited by: 16
Author(s): Mar Villar-Torres, Francisco E. Montero, Juan Antonio Raga, Aigües Repullés-Albelda
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-020-73948-7

Physical properties of epilithic river biofilm as a new lead to perform pollution bioassessments in overseas territories
Cited by: 3
Author(s): Dominique Monti, Cédric Hubas, Xavier Lourenço, Farid Begarin, Alexandre Haouisée, Laurence Romana, Estelle Lefrançois, Alexandra Jestin, Hélène Budzinski, Nathalie Tapie, Théo Risser, Jean-Louis Mansot, Philippe Keith, Olivier Gros, Pascal J. Lopez, Béatrice Lauga
Software Mentions: 4
Published: almost 6 years ago

10.1111/1462-2920.14608

Closely related viruses of the marine picoeukaryotic alga <i>Ostreococcus lucimarinus</i> exhibit different ecological strategies
Cited by: 15
Author(s): Amy Zimmerman, Charles Bachy, Xiufeng Ma, Simon Roux, Ho Bin Jang, Matthew B. Sullivan, Jacob R. Waldbauer, Alexandra Z. Worden
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms20194665

Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee
Cited by: 15
Author(s): Rayan Awada, Claudine Campa, Estelle Gibault, Eveline Déchamp, Frédéric Georget, Maud Lepelley, Cécile Abdallah, Alexender Erban, Federico Martinez‐Seidel, Joachim Kopka, Laurent Legendre, Sophie Léran, Geneviève Conéjéro, Jean‐Luc Verdeil, Dominique Crouzillat, D. Breton, Benoît Bertrand, Hervé Etienne
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-70582-1

Morphological and genome-wide evidence for natural hybridisation within the genus Stipa (Poaceae)
Cited by: 17
Author(s): Evgenii Baiakhmetov, Arkadiusz Nowak, Polina D. Gudkova, Marcin Nobis
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-69856-5

Intracellular and tissue specific expression of FTO protein in pig: changes with age, energy intake and metabolic status
Cited by: 6
Author(s): Karolina Ferenc, Tomaš Pilžys, Damian Garbicz, Michał Marcinkowski, Oleksandr Skorobogatov, Małgorzata Dylewska, Zdzisław Gajewski, Elżbieta Grzesiuk, R. Zabielski
Software Mentions: 4
Published: about 6 years ago

10.1093/iob/obaa046

Extreme Duty Cycles in the Acoustic Signals of Tiger Moths: Sexual and Natural Selection Operating in Parallel
Cited by: 3
Author(s): Yohami Fernández, Nicolas J. Dowdy, William E. Conner
Software Mentions: 4
Published: over 6 years ago

10.2478/intox-2014-0010

Systems toxicology approaches enable mechanistic comparison of spontaneous and cigarette smoke-related lung tumor development in the A/J mouse model
Cited by: 14
Author(s): Karsta Luettich, Yu‐Tao Xiang, Anita Iskandar, Alain Sewer, Florian Martin, Marja Talikka, Patrick Vanscheeuwijck, An Berges, Emilija Veljkovic, Ignacio González-Suárez, Walter K. Schlage, Walter K. Schlage, Julia Hoeng, Manuel C. Peitsch
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pcbi.1008347

Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 5 years ago

10.1289/EHP172

A Systematic Comparison of Linear Regression–Based Statistical Methods to Assess Exposome-Health Associations
Cited by: 143
Author(s): Lydiane Agier, Lützen Portengen, Marc Chadeau‐Hyam, Xavier Basagaña, Lise Giorgis-Allemand, Valérie Siroux, Oliver Robinson, Jelle Vlaanderen, Juan R. González, Mark Nieuwenhuijsen, Paolo Víneis, Martine Vrijheid, Rémy Slama, Roel Vermeulen
Software Mentions: 4
Published: almost 10 years ago

10.1371/currents.outbreaks.90e80717c4e67e1a830f17feeaaf85de

Integrating Environmental Monitoring and Mosquito Surveillance to Predict Vector-borne Disease: Prospective Forecasts of a West Nile Virus Outbreak
Cited by: 22
Author(s): Justin K. Davis, Geoffrey P. Vincent, Michael B. Hildreth, Lon Kightlinger, Christopher Carlson, Michael C. Wimberly
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pgen.1009364

A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots
Cited by: 14
Author(s): Braedan M. McCluskey, Susumu Uji, Joseph L. Mancusi, John H. Postlethwait, David M. Parichy
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1005474

Genome-Wide Analysis of PAPS1-Dependent Polyadenylation Identifies Novel Roles for Functionally Specialized Poly(A) Polymerases in Arabidopsis thaliana
Cited by: 16
Author(s): Christian Kappel, Gerda Trost, Hjördis Czesnick, Anna Ramming, Benjamin Kolbe, Son Lang, Cláudia Bispo, Jörg Becker, Cornelia H. de Moor, Michael Lenhard
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pgen.1003748

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression
Cited by: 91
Author(s): Mathilde Paris, Tommy Kaplan, Xiao Yong Li, Jacqueline E. Villalta, Susan E. Lott, Michael B. Eisen
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pgen.1002658

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome
Cited by: 113
Author(s): Heike Wollmann, Sarah Holec, Keith Alden, Neil D. Clarke, Pierre-Étienne Jacques, Frédéric Berger
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: over 5 years ago

10.3390/e22020153

Selection Consistency of Lasso-Based Procedures for Misspecified High-Dimensional Binary Model and Random Regressors
Cited by: 2
Author(s): Mariusz Kubkowski, Jan Mielniczuk
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008908

An expanded cell wall damage signaling network is comprised of the transcription factors Rlm1 and Sko1 in Candida albicans
Cited by: 19
Author(s): Marienela Y. Heredia, Mélanie Ikeh, Deepika Gunasekaran, Karen A. Conrad, Sviatlana Filimonava, Dawn H. Marotta, Clarissa J. Nobile, Jason M. Rauceo
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1007133

Genome wide comparison of Ethiopian Leishmania donovani strains reveals differences potentially related to parasite survival
Cited by: 38
Author(s): Arie Zackay, James A. Cotton, Mandy Sanders, Asrat Hailu, Abedelmajeed Nasereddin, Alon Warburg, Charles L. Jaffe
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pntd.0007766

Enduring extreme climate: Effects of severe drought on Triatoma brasiliensis populations in wild and man-made habitats of the Caatinga
Cited by: 6
Author(s): Antonia C. Ribeiro, Otília Sarquis, Marli Maria Lima, Fernando Abad‐Franch
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pntd.0008764

Adults from Kisumu, Kenya have robust γδ T cell responses to Schistosoma mansoni, which are modulated by tuberculosis
Cited by: 0
Author(s): Taryn A. McLaughlin, Jeremiah Khayumbi, Joshua Ongalo, Daniel O. Matete, Joan Tonui, Benson Muchiri, Loren E. Sasser, Angela Campbell, Salim Allana, Samuel Gurrion Ouma, Felix Odhiambo Hayara, Neel R. Gandhi, Cheryl L. Day
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-65952-8

Effects of nitrogen deposition and litter layer management on soil CO2, N2O, and CH4 emissions in a subtropical pine forestland
Cited by: 11
Author(s): Jianling Fan, Xueyong Pang, B.G. McConkey, Noura Ziadi
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0008407

Linking longitudinal and cross-sectional biomarker data to understand host-pathogen dynamics: Leptospira in California sea lions (Zalophus californianus) as a case study
Cited by: 9
Author(s): Katherine C. Prager, Michael Buhnerkempe, Denise J. Greig, Anthony J. Orr, Eric D. Jensen, Forrest M. Gomez, Renee L. Galloway, Qingzhong Wu, Frances M. D. Gulland, James O. Lloyd‐Smith
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-63764-4

SEER and Gene Expression Data Analysis Deciphers Racial Disparity Patterns in Prostate Cancer Mortality and the Public Health Implication
Cited by: 7
Author(s): Wensheng Zhang, Yan Dong, Oliver Sartor, Erik K. Flemington, Kun Zhang
Software Mentions: 4
Published: over 6 years ago

10.1007/s13205-020-02291-5

ddRAD-seq derived genome-wide SNPs, high density linkage map and QTLs for fruit quality traits in strawberry (Fragaria x ananassa)
Cited by: 3
Author(s): Sathishkumar Natarajan, Mohammad Rashed Hossain, Hoy‐Taek Kim, Denison Michael Immanuel Jesse, Mostari Jahan Ferdous, Hee-Jeong Jung, Jong-In Park, Ill Sup Nou
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0001274

Gene Expression Patterns in Larval Schistosoma mansoni Associated with Infection of the Mammalian Host
Cited by: 88
Author(s): Sophia J. Parker-Manuel, Alasdair Ivens, G. Dillon, R. A. Wilson
Software Mentions: 4
Published: about 15 years ago

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