10.3390/cancers13184687

Bacteria-Derived Extracellular Vesicles in Urine as a Novel Biomarker for Gastric Cancer: Integration of Liquid Biopsy and Metagenome Analysis
Cited by: 7
Author(s): Jae Yong Park, Chil Sung Kang, Ho Chan Seo, Jin Chul Shin, Sung Min Kym, Young Soo Park, Tae Seop Shin, Jae Gyu Kim, Yoon Keun Kim
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2017.00737

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Cited by: 27
Author(s): Jasna Kovač, Kevin J. Cummings, Lorraine D. Rodriguez‐Rivera, Laura M. Carroll, Anil J. Thachil
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pgen.1005474

Genome-Wide Analysis of PAPS1-Dependent Polyadenylation Identifies Novel Roles for Functionally Specialized Poly(A) Polymerases in Arabidopsis thaliana
Cited by: 16
Author(s): Christian Kappel, Gerda Trost, Hjördis Czesnick, Anna Ramming, Benjamin Kolbe, Son Lang, Cláudia Bispo, Jörg Becker, Cornelia H. de Moor, Michael Lenhard
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pgen.1009364

A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots
Cited by: 14
Author(s): Braedan M. McCluskey, Susumu Uji, Joseph L. Mancusi, John H. Postlethwait, David M. Parichy
Software Mentions: 4
Published: over 5 years ago

10.1371/currents.outbreaks.90e80717c4e67e1a830f17feeaaf85de

Integrating Environmental Monitoring and Mosquito Surveillance to Predict Vector-borne Disease: Prospective Forecasts of a West Nile Virus Outbreak
Cited by: 22
Author(s): Justin K. Davis, Geoffrey P. Vincent, Michael B. Hildreth, Lon Kightlinger, Christopher Carlson, Michael C. Wimberly
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-89002-z

Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
Cited by: 24
Author(s): William Johnston, Bob T. Rosier, Alejandro Artacho, Michael Paterson, Krystyna Piela, Christopher Delaney, Jason L. Brown, Gordon Ramage, Álex Mira, Shauna Culshaw
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008347

Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 5 years ago

10.3390/biom11091303

Determination of Butyrate Synthesis Capacity in Gut Microbiota: Quantification of but Gene Abundance by qPCR in Fecal Samples
Cited by: 5
Author(s): Nikola Ďásková, Marie Heczková, István Módos, Petra Vídeňská, Petra Šplíchalová, Helena Pelantová, Marek Kuzma, Jan Gojda, Monika Cahová
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-84532-y

18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 5 years ago

10.3389/fmed.2021.637652

Diagnosis of Fibrosis Using Blood Markers and Logistic Regression in Southeast Asian Patients With Non-alcoholic Fatty Liver Disease
Cited by: 6
Author(s): Chao Sang, Hongmei Yan, Wah Kheong Chan, Xiaopeng Zhu, Tao Sun, Xinxia Chang, Mingfeng Xia, Xiaoyang Sun, Xiaowen Hu, Xin Gao, Jia Wang, Hua Bian, Tianlu Chen, Guoxiang Xie
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/8834578

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury
Cited by: 3
Author(s): Siyang Wang, Jie Gao, Yiwei Song, Guangyan Cai, Xiangmei Chen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82866-1

The protective role of daidzein in intestinal health of turbot (Scophthalmus maximus L.) fed soybean meal-based diets
Cited by: 14
Author(s): Guijuan Yu, Yang Liu, Weihao Ou, Jihong Dai, Qinghui Ai, Wenbing Zhang, Kangsen Mai, Yan-Jiao Zhang
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12123639

Single-Cell RNA Sequencing of a Postmenopausal Normal Breast Tissue Identifies Multiple Cell Types That Contribute to Breast Cancer
Cited by: 13
Author(s): Sen Peng, Lora L. Hebert, Jennifer Eschbacher, Suwon Kim
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.00138

Feeding a High Concentration Diet Induces Unhealthy Alterations in the Composition and Metabolism of Ruminal Microbiota and Host Response in a Goat Model
Cited by: 71
Author(s): Chenlei Hua, Jing Tian, Ping Tian, Rihua Cong, Yanwen Luo, Geng Yang, Shiyu Tao, Yingdong Ni, Ruqian Zhao
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-83901-x

Continuous glucose monitoring during pregnancy in healthy mice
Cited by: 4
Author(s): Caroline Wuyts, Caroline Simoens, Shirly Pinto, Koenraad Philippaert, Rudi Vennekens
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-87137-7

Distinct SARS-CoV-2 antibody reactivity patterns in coronavirus convalescent plasma revealed by a coronavirus antigen microarray
Cited by: 10
Author(s): Rafael de Assis, Aarti Jain, Rie Nakajima, Algis Jasinskas, Saahir Khan, Huw Davies, Laurence Corash, Larry J. Dumont, Kathleen Kelly, Graham Simmons, Mars Stone, Clara Di Germanio, Michael P. Busch, Philip L. Felgner
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.01390

Alterations in Circulating Fatty Acid Are Associated With Gut Microbiota Dysbiosis and Inflammation in Multiple Sclerosis
Cited by: 94
Author(s): Marina Saresella, Ivana Marventano, Monica Barone, Francesca La Rosa, Federica Piancone, Laura Mendozzi, Alessia d’Arma, Valentina Rossi, Luigi Pugnetti, Gabriella Roda, Eleonora Casagni, Michele Dei, Rita Paroni, Patrizia Brigidi, Silvia Turroni, Mario Clerici
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.0060083

Gene–Environment Interaction in Yeast Gene Expression
Cited by: 368
Author(s): Erin N. Smith, Leonid Kruglyak
Software Mentions: 4
Published: over 18 years ago

10.1038/s41598-020-76025-1

Prediction of survival and recurrence in patients with pancreatic cancer by integrating multi-omics data
Cited by: 33
Author(s): Bin Baek, Hyunju Lee
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2019.02985

TCR Convergence in Individuals Treated With Immune Checkpoint Inhibition for Cancer
Cited by: 29
Author(s): Timothy J. Looney, Denise Topacio-Hall, Geoffrey Lowman, Jeffrey M. Conroy, Carl Morrison, David Y. Oh, Lawrence Fong, Li Zhang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1009131

MiDAS—Meaningful Immunogenetic Data at Scale
Cited by: 9
Author(s): Maciej Migdał, Dan Fu Ruan, William F. Forrest, Amir Horowitz, Christian Hammer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0157665

Development and Validation of a New Clinical Scale for Infants with Acute Respiratory Infection: The ReSVinet Scale
Cited by: 35
Author(s): Antonio José Justicia-Grande, Jacobo Pardo‐Seco, Miriam Cebey-López, Lucía Vilanova‐Trillo, Alberto Gómez‐Carballa, Irene Rivero‐Calle, María Puente-Puig, Carmen Curros-Novo, José Gómez-Rial, Antonio Salas, José María Martinón-Sánchez, Lorenzo Redondo-Collazo, Carmen Rodrı́guez-Tenreiro, Federico Martinón‐Torres
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-020-77263-z

Musical coordination in a large group without plans nor leaders
Cited by: 9
Author(s): Louise Goupil, Pierre Saint‐Germier, Gaëlle Rouvier, Diemo Schwarz, Clément Canonne
Software Mentions: 4
Published: almost 6 years ago

10.3390/plants10081596

Screening for Higher Grain Yield and Biomass among Sixty Bread Wheat Genotypes Grown under Elevated CO2 and High-Temperature Conditions
Cited by: 11
Author(s): Emilio L. Marcos-Barbero, Pilar Pérez Pérez, Rafael Martínez‐Carrasco, Juan B. Arellano, Rosa Morcuende
Software Mentions: 4
Published: about 5 years ago

10.1002/bimj.201800053

Powerful testing via hierarchical linkage disequilibrium in haplotype association studies
Cited by: 5
Author(s): Brunilda Balliu, Jeanine J. Houwing-Duistermaat, Stefan Böhringer
Software Mentions: 4
Published: over 7 years ago

10.1242/bio.012922

Direct lateral maneuvers in hawkmoths
Cited by: 22
Author(s): Jeremy S. M. Greeter, Tyson L. Hedrick
Software Mentions: 4
Published: over 10 years ago

10.3389/fimmu.2021.670500

Chronic Stress-Induced Depression and Anxiety Priming Modulated by Gut-Brain-Axis Immunity
Cited by: 40
Author(s): Susan Westfall, Francesca Caracci, Molly Estill, Tal Frolinger, Li Shen, Giulio Maria Pasinetti
Software Mentions: 4
Published: about 5 years ago

10.1242/bio.049809

Single cell force profiling of human myofibroblasts reveals a biophysical spectrum of cell states
Cited by: 6
Author(s): T. B. Layton, Lynn M. Williams, Huw Colin‐York, Fiona E. McCann, Marisa Cabrita, Marc Feldmann, Cameron Brown, Weilin Xie, Marco Fritzsche, Dominic Furniss, Jagdeep Nanchahal
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-70582-1

Morphological and genome-wide evidence for natural hybridisation within the genus Stipa (Poaceae)
Cited by: 17
Author(s): Evgenii Baiakhmetov, Arkadiusz Nowak, Polina D. Gudkova, Marcin Nobis
Software Mentions: 4
Published: about 6 years ago

10.3390/plants10040793

Differential Epigenetic Marks Are Associated with Apospory Expressivity in Diploid Hybrids of Paspalum rufum
Cited by: 4
Author(s): Mariano Soliman, Maricel Podio, G. Marconi, Marco Di Marsico, Juan Pablo Amelio Ortiz, Emidio Albertini, Luciana Delgado
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-021-01860-3

Niche partitioning between sympatric wild canids: the case of the golden jackal (Canis aureus) and the red fox (Vulpes vulpes) in north-eastern Italy
Cited by: 7
Author(s): Elisa Torretta, Luca Riboldi, E. Costa, Claudio Delfoco, Erica Frignani, Alberto Meriggi
Software Mentions: 4
Published: about 5 years ago

10.3390/plants10071311

Brassinolide Enhances the Level of Brassinosteroids, Protein, Pigments, and Monosaccharides in Wolffia arrhiza Treated with Brassinazole
Cited by: 8
Author(s): Magdalena Chmur, Andrzej Bajguz
Software Mentions: 4
Published: about 5 years ago

10.1007/s00204-016-1781-0

High-content imaging-based BAC-GFP toxicity pathway reporters to assess chemical adversity liabilities
Cited by: 50
Author(s): Steven Wink, Steven Hiemstra, Bram Herpers, Bob van de Water
Software Mentions: 4
Published: about 10 years ago

10.3390/plants10020225

Incorporating Drought and Submergence Tolerance QTL in Rice (Oryza sativa L.)—The Effects under Reproductive Stage Drought and Vegetative Stage Submergence Stresses
Cited by: 11
Author(s): Asmuni Mohd Ikmal, Abd Aziz Shamsudin Noraziyah, R. Wickneswari
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2018.00183

Network-Based Predictors of Progression in Head and Neck Squamous Cell Carcinoma
Cited by: 20
Author(s): Nasim Sanati, Ovidiu D. Iancu, Guanming Wu, Jan Jacobs, Shannon K. McWeeney
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-73948-7

Physical properties of epilithic river biofilm as a new lead to perform pollution bioassessments in overseas territories
Cited by: 3
Author(s): Dominique Monti, Cédric Hubas, Xavier Lourenço, Farid Begarin, Alexandre Haouisée, Laurence Romana, Estelle Lefrançois, Alexandra Jestin, Hélène Budzinski, Nathalie Tapie, Théo Risser, Jean-Louis Mansot, Philippe Keith, Olivier Gros, Pascal J. Lopez, Béatrice Lauga
Software Mentions: 4
Published: almost 6 years ago

10.1093/bioinformatics/btx308

twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis
Cited by: 25
Author(s): Anthony Chiu, Mahmood Ayub, Caroline Dive, Gerard Brady, Crispin Miller
Software Mentions: 4
Published: over 9 years ago

10.1186/s12862-021-01870-1

Differential allocation in a gift-giving spider: males adjust their reproductive investment in response to female condition
Cited by: 4
Author(s): Diego Solano-Brenes, Luiz Ernesto Costa-Schmidt, María J. Albo, Glauco Machado
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.556267

Genome Complexity Reduction High-Throughput Genome Sequencing of Green Iguana (Iguana iguana) Reveal a Paradigm Shift in Understanding Sex-Chromosomal Linkages on Homomorphic X and Y Sex Chromosomes
Cited by: 13
Author(s): Tassika Koomgun, Nararat Laopichienpong, Worapong Singchat, Thitipong Panthum, Rattanin Phatcharakullawarawat, Ekaphan Kraichak, Siwapech Sillapaprayoon, Syed Farhan Ahmad, Narongrit Muangmai, Surin Peyachoknagul, Prateep Duengkae, Tariq Ezaz, Kornsorn Srikulnath
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12898-019-0270-8

Increased songbird nest depredation due to Aleppo pine (Pinus halepensis) encroachment in Mediterranean shrubland
Cited by: 5
Author(s): Asaf Ben-David, Hila Shamon, Ido Izhaki, Ronny Efronny, Roi Maor, Tamar Dayan
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13722-019-0152-6

Short screening tools for risky drinking in Aboriginal and Torres Strait Islander Australians: modified AUDIT-C and a new approach
Cited by: 13
Author(s): K. S. Kylie Lee, James H. Conigrave, Scott Wilson, Jimmy Perry, Sarah Callinan, Robin Room, Tanya Chikritzhs, Tim Slade, Noel Hayman, Geoffrey Leggat, Katherine M. Conigrave
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-018-0205-9

Inter-individual consistency in habitat selection patterns and spatial range constraints of female little bustards during the non-breeding season
Cited by: 8
Author(s): Francesc Cuscó, Laura Cardador, Gérard Bota, Manuel B. Morales, Santi Mañosa
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2019.00951

Perinatal Bisphenol A Exposure and Reprogramming of Imprinted Gene Expression in the Adult Mouse Brain
Cited by: 11
Author(s): Maureen A. Malloy, Joseph Kochmanski, Tamara R. Jones, Justin A. Colacino, Jaclyn M. Goodrich, Dana C. Dolinoy, Laurie K. Svoboda
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-69856-5

Intracellular and tissue specific expression of FTO protein in pig: changes with age, energy intake and metabolic status
Cited by: 6
Author(s): Karolina Ferenc, Tomaš Pilžys, Damian Garbicz, Michał Marcinkowski, Oleksandr Skorobogatov, Małgorzata Dylewska, Zdzisław Gajewski, Elżbieta Grzesiuk, R. Zabielski
Software Mentions: 4
Published: about 6 years ago

10.3897/BDJ.4.e8032

Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region
Cited by: 3
Author(s): Flávia A. Esteves, Brian L. Fisher
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1002658

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome
Cited by: 113
Author(s): Heike Wollmann, Sarah Holec, Keith Alden, Neil D. Clarke, Pierre-Étienne Jacques, Frédéric Berger
Software Mentions: 4
Published: over 14 years ago

10.1098/rstb.2015.0212

Ochre star mortality during the 2014 wasting disease epizootic: role of population size structure and temperature
Cited by: 100
Author(s): Morgan E. Eisenlord, Maya L. Groner, Reyn Yoshioka, Joel K. Elliott, Jeffrey Maynard, Steven C. Fradkin, Margaret Turner, Katie Pyne, Natalie Rivlin, Ruben van Hooidonk, C. Drew Harvell
Software Mentions: 4
Published: over 10 years ago

10.3389/fgene.2019.00826

Evaluation of DNA Extraction Methods on Individual Helminth Egg and Larval Stages for Whole-Genome Sequencing
Cited by: 27
Author(s): Stephen R. Doyle, Geetha Sankaranarayanan, Fiona Allan, Duncan Berger, Pablo David Jimenez Castro, James B. Collins, Thomas Crellen, María A. Duque-Correa, Peter Ellis, Tegegn G. Jaleta, Roz Laing, Kirsty Maitland, Catherine McCarthy, Tchonfienet Moundai, Ben Softley, Elizabeth A. Thiele, Philippe Tchindebet Ouakou, John Vianney Tushabe, Joanne P. Webster, Adam Weiss, James B. Lok, Eileen Devaney, Ray M. Kaplan, James A. Cotton, Matthew Berriman, Nancy Holroyd
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2020.614888

Integrated Analysis of Immunity- and Ferroptosis-Related Biomarker Signatures to Improve the Prognosis Prediction of Hepatocellular Carcinoma
Cited by: 41
Author(s): Xuanlong Du, Zhang Ye-wei
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00952

The Association Analysis of GPNMB rs156429 With Clinical Manifestations in Chinese Population With Parkinson's Disease
Cited by: 1
Author(s): Jin Liu, Gen Li, Yanfang He, Guoping He, Pingchen Zhang, Xin Shen, Weishan Zhang, Shengdi Chen, Shishuang Cui, Yuyan Tan
Software Mentions: 4
Published: about 6 years ago

10.3390/ani10091578

Pilot Study of the Relationship between Deck Level and Journey Duration on Plasma Cortisol, Epinephrine and Norepinephrine Levels in Italian Heavy Pigs
Cited by: 9
Author(s): Giancarlo Bozzo, Barbara Padalino, Elisabetta Bonerba, Roberta Barrasso, Vincenzo Tufarelli, Martina Zappaterra, Edmondo Ceci
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2019.00232

Central and Peripheral Changes in FOS Expression in Schizophrenia Based on Genome-Wide Gene Expression
Cited by: 10
Author(s): Jing Huang, Fangkun Liu, Bolun Wang, Hui Tang, Ziwei Teng, Lehua Li, Yan Qiu, Haishan Wu, Jindong Chen
Software Mentions: 4
Published: over 7 years ago

10.1038/bcj.2016.77

lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome
Cited by: 40
Author(s): Domenica Ronchetti, Martina Manzoni, Luca Agnelli, Cristina Vinci, Sonia Fabris, Giovanna Cutrona, Serena Matis, Monica Colombo, S. Galletti, Elisa Taìana, Anna Grazia Recchia, Sabrina Bossio, Massimo Gentile, Caterina Musolino, Francesco Di Raimondo, Andrea Grilli, Silvio Bicciato, Agostino Cortelezzi, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-020-65952-8

Effects of nitrogen deposition and litter layer management on soil CO2, N2O, and CH4 emissions in a subtropical pine forestland
Cited by: 11
Author(s): Jianling Fan, Xueyong Pang, B.G. McConkey, Noura Ziadi
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.8486

Patterns of biodiversity response along a gradient of forest use in Eastern Amazonia, Brazil
Cited by: 7
Author(s): Sérgio Milheiras, Marcelino Carneiro Guedes, Fernando A. B. Silva, Perseu Silva Aparicio, Georgina M. Mace
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.8952

The corepressor NCOR1 and OCT4 facilitate early reprogramming by suppressing fibroblast gene expression
Cited by: 6
Author(s): Georgina Peñalosa-Ruiz, Klaas W. Mulder, G.J.C. Veenstra
Software Mentions: 4
Published: over 6 years ago

10.1186/s12898-016-0104-x

A century of morphological variation in Cyprinidae fishes
Cited by: 19
Author(s): Stephen J. Jacquemin, Mark Pyron
Software Mentions: 4
Published: almost 10 years ago

10.7717/peerj.8885

Reduced fish diversity despite increased fish biomass in a Gulf of California Marine Protected Area
Cited by: 5
Author(s): Georgina Ramírez‐Ortiz, Héctor Reyes‐Bonilla, Eduardo F. Balart, Damien Olivier, Leonardo Huato‐Soberanis, Fiorenza Micheli, Graham J. Edgar
Software Mentions: 4
Published: over 6 years ago

10.3758/s13428-021-01643-0

Reliability of web-based affective auditory stimulus presentation
Cited by: 5
Author(s): Tricia Seow, Tobias Hauser
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: almost 14 years ago

10.1038/s41598-021-82196-2

Benchmarking of numerical integration methods for ODE models of biological systems
Cited by: 22
Author(s): Philipp Städter, Yannik Schälte, Leonard Schmiester, Jan Hasenauer, Paul Stapor
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10594

Identification of hub genes and biological pathways in hepatocellular carcinoma by integrated bioinformatics analysis
Cited by: 6
Author(s): Qian Zhao, Yan Zhang, Shichun Shao, Yeqing Sun, Zhengkui Lin
Software Mentions: 4
Published: over 5 years ago

10.1007/s00265-012-1371-y

Walk the line—dispersal movements of gray mouse lemurs (Microcebus murinus)
Cited by: 32
Author(s): Susanne Schliehe-Diecks, M. Eberle, Peter M. Kappeler
Software Mentions: 4
Published: about 14 years ago

10.1093/beheco/arab027

Early life experience influences dispersal in coyotes (<i>Canis latrans</i>)
Cited by: 10
Author(s): Emily Zepeda, Eric Payne, Ashley M. Wurth, Andrew Sih, Stanley D. Gehrt
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-59415-3

Incentive motivation improves numerosity discrimination: Insights from pupillometry combined with drift-diffusion modelling
Cited by: 10
Author(s): Annika Dix, Shu‐Chen Li
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.3543

A longitudinal study of the diabetic skin and wound microbiome
Cited by: 83
Author(s): Melissa Gardiner, Mauro Vicaretti, Jill Sparks, Sunaina Bansal, Stephen Bush, Mengmeng Liu, Aaron E. Darling, Elizabeth J. Harry, Catherine Burke
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-58413-9

Chronotype assessment via a large scale socio-demographic survey favours yearlong Standard time over Daylight Saving Time in central Europe
Cited by: 25
Author(s): Martin Sládek, Michaela Kudrnáčová Röschová, Věra Adámkova, Dana Hamplová, Alena Sumová
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-59955-8

Vaginal microbiota diverges in sows with low and high reproductive performance after porcine reproductive and respiratory syndrome vaccination
Cited by: 14
Author(s): Letícia P Sanglard, Stephan Schmitz‐Esser, Kent Gray, Daniel Linhares, Carl J. Yeoman, Jack C. M. Dekkers, Megan C. Niederwerder, Nick V. L. Serão
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-61273-y

Comprehensive transcriptome profiling of Taiwanese colorectal cancer implicates an ethnic basis for pathogenesis
Cited by: 8
Author(s): Shao‐Min Wu, Wen‐Sy Tsai, Sum-Fu Chiang, Yi-Hsuan Lai, Chung‐Pei Ma, Jianhua Wang, Jeng-Feng Lin, Pei-Shan Lu, Chao-Ping Yang, Bertrand Chin‐Ming Tan, Hsuan Liu
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.01540

Deciphering the Composition and Functional Profile of the Microbial Communities in Chinese Moutai Liquor Starters
Cited by: 76
Author(s): Shu Heng Gan, Fan Yang, Sunil Kumar Sahu, Ru Ye Luo, Shui Lin Liao, He Yu Wang, Tao Jin, Li Wang, Peng Fan Zhang, Xin Liu, Jin Xu, Jianlong Xu, Ya Yu Wang, Huan Liu
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.3858

Learning performance and brain structure of artificially-reared honey bees fed with different quantities of food
Cited by: 15
Author(s): Karin Steijven, Johannes Spaethe, Ingolf Steffan‐Dewenter, Stephan Härtel
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.9883

Mayfly emergence production and body length response to hydrology in a tropical lowland stream
Cited by: 4
Author(s): Pablo E. Gutiérrez‐Fonseca, Alonso Ramírez
Software Mentions: 4
Published: about 6 years ago

10.3389/fcimb.2021.665159

Beneficial Effect of Alkaloids From Sophora alopecuroides L. on CUMS-Induced Depression Model Mice via Modulating Gut Microbiota
Cited by: 18
Author(s): Ming Zhang, Aoqiang Li, Qifang Yang, Jingyi Li, Lihua Wang, Xiuxian Liu, Yanxin Huang, Lei Liu
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8042

Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA
Cited by: 44
Author(s): Ângelo F. Bernardino, Fabiano Sviatopolk-Mirsky Pais, Louisi Souza de Oliveira, Fabrício Ângelo Gabriel, Tiago Osório Ferreira, Hermano Melo Queiroz, Ana Carolina de Azevedo Mazzuco
Software Mentions: 4
Published: almost 7 years ago

10.3390/ani11092497

Human Decision-Making as a Key Factor in the Risk of Wolf–Dog Interactions during Outdoor Activities
Cited by: 3
Author(s): Andżelika Haidt, Radosław Gawryś, Maciej Szewczyk
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2156-11-94

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
Cited by: 3,502
Author(s): Thibaut Jombart, Sébastien Devillard, François Balloux
Software Mentions: 4
Published: over 16 years ago

10.7717/peerj.10856

Divergent morphological responses to millennia of climate change in two species of bats from Hall’s Cave, Texas, USA
Cited by: 1
Author(s): М. С. Мороз, Illiam S. C. Jackson, Daniel Ramirez, Melissa E. Kemp
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2020.00067

Fc-Linked IgG N-Glycosylation in FcγR Knock-Out Mice
Cited by: 6
Author(s): Olga O. Zaytseva, Michaela Seeling, Jasminka Krištić, Gordan Lauc, Marija Pezer, Falk Nimmerjahn
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-57840-y

Assessment of malathion toxicity on cytophysiological activity, DNA damage and antioxidant enzymes in root of Allium cepa model
Cited by: 39
Author(s): Akhileshwar Kumar Srivastava, Divya Singh
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-61394-4

Janzen-Connell effects shape gene flow patterns and realized fitness in the tropical dioecious tree Spondias purpurea (ANACARDIACEAE)
Cited by: 7
Author(s): E. Jacob Cristóbal‐Pérez, Eric J. Fuchs, Ulises Olivares-Pinto, Maurício Quesada
Software Mentions: 4
Published: over 6 years ago

10.1186/1752-0509-4-159

Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models
Cited by: 6
Author(s): Dietrich Trümbach, Cornelia Graf, Benno Pütz, Claudia Kühne, Marcus Panhuysen, Peter Weber, Florian Holsboer, Wolfgang Wurst, Gerhard Welzl, Jan M. Deussing
Software Mentions: 4
Published: almost 16 years ago

10.3389/fnagi.2020.00059

Gamified Motor Training With Tangible Robots in Older Adults: A Feasibility Study and Comparison With the Young
Cited by: 5
Author(s): Arzu Güneysu Özgür, Maximilian J. Wessel, Jennifer K. Olsen, Wafa Johal, Ayberk Özgür, Friedhelm C. Hummel, Pierre Dillenbourg
Software Mentions: 4
Published: over 6 years ago

10.12688/f1000research.4856.2

Thrombocytosis portends adverse prognostic significance in patients with stage II colorectal carcinoma
Cited by: 12
Author(s): Tianhua Guo, Marcin Krzystanek, Zoltán Szállási, A Szállaśi
Software Mentions: 4
Published: almost 12 years ago

10.1186/s13722-021-00231-z

Alcohol consumption and dependence is linked to the extent that people experience need satisfaction while drinking alcohol in two Aboriginal and Torres Strait Islander communities
Cited by: 5
Author(s): James H. Conigrave, Emma L. Bradshaw, Katherine M. Conigrave, Richard M. Ryan, Scott Wilson, Jimmy Perry, Michael Doyle, K. S. Kylie Lee
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.2-71.v2

Using Akaike's information theoretic criterion in mixed-effects modeling of pharmacokinetic data: a simulation study
Cited by: 17
Author(s): Erik Olofsen, Albert Dahan
Software Mentions: 4
Published: over 12 years ago

10.1186/s12885-019-5501-z

Elucidating the transcriptional program of feline injection-site sarcoma using a cross-species mRNA-sequencing approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey, Maureen K. Larson, Noah Berlow, Donasian O. Ochola, Christopher Shiprack, Amita Kashyap, Bernard Séguin, Charles Keller, Christiane V. Löhr
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.7960

Squirrel monkey responses to information from social demonstration and individual exploration using touchscreen and object choice tasks
Cited by: 4
Author(s): Elizabeth Renner, Mark Atkinson, Christine A. Caldwell
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.11286

Intraspecific morphological variation of <i>Bellidiastrum michelii</i> (Asteraceae) along a 1,155 m elevation gradient in the Tatra Mountains
Cited by: 3
Author(s): Piotr Kiełtyk
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0229873

Development of a methodology to make individual estimates of the precision of liquid chromatography-tandem mass spectrometry drug assay results for use in population pharmacokinetic modeling and the optimization of dosage regimens
Cited by: 7
Author(s): Gellért Balázs Karvaly, Michael Neely, K Kovács, István Vincze, Barna Vásárhelyi, Roger W. Jelliffe
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.9388

Geographic variation in the skull morphology of the lesser grison (<i>Galictis cuja</i>: Carnivora, Mustelidae) from two Brazilian ecoregions
Cited by: 4
Author(s): Raissa Prior Migliorini, Rodrigo Fornel, Carlos Benhur Kasper
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-56631-4

Helicobacter pylori infection associates with fecal microbiota composition and diversity
Cited by: 41
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Corinna Bang, André Franke, Kathrin Zimmermann, Matthias Nauck, Uwe Völker, Henry Völzke, Reiner Biffar, Christian Schulz, Julia Mayerle, Frank Ulrich Weiss, Georg Homuth, Markus M. Lerch
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0244298

Adélie penguins foraging consistency and site fidelity are conditioned by breeding status and environmental conditions
Cited by: 7
Author(s): Candice Michelot, Akira Kato, Thierry Raclot, Yan Ropert‐Coudert
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10146

Long-term participation in collaborative fisheries research improves angler opinions on marine protected areas
Cited by: 8
Author(s): Erica T. Mason, Allison N. Kellum, Jennifer A. Chiu, Grant T. Waltz, Samantha Murray, Dean E. Wendt, Richard M. Starr, Brice X. Semmens
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0036634

Do Natural Proteins Differ from Random Sequences Polypeptides? Natural vs. Random Proteins Classification Using an Evolutionary Neural Network
Cited by: 23
Author(s): Davide De Lucrezia, Debora Slanzi, Irene Poli, Fabio Polticelli, Giovanni Minervini
Software Mentions: 4
Published: over 14 years ago

10.12688/f1000research.25540.1

Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification
Cited by: 2
Author(s): Linto Antony, Gavin Fenske, Radhey S. Kaushik, T. G. Nagaraja, M. G. Thomas, Joy Scaria
Software Mentions: 4
Published: about 6 years ago

10.1093/aobpla/ply023

Within- and trans-generational plasticity: seed germination responses to light quantity and quality
Cited by: 14
Author(s): Katherine Vayda, Kathleen Donohue, Gabriela Alejandra Auge
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.6378

Density dependent attributes of fish aggregative behaviour
Cited by: 11
Author(s): Michaela Holubová, Martin Čech, Mojmír Vašek, Jiří Peterka
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0247900

Ecological impacts of the LED-streetlight retrofit on insectivorous bats in Singapore
Cited by: 3
Author(s): Kenneth Ee Meng Lee, Deon Lum, Joanna L. Coleman
Software Mentions: 4
Published: over 5 years ago