Ecosyste.ms: Papers

10.1002/1878-0261.12348

Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer
Cited by: 38
Author(s): Keefe Murphy, Brendan Murphy, Susie Boyce, Louise Flynn, Sarah Gilgunn, Colm J. O’Rourke, Cathy Rooney, Henning Stöckmann, Anna Walsh, Stephen P. Finn, Richard O’Kennedy, John O’Leary, Stephen R. Pennington, Antoinette S. Perry, Pauline M. Rudd, Radka Saldova, Orla Sheils, Denis C. Shields, R. William G. Watson
Software Mentions: 7
Published: about 6 years ago

10.1186/2040-2392-5-38

Integrative proteomic analysis of the NMDA NR1 knockdown mouse model reveals effects on central and peripheral pathways associated with schizophrenia and autism spectrum disorders
Cited by: 31
Author(s): Hendrik Wesseling, Paul C. Guest, Chi-Ming Lee, Erik H. F. Wong, Hassan Rahmoune, Sabine Bahn
Software Mentions: 3
Published: about 10 years ago

10.1186/s12870-019-2166-3

Transcriptomic and proteomic analysis reveals mechanisms of low pollen-pistil compatibility during water lily cross breeding
Cited by: 10
Author(s): Caixia Sun, Fadi Chen, Nianjun Teng, Yue-Mei Yao, Xi Shan, Zhigang Dai
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13068-020-1651-0

Proteomic analysis reflects an environmental alkalinization-coupled pH-dependent mechanism of regulating lignocellulases in Trichoderma guizhouense NJAU4742
Cited by: 6
Author(s): Youzhi Miao, Xing Chen, Tuo Li, Han Zhu, Tang Si-yu, Dongyang Liu, Qirong Shen
Software Mentions: 3
Published: over 4 years ago

10.3389/fphys.2020.00275

Computational Approach to Identifying Universal Macrophage Biomarkers
Cited by: 22
Author(s): Dharanidhar Dang, Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S. Prince, Debashis Sahoo
Software Mentions: 2
Published: over 4 years ago

10.1186/s12894-016-0129-7

Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases
Cited by: 30
Author(s): Zhaohui Chen, Jayoung Kim
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0131908

Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish
Cited by: 12
Author(s): Christoph Seiler, Nichole Gebhart, Yong Zhang, Susan A. Shinton, Yuesheng Li, Nicola L. Ross, Xingjun Liu, Qin Li, Alison N. Bilbee, Gaurav K. Varshney, Shawn M. Burgess, Jorune Balciuniene, Darius Balciunas, Richard R. Hardy, Dietmar J. Kappes, David L. Wiest, Jennifer Rhodes
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-39406-9

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
Cited by: 32
Author(s): Thiago Moreno L. Souza, Yasmine Rangel Vieira, Edson Delatorre, Giselle Barbosa-Lima, Raul Leal Faria Luiz, AG Vizzoni, Komal Jain, Mauro Sayão de Miranda, Nishit Bhuva, Jan F. Gogarten, James Ng, Riddhi Thakkar, Andrea Surrage Calheiros, Ana Paula Teixeira Monteiro, Patrı́cia T. Bozza, Fernando A. Bozza, Diogo A. Tschoeke, Luciana Leomil, Marcos César Lima de Mendonça, Cintia Damasceno dos Santos Rodrigues, María Celeste Torres, Ana María Bispo de Filippis, Rita Maria Ribeiro Nogueira, Fabiano L. Thompson, Cristina Lemos, Betina Durovni, José Cerbino-Neto, Carlos Morel, W. Ian Lipkin, Nischay Mishra
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.02289-19

The Immune Protein Calprotectin Impacts Clostridioides difficile Metabolism through Zinc Limitation
Cited by: 21
Author(s): Christopher A. Lopez, William N. Beavers, Amy L. Weiss, Reece J. Knippel, Joseph P. Zackular, Walter J. Chazin, Eric P. Skaar
Software Mentions: 1
Published: over 4 years ago

10.1111/febs.15059

Multisite rate control analysis identifies ribosomal scanning as the sole high‐capacity/low‐flux‐control step in mRNA translation
Cited by: 0
Author(s): Helena Firczuk, James Teahan, Pedro Mendes, John E.G. McCarthy
Software Mentions: 1
Published: almost 5 years ago

10.3390/biology9050096

A High-Resolution Mass Spectrometry-Based Quantitative Metabolomic Workflow Highlights Defects in 5-Fluorouracil Metabolism in Cancer Cells with Acquired Chemoresistance
Cited by: 3
Author(s): Sanjay Shahi, Ang C, Suresh Mathivanan
Software Mentions: 1
Published: over 4 years ago

10.1038/srep19248

Comprehensive maternal serum proteomics identifies the cytoskeletal proteins as non-invasive biomarkers in prenatal diagnosis of congenital heart defects
Cited by: 18
Author(s): Lizhu Chen, Hui Gu, Jun Li, Zeyu Yang, Xiao Sun, Li Zhang, Liping Shan, Longfei Wu, Xiaowei Wei, Yili Zhao, Wei Ma, Henan Zhang, Songying Cao, Tzung-Chi Huang, Miao Jiang, Zhengwei Yuan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-17149-9

A Comprehensive Assessment of the Genetic Determinants in Salmonella Typhimurium for Resistance to Hydrogen Peroxide Using Proteogenomics
Cited by: 25
Author(s): Sardar Karash, Rohana Liyanage, Abdullah Qassab, Jackson O. Lay, Young Min Kwon
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-27469-z

ADAM-like Decysin-1 (ADAMDEC1) is a positive regulator of Epithelial Defense Against Cancer (EDAC) that promotes apical extrusion of RasV12-transformed cells
Cited by: 12
Author(s): Yuta Yako, Takashi Hayashi, Yasuto Takeuchi, Kojiro Ishibashi, Noboru Kasai, Narumichi Sato, Keisuke Kuromiya, Susumu Ishikawa, Yasuyuki Fujita
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.8693

The levels of serine proteases in colon tissue interstitial fluid and serum serve as an indicator of colorectal cancer progression
Cited by: 21
Author(s): Yingying Xie, Lechuang Chen, Xiaolei Lv, Guixue Hou, Wang Yang, Cuicui Jiang, Hongxia Zhu, Nuo Xu, Lin Wu, Xiaomin Lou, Siqi Liu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-40773-6

Quantitative proteomic changes in LPS-activated monocyte-derived dendritic cells: A SWATH-MS study
Cited by: 5
Author(s): Swati Arya, Dagmara Wiatrek-Moumoulidis, Silvia Synowsky, Sally L. Shirran, Catherine H. Botting, Simon J. Powis, Alan J. Stewart
Software Mentions: 1
Published: over 5 years ago

10.1155/2013/729769

Reliable Execution Based on CPN and Skyline Optimization for Web Service Composition
Cited by: 4
Author(s): Liping Chen, Weitao Ha, Guojun Zhang
Software Mentions: 1
Published: over 11 years ago

10.1038/s41392-021-00508-4

Multi-platform omics analysis reveals molecular signature for COVID-19 pathogenesis, prognosis and drug target discovery
Cited by: 40
Author(s): Yuming Li, Guixue Hou, Haibo Zhou, Yanqun Wang, Hein Min Tun, Airu Zhu, Jingxian Zhao, Fei Xiao, Shanwen Lin, Dongdong Liu, Dun-Jin Zhou, Lang Mai, Lu Zhang, Zhaoyong Zhang, Lijun Kuang, Jiao Guan, Qiushi Chen, Liyan Wen, Yanjun Zhang, Jianfen Zhuo, Fang Li, Zhen Zhuang, Chen Zhao, Ling Luo, Donglan Liu, Chunke Chen, Mian Gan, Nanshan Zhong, Jincun Zhao, Yan Ren, Yonghao Xu
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26041136

Biomarker Discovery of Acute Coronary Syndrome Using Proteomic Approach
Cited by: 1
Author(s): Miji Shin, Sang Hyun Park, Sora Mun, Jiyeong Lee, Hee-Gyoo Kang
Software Mentions: 1
Published: over 3 years ago

10.3390/md15010020

Quantitative Proteomic Profiling of Tachyplesin I Targets in U251 Gliomaspheres
Cited by: 15
Author(s): Xuan Li, Jianrong Dai, Yongjun Tang, Lulu Li, Gang Jin
Software Mentions: 1
Published: over 7 years ago