pypi: sklearn | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02451-7

Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data
Cited by: 35
Author(s): Jan Lause, Philipp Berens, Dmitry Kobak
Software Mentions: 5
Published: about 3 years ago

Prediction Model of Anastomotic Leakage Among Esophageal Cancer Patients After Receiving an Esophagectomy: Machine Learning Approach
Cited by: 3
Author(s): Ziran Zhao, Xi Cheng, Xiao Sun, Shanrui Ma, Hao Feng, Liang Zhao
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms22062846

Predicting Potential Endocrine Disrupting Chemicals Binding to Estrogen Receptor α (ERα) Using a Pipeline Combining Structure-Based and Ligand-Based in Silico Methods
Cited by: 5
Author(s): Asma Sellami, Matthieu Montès, Nathalie Lagarde
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-94422-y

Semantic segmentation of PolSAR image data using advanced deep learning model
Cited by: 30
Author(s): Rajat Garg, Anil Kumar, Nikunj Bansal, Manish Prateek, Shashi Kumar
Software Mentions: 5
Published: over 3 years ago

10.3390/s19061361

Smartbins: Using Intelligent Harvest Baskets to Estimate the Stages of Berry Harvesting
Cited by: 5
Author(s): Patricio Galeas, Carlos Muñoz, Juan Ignacio Huircán, Mario Fernández, Luis A. Segura‐Ponce, Cristian Durán-Faúndez
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22084217

MET Exon 14 Skipping: A Case Study for the Detection of Genetic Variants in Cancer Driver Genes by Deep Learning
Cited by: 5
Author(s): Vladimir Nosi, Luca Alessandrì, Melissa Milan, Maddalena Arigoni, Silvia Benvenuti, Davide Cacchiarelli, Marcella Cesana, Sara Riccardo, Lucio Di Filippo, Francesca Cordero, Marco Beccuti, Paolo M. Comoglio, Raffaele Calogero
Software Mentions: 5
Published: over 3 years ago

10.1111/acel.13320

BiT age: A transcriptome‐based aging clock near the theoretical limit of accuracy
Cited by: 45
Author(s): David Meyer, Björn Schumacher
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-65329-x

Mimicking climate warming effects on Alaskan soil microbial communities via gradual temperature increase
Cited by: 9
Author(s): Max‐Bernhard Ballhausen, Rebecca E. Hewitt, Matthias C. Rillig
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0218966

Intrinsic dimensionality of human behavioral activity data
Cited by: 1
Author(s): Luana Fragoso, Tuhin Paul, Flaviu Vadan, Kevin G. Stanley, Scott Bell, Nathaniel D. Osgood
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.650026

Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0188310

Inattention in primary school is not good for your future school achievement—A pattern classification study
Cited by: 8
Author(s): Astri J. Lundervold, Tormod Bøe
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-020-77364-9

A potential energy and mutual information based link prediction approach for bipartite networks
Cited by: 7
Author(s): Purushottam Kumar, Dolly Sharma
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0194136

Emotion computing using Word Mover’s Distance features based on Ren_CECps
Cited by: 11
Author(s): Fuji Ren, Ning Liu
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-60366-y

Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Cited by: 6
Author(s): Gordan Mimić, Sanja Brdar, M. Brkic, Marko Panić, Oskar Marko, Vladimir Crnojević
Software Mentions: 5
Published: over 4 years ago

10.3389/fnins.2021.650219

A Dissociation of Attention, Executive Function and Reaction to Difficulty: Development of the MindPulse Test, a Novel Digital Neuropsychological Test for Precise Quantification of Perceptual-Motor Decision-Making Processes
Cited by: 2
Author(s): Sandra Suárez, Bertrand Eynard, Sylvie Granon
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-35682-z

MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machine
Cited by: 39
Author(s): Chen Wang, Chun Liang
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-77367-6

An efficient machine learning-based approach for screening individuals at risk of hereditary haemochromatosis
Cited by: 4
Author(s): Patricia Martins Conde, Thomas Sauter, Thanh-Hung Nguyen
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcvm.2021.619386

Low-Density Lipoprotein Cholesterol 4: The Notable Risk Factor of Coronary Artery Disease Development
Cited by: 7
Author(s): Dongmei Wu, Qiuju Yang, Baohua Su, Hao Jia, MA Hui-rong, Weilan Yuan, Junhui Gao, Feifei Ding, Yue Xu, Huifeng Wang, Jiangman Zhao, Bingqiang Li
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-020-6517-0

Repetitive DNA content in the maize genome is uncoupled from population stratification at SNP loci
Cited by: 2
Author(s): Simon Renny‐Byfield, Andy Baumgarten
Software Mentions: 5
Published: almost 5 years ago

10.3389/fcvm.2021.663509

Development and Validation of a Random Forest Diagnostic Model of Acute Myocardial Infarction Based on Ferroptosis-Related Genes in Circulating Endothelial Cells
Cited by: 14
Author(s): Yifan Chen, Jianfeng Shi, Jun Pu
Software Mentions: 5
Published: over 3 years ago

10.1186/s12911-017-0442-4

Development and validation of classifiers and variable subsets for predicting nursing home admission
Cited by: 15
Author(s): Mikko Nuutinen, Riikka‐Leena Leskelä, Ella Suojalehto, Anniina Tirronen, Vesa Komssi
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0229502

A background correction method to compensate illumination variation in hyperspectral imaging
Cited by: 6
Author(s): Jonghee Yoon, Alexandru Grigoroiu, Sarah E. Bohndiek
Software Mentions: 5
Published: over 4 years ago

10.3390/biomedicines9050537

The Relationship between the Strength Characteristics of Cerebral Aneurysm Walls with Their Status and Laser-Induced Fluorescence Data
Cited by: 2
Author(s): E. O. Tsibulskaya, A. I. Lipovka, А. П. Чупахин, A. V. Dubovoy, D. V. Parshin, N. A. Maslov
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.00272

Inferring Personalized and Race-Specific Causal Effects of Genomic Aberrations on Gleason Scores: A Deep Latent Variable Model
Cited by: 2
Author(s): Zhong Chen, Andrea Edwards, Chindo Hicks, Kun Zhang
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.732370

An Integrative Network Science and Artificial Intelligence Drug Repurposing Approach for Muscle Atrophy in Spaceflight Microgravity
Cited by: 2
Author(s): Vidya Manian, Jairo Orozco-Sandoval, Victor Díaz-Martínez
Software Mentions: 5
Published: about 3 years ago

10.1186/s13073-019-0679-x

pTuneos: prioritizing tumor neoantigens from next-generation sequencing data
Cited by: 36
Author(s): Chi Zhou, Zhiting Wei, Zhanbing Zhang, Biyu Zhang, Chenyu Zhu, Ke Chen, Guohui Chuai, Sheng Qu, Lu Xie, Yong Gao, Qi Liu
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0189159

Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot study
Cited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: almost 7 years ago

10.1111/tpj.14312

μ<scp>CT</scp> trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
Cited by: 19
Author(s): Nathan Hughes, Hugo R. Oliveira, Nick Fradgley, Fiona Corke, James Cockram, John H. Doonan, Cândida Nibau
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj-cs.285

Deep learning based Sequential model for malware analysis using Windows exe API Calls
Cited by: 56
Author(s): Ferhat Özgür Çatak, Ahmet Faruk Yazı, Ogerta Elezaj, Javed Ahmed
Software Mentions: 4
Published: over 4 years ago

10.1007/s10822-021-00405-6

Multitask machine learning models for predicting lipophilicity (logP) in the SAMPL7 challenge
Cited by: 9
Author(s): Eelke B. Lenselink, Pieter F. W. Stouten
Software Mentions: 4
Published: over 3 years ago

10.1098/rsos.201121

Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium
Cited by: 31
Author(s): Li Cai, Lei Ren, Yongheng Wang, Wenjie Xie, Guangyu Zhu, Hao Gao
Software Mentions: 4
Published: almost 4 years ago

10.1021/acs.jctc.1c00159

Beyond Tripeptides Two-Step Active Machine Learning for Very Large Data sets
Cited by: 18
Author(s): Alexander van Teijlingen, Tell Tuttle
Software Mentions: 4
Published: over 3 years ago

10.1080/21505594.2021.1948252

Suppressed inflammation in obese children induced by a high-fiber diet is associated with the attenuation of gut microbial virulence factor genes
Cited by: 5
Author(s): Hui Li, Guojun Wu, Liping Zhao, Menghui Zhang
Software Mentions: 4
Published: over 3 years ago

10.1001/jamanetworkopen.2019.10399

Prevalence of Financial Considerations Documented in Primary Care Encounters as Identified by Natural Language Processing Methods
Cited by: 5
Author(s): Meliha Skaljic, Ihsaan Patel, Amelia M. Pellegrini, Víctor M. Castro, Roy H. Perlis, Deborah D. Gordon
Software Mentions: 4
Published: about 5 years ago

10.1093/jamiaopen/ooab066

Detecting diabetic retinopathy through machine learning on electronic health record data from an urban, safety net healthcare system
Cited by: 8
Author(s): Omolola Ogunyemi, Meghal Gandhi, Martin Lee, Senait Teklehaimanot, Lauren Patty Daskivich, David Hindman, Kevin Lopez, Ricky K. Taira
Software Mentions: 4
Published: over 3 years ago

10.1016/j.gpb.2018.08.003

VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder
Cited by: 159
Author(s): Dongfang Wang, Jin Gu
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2019.00600

Five-Feature Model for Developing the Classifier for Synergistic vs. Antagonistic Drug Combinations Built by XGBoost
Cited by: 38
Author(s): Xiangjun Ji, Weida Tong, Zhichao Liu, Tieliu Shi
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giaa122

DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data
Cited by: 9
Author(s): Lukas M. Simon, Fangfang Yan, Zhongming Zhao
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12967-021-03015-w

Multi-parametric MRI phenotype with trustworthy machine learning for differentiating CNS demyelinating diseases
Cited by: 4
Author(s): Jing Huang, Bowen Xin, Xiuying Wang, Zhigang Qi, Hui Dong, Kuncheng Li, Yun Zhou, Jie Lu
Software Mentions: 4
Published: about 3 years ago

10.1038/s41597-019-0051-4

Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media
Cited by: 14
Author(s): Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M. Monk, Pieter C. Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard Ø. Palsson, Adam M. Feist
Software Mentions: 4
Published: over 5 years ago

10.3390/jpm11090863

Prediction of Hemorrhagic Transformation after Ischemic Stroke Using Machine Learning
Cited by: 5
Author(s): Jeong-Myeong Choi, Seung Young Seo, Pum-Jun Kim, Yu-Seop Kim, Sang-Hwa Lee, Jong-Hee Sohn, Dong Kyu Kim, Jaejun Lee, Chul‐Ho Kim
Software Mentions: 4
Published: about 3 years ago

10.1186/s13148-020-00973-8

5-Hydroxymethylcytosine profiles of cfDNA are highly predictive of R-CHOP treatment response in diffuse large B cell lymphoma patients
Cited by: 9
Author(s): Hangyu Chen, Weilong Zhang, Lei Zhang, Ping Yang, Fang Li, Zeruo Yang, Jing Wang, Pei Meng, Yun Hong, Changjian Yan, Wei Li, Jia Liu, Nuo Xu, Long Chen, Xiu-Bing Xiao, Yan Qin, Xiaohong He, Hui Liu, Haichuan Zhu, Chuan He, Jian Lin, Hongmei Jing
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.63377

DeepEthogram, a machine learning pipeline for supervised behavior classification from raw pixels
Cited by: 61
Author(s): James P Bohnslav, Nivanthika K Wimalasena, Kelsey J Clausing, Yu Dai, David A. Yarmolinsky, Tomás Cruz, Adam D Kashlan, M. Eugenia Chiappe, Lauren L. Orefice, Clifford J. Woolf, Christopher D. Harvey
Software Mentions: 4
Published: about 3 years ago

10.1093/molbev/msaa259

Discovery of Ongoing Selective Sweeps withinAnophelesMosquito Populations Using Deep Learning
Cited by: 22
Author(s): Alexander T. Xue, Daniel R. Schrider, Andrew D. Kern, Alessandra della Torre, Andrew D. Kern, Beniamino Caputo, Bilali Kabula, Bradley J. White, Charles Godfray, Constant Edi, Craig S. Wilding, Dan Neafsey, Daniel R. Schrider, David J. Conway, David Weetman, Diégo Ayala, Dominic Kwiatkowski, Igor V. Sharakhov, Janet Midega, Jianchu Xu, João Pinto, John Essandoh, Johnson Matowo, Ken Vernick, Luc Djogbénou, Mamadou B. Coulibaly, Mara Lawniczak, Martin Donnelly, Matthew W. Hahn, Michaël C. Fontaine, Michelle M. Riehle, Nora J. Besansky, Omar E. Cornejo, Robert S. McCann, Sam O’Loughlin, Vincent Robert, Alexander T. Xue, Alistair Miles, Chris S. Clarkson, C. J. Battey, Cody Champion, Frédéric Labbé, Giordano Bottà, Jeffrey R. Adrion, Joel T. Nelson, Nick Harding, Thomas J. Wang, Scott T. Small, Seth Redmond, Tiago Antão
Software Mentions: 4
Published: about 4 years ago

10.1093/molbev/msy023

RADpainter and fineRADstructure: Population Inference from RADseq Data
Cited by: 234
Author(s): Milan Malinsky, Emiliano Trucchi, Daniel J. Lawson, Daniel Falush
Software Mentions: 4
Published: almost 7 years ago

10.2196/16117

Predicting Adverse Outcomes for Febrile Patients in the Emergency Department Using Sparse Laboratory Data: Development of a Time Adaptive Model
Cited by: 3
Author(s): Sungjoo Lee, Sungchul Hong, Won Chul, Kyunga Kim
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.49748

Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with UTIs
Cited by: 41
Author(s): Anna Sintsova, Arwen E Frick-Cheng, Sara N. Smith, Ali Pirani, Sargurunathan Subashchandrabose, Evan S. Snitkin, Harry L. T. Mobley
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers13030576

Cooperative Blockade of CK2 and ATM Kinases Drives Apoptosis in VHL-Deficient Renal Carcinoma Cells through ROS Overproduction
Cited by: 17
Author(s): Sofía Giacosa, Catherine Pillet, Irinka Séraudie, Laurent Guyon, Yann Wallez, Caroline Roelants, Christophe Battail, Bertrand Evrard, Frédéric Chalmel, Caroline Barette, Emmanuelle Soleilhac, Marie-Odile Fauvarque, Q. Franquet, Clément Sarrazin, N. Peilleron, G. Fiard, Jean-Alexandre Long, Jean‐Luc Descotes, Claude Cochet, Odile Filhol
Software Mentions: 4
Published: almost 4 years ago

10.1128/mSystems.00070-17

Abiotic Stresses Shift Belowground Populus -Associated Bacteria Toward a Core Stress Microbiome
Cited by: 75
Author(s): Collin M. Timm, Kelsey Carter, Alyssa A. Carrell, Se‐Ran Jun, Sara Jawdy, Jessica M. Vélez, Lee E. Gunter, Zamin K. Yang, Intawat Nookaew, Nancy L. Engle, Tse-Yuan S. Lu, Christopher W. Schadt, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, Dale A. Pelletier, David J. Weston
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-015-0742-x

Extensive identification and analysis of conserved small ORFs in animals
Cited by: 162
Author(s): Sebastian D. Mackowiak, Henrik Zauber, Chris Bielow, Denise Thiel, Kamila Kutz, Lorenzo Calviello, Guido Mastrobuoni, Nikolaus Rajewsky, Stefan Kempa, Matthias Selbach, Benedikt Obermayer
Software Mentions: 4
Published: about 9 years ago

10.3390/s21124172

Uplink vs. Downlink: Machine Learning-Based Quality Prediction for HTTP Adaptive Video Streaming
Cited by: 7
Author(s): Frank Loh, Fabian Poignée, Florian Wamser, Ferdinand Leidinger, Tobias Hoßfeld
Software Mentions: 4
Published: over 3 years ago

10.3390/metabo11090633

A Targeted Serum Metabolomics GC-MS Approach Identifies Predictive Blood Biomarkers for Retained Placenta in Holstein Dairy Cows
Cited by: 4
Author(s): Guanshi Zhang, Dawid Tobolski, Grzegorz Zwierzchowski, Rupasri Mandal, David S. Wishart, Burim N. Ametaj
Software Mentions: 4
Published: about 3 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: over 3 years ago

10.3390/s20154228

Machine Learning Modelling and Feature Engineering in Seismology Experiment
Cited by: 6
Author(s): Michail Brykov, Ivan Petryshynets, Catalin I. Pruncu, В. Г. Ефременко, Danil Yurievich Pimenov, Khaled Giasin, Serhii Sylenko, Szymon Wojciechowski
Software Mentions: 4
Published: over 4 years ago

10.3389/fpsyt.2020.532623

Identification of Veterans With PTSD Based on EEG Features Collected During Sleep
Cited by: 3
Author(s): Swamy Laxminarayan, Chao Wang, Tatsuya Oyama, J David Cashmere, Anne Germain, Jaques Reifman
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0216453

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function
Cited by: 12
Author(s): Claire Duvallet, Kara Larson, Scott B. Snapper, Sonia Iosim, Ann Lee, Katherine Freer, Kara May, Eric J. Alm, Rachel Rosen
Software Mentions: 4
Published: over 5 years ago

10.3389/frai.2020.00023

PECLIDES Neuro: A Personalisable Clinical Decision Support System for Neurological Diseases
Cited by: 12
Author(s): Tamara Müller, Píetro Lió
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2021.694102

CEUS-Based Radiomics Can Show Changes in Protein Levels in Liver Metastases After Incomplete Thermal Ablation
Cited by: 5
Author(s): Haiwei Bao, Ting Chen, Jianjun Zhu, Haiyang Xie, Fen Chen
Software Mentions: 4
Published: about 3 years ago

10.3390/genes11090981

PreLnc: An Accurate Tool for Predicting lncRNAs Based on Multiple Features
Cited by: 6
Author(s): Lei Cao, Yupeng Wang, Changwei Bi, Qiaolin Ye, Tongming Yin, Ning Ye
Software Mentions: 4
Published: about 4 years ago

10.3390/s21072430

Time Series Forecasting of Univariate Agrometeorological Data: A Comparative Performance Evaluation via One-Step and Multi-Step Ahead Forecasting Strategies
Cited by: 17
Author(s): Saurabh Suradhaniwar, Soumyashree Kar, Surya S. Durbha, J. Adinarayana
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.652063

Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles
Cited by: 15
Author(s): Nicolas Borisov, Anna Sergeeva, Maria Suntsova, Mikhail Raevskiy, Нуршат Гайфуллин, Л. П. Менделеева, Alexander Gudkov, Maria Nareiko, Andrew Garazha, Victor Tkachev, Xinmin Li, Maxim Sorokin, В. Л. Сурин, Anton Buzdin
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-74725-2

A recursive framework for predicting the time-course of drug sensitivity
Cited by: 0
Author(s): Qi Cheng, Amin Emad, Nicholas D. Sidiropoulos
Software Mentions: 4
Published: about 4 years ago

10.1016/j.csbj.2019.02.002

Herb Target Prediction Based on Representation Learning of Symptom related Heterogeneous Network
Cited by: 18
Author(s): Ning Wang, Peng Li, Xiaochen Hu, Kuo Yang, Yonghong Peng, Qiang Zhu, Runshun Zhang, Zhuye Gao, Hao Xu, Baoyan Liu, Jianxin Chen, Xuezhong Zhou
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-45236-6

In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data
Cited by: 55
Author(s): Remzi Çelebi, Oliver Bear Don't Walk, Rajiv Movva, Semih Alpsoy, Michel Dumontier
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0200979

Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR
Cited by: 19
Author(s): Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten Suhr Jacobsen, Lars H. Hansen
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2021.626723

Beta and Theta Oscillations Correlate With Subjective Time During Musical Improvisation in Ecological and Controlled Settings: A Single Subject Study
Cited by: 5
Author(s): Nicolas Farrugia, Alix Lamouroux, Christophe Rocher, Jules Bouvet, Giulia Lioi
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.704218

RGB Three-Channel SWE-Based Ultrasomics Model: Improving the Efficiency in Differentiating Focal Liver Lesions
Cited by: 2
Author(s): Minquan Cheng, Meng-Fei Xian, Wei Tian, Ming‐De Li, Hang-Tong Hu, Wei Li, Jianchao Zhang, Yang Huang, Xiaoyan Xie, Ming-De Lü, Ming Kuang, Wei Wang, Si-Min Ruan, Li-Da Chen
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-020-64270-3

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Cited by: 17
Author(s): Jakub W Wojciechowski, Małgorzata Kotulska
Software Mentions: 4
Published: over 4 years ago

10.3389/fnins.2021.616760

Tracking Eye Movements During Sleep in Mice
Cited by: 11
Author(s): Qingshu Meng, Xinrong Tan, Chengyong Jiang, Yanyu Xiong, Biao Yan, Jiayi Zhang
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-019-39847-2

Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Cited by: 28
Author(s): Wojciech Gałan, Maciej Bąk, Małgorzata Jakubowska
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1006077

New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images
Cited by: 1
Author(s): Ilya Patrushev, Christina James-Zorn, Aldo Ciau-Uitz, Roger Patient, Michael J. Gilchrist
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.01012

The Gene Catalog and Comparative Analysis of Gut Microbiome of Big Cats Provide New Insights on Panthera Species
Cited by: 7
Author(s): Parul Mittal, Rituja Saxena, Atul Gupta, Shruti Mahajan, Vineet K. Sharma
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1006844

A new clustering and nomenclature for beta turns derived from high-resolution protein structures
Cited by: 50
Author(s): Maxim V. Shapovalov, Slobodan Vučetić, Roland L. Dunbrack
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008518

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers
Cited by: 10
Author(s): Julian Libiseller-Egger, Jody Phelan, Susana Campino, Fady Mohareb, Taane G. Clark
Software Mentions: 4
Published: almost 4 years ago

10.3389/fninf.2020.00038

Creating Neuroscientific Knowledge Organization System Based on Word Representation and Agglomerative Clustering Algorithm
Cited by: 2
Author(s): Cunqing Huangfu, Yi Zeng, Yuwei Wang
Software Mentions: 4
Published: over 4 years ago

10.1155/2021/1102083

Classification Framework for Healthy Hairs and Alopecia Areata: A Machine Learning (ML) Approach
Cited by: 10
Author(s): Choudhary Sobhan Shakeel, Saad Jawaid Khan, Beenish Moalla Chaudhry, Syeda Fatima Aijaz, Umer Hassan
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008244

Alcoholic liver disease: A registry view on comorbidities and disease prediction
Cited by: 10
Author(s): Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1009183

COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity
Cited by: 5
Author(s): В. А. Наумов, Evgeny Putin, Stefan Pushkov, E. Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M. Cope, Ramanathan Sethuraman, Tudor I. Oprea, Alexander T. Pearson, Savaş Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan V. Ozerov, Alex Aliper, Evgeny Izumchenko, Alex Zhavoronkov
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008833

PDKit: A data science toolkit for the digital assessment of Parkinson’s Disease
Cited by: 2
Author(s): Cosmin Stamate, Joan Saez Pons, David Weston, George Roussos
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-28986-7

A monocyte gene expression signature in the early clinical course of Parkinson’s disease
Cited by: 35
Author(s): J Schlachetzki, Iryna Prots, Jenhan Tao, Hyun Bae Chun, Kaoru Saijo, David Gosselin, Beate Winner, Christopher K. Glass
Software Mentions: 4
Published: over 6 years ago

10.1186/s13007-020-00620-6

Yield prediction by machine learning from UAS-based multi-sensor data fusion in soybean
Cited by: 40
Author(s): Mónica Herrero-Huerta, Pablo Rodríguez‐Gonzálvez, Katy Martin Rainey
Software Mentions: 3
Published: over 4 years ago

10.1186/s13062-020-00285-0

Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure
Cited by: 25
Author(s): Anika Liu, Moritz Walter, Peter M. Wright, Aleksandra Bartosik, Daniela Dolciami, Abdurrahman Elbasir, Hong-Chang Yang, Andreas Bender
Software Mentions: 3
Published: almost 4 years ago

10.1177/2472555218818053

Unbiased Phenotype Detection Using Negative Controls
Cited by: 2
Author(s): Antje Janosch, Carolin Kaffka, Marc Bickle
Software Mentions: 3
Published: over 5 years ago

10.3390/pharmaceutics13071026

Machine Learning Uncovers Adverse Drug Effects on Intestinal Bacteria
Cited by: 26
Author(s): Laura E. McCoubrey, Moe Elbadawi, Mine Orlu, Simon Gaisford, Abdul W. Basit
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btaa711

A semi-supervised learning framework for quantitative structure–activity regression modelling
Cited by: 5
Author(s): Oliver P. Watson, Isidro Cortés-Ciriano, James A Watson
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj-cs.389

FNG-IE: an improved graph-based method for keyword extraction from scholarly big-data
Cited by: 5
Author(s): Noman Tahir, Muhammad Asif, Shahbaz Ahmad, Muhammad Sheraz Arshad Malik, Hanan Aljuaid, Muhammad Arif Butt, Mobashar Rehman
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btx275

Neuro-symbolic representation learning on biological knowledge graphs
Cited by: 103
Author(s): Mona Alshahrani, Mohammad Asif Khan, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosiñach, Robert Hoehndorf
Software Mentions: 3
Published: over 7 years ago

10.1093/bioinformatics/btz293

A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery
Cited by: 15
Author(s): Oliver P. Watson, Isidro Cortés-Ciriano, Aimee R Taylor, James A Watson
Software Mentions: 3
Published: over 5 years ago

10.1098/rsos.181806

Accurate wisdom of the crowd from unsupervised dimension reduction
Cited by: 1
Author(s): Lingfei Wang, Tom Michoel
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.11428

Comparative transcriptome profiling of a resistant vs susceptible bread wheat (Triticum aestivum L.) cultivar in response to water deficit and cold stress
Cited by: 9
Author(s): Dmitrii K. Konstantinov, У. С. Зубаирова, Anton A. Ermakov, А. В. Дорошков
Software Mentions: 3
Published: over 3 years ago

10.18653/v1/2020.coling-main.261

Autoregressive Affective Language Forecasting: A Self-Supervised Task
Cited by: 1
Author(s): Matthew Matero, H. Andrew Schwartz
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.jbc.2021.100956

OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
Cited by: 12
Author(s): Ria Gupta, Aayushi Mittal, V. P. Agrawal, Samarth Gupta, Kavya Gupta, Rishi Raj Jain, Prakriti Garg, Sanjay Kumar Mohanty, Riya Sogani, Harshit Singh Chhabra, Vishakha Gautam, Tripti Mishra, Debarka Sengupta, Gaurav Ahuja
Software Mentions: 3
Published: over 3 years ago

10.1016/j.omtn.2020.06.004

Prediction of m5C Modifications in RNA Sequences by Combining Multiple Sequence Features
Cited by: 31
Author(s): Lijun Dou, Xiaoling Li, Hui Ding, Lei Xu, Hong‐Bing Xiang
Software Mentions: 3
Published: about 4 years ago

10.15252/msb.202010026

CODEX, a neural network approach to explore signaling dynamics landscapes
Cited by: 10
Author(s): Marc‐Antoine Jacques, Maciej Dobrzyński, Paolo Armando Gagliardi, Raphael Sznitman, Olivier Pertz
Software Mentions: 3
Published: over 3 years ago

10.1186/s13321-015-0078-2

Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field
Cited by: 120
Author(s): Maciej Wójcikowski, Piotr Zielenkiewicz, Paweł Siedlecki
Software Mentions: 3
Published: over 9 years ago

10.1186/s12889-021-11615-w

The correlation between Google trends and salmonellosis
Cited by: 5
Author(s): Ming-Yang Wang, Naijun Tang
Software Mentions: 3
Published: over 3 years ago

10.1186/s13321-016-0182-y

A novel applicability domain technique for mapping predictive reliability across the chemical space of a QSAR: reliability-density neighbourhood
Cited by: 37
Author(s): Natália Aniceto, Alex A. Freitas, Andreas Bender, Taravat Ghafourian
Software Mentions: 3
Published: almost 8 years ago

10.3390/molecules23112831

Discrimination of Chrysanthemum Varieties Using Hyperspectral Imaging Combined with a Deep Convolutional Neural Network
Cited by: 50
Author(s): Nayiyuan Wu, Chu Zhang, Xiulin Bai, Xiaoyang Du, Yong He
Software Mentions: 3
Published: about 6 years ago

10.1007/s11357-020-00297-8

Plasma dilution improves cognition and attenuates neuroinflammation in old mice
Cited by: 33
Author(s): Melod Mehdipour, Taha Mehdipour, Colin M. Skinner, Nathan Wong, Chao Liu, Chia Chien Chen, Ok Hee Jeon, Yi Zuo, Michael J. Conboy, Irina M. Conboy
Software Mentions: 3
Published: about 4 years ago

10.1186/s13148-021-01163-w

Diagnosis of pulmonary nodules by DNA methylation analysis in bronchoalveolar lavage fluids
Cited by: 10
Author(s): Lei Li, Zhujia Ye, Yang Sai, Hao Yang, Jing Jin, Yingying Zhu, Jinsheng Tao, Siyu Chen, Jiehan Xu, Yanying Li, Weihe Liang, Bo Wang, Mingli Yang, Qiaoyun Huang, Zhiwei Chen, Weimin Liu, Jian‐Bing Fan, Dan Liu
Software Mentions: 3
Published: about 3 years ago

Projects: pypi: sklearn

Papers Mentioning sklearn 559