Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: shiver
https://packages.ecosyste.ms/registries/pypi.org/packages/shiver
A multi-threaded work queue for functions compiled with llvmpy
3 versions
Latest release: over 11 years ago
9 downloads last month
Papers Mentioning shiver 9
10.1093/ve/vey007
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiverCited by: 51
Author(s): Chris Wymant, François Blanquart, Tanya Golubchik, Astrid Gall, Margreet Bakker, Daniela Bezemer, Nicholas J. Croucher, Matthew Hall, Mariska Hillebregt, Swee Hoe Ong, Oliver Ratmann, Jan Albert, Norbert Bannert, Jacques Fellay, Katrien Fransen, Annabelle Gourlay, M Kate Grabowski, Barbara Gunsenheimer‐Bartmeyer, Huldrych F Günthard, Pia Kivelä, Roger D. Kouyos, Oliver Laeyendecker, Kirsi Liitsola, Laurence Meyer, Kholoud Porter, Matti Ristola, Ard van Sighem, Ben Berkhout, Marion Cornelissen, Paul Kellam, Peter Reiss, Christophe Fraser
Software Mentions: 4
Published: almost 7 years ago
10.1093/molbev/msx304
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic DiversityCited by: 109
Author(s): Chris Wymant, Matthew Hall, Oliver Ratmann, David Bonsall, Tanya Golubchik, Mariateresa de Cesare, Astrid Gall, Marion Cornelissen, Christophe Fraser
Software Mentions: 3
Published: about 7 years ago
10.7448/IAS.20.6.22253
Oral abstracts of the 21st International AIDS ConferenceCited by: 5
Author(s):
Software Mentions: 3
Published: over 7 years ago
10.3390/v12020149
Emerging PCR-Based Techniques to Study HIV-1 Reservoir PersistenceCited by: 18
Author(s): Laurens Lambrechts, Basiel Cole, Sofie Rutsaert, Wim Trypsteen, Linos Vandekerckhove
Software Mentions: 2
Published: almost 5 years ago
10.3390/v11040323
Interpreting Viral Deep Sequencing Data with GLUECited by: 16
Author(s): Joshua B. Singer, Emma C. Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan, Ana da Silva Filipe, L. Tong, Carmen F. Manso, Robert J. Gifford, David L. Robertson, Eleanor Barnes, Azim Ansari, Jean L. Mbisa, David F. Bibby, Daniel Bradshaw, David A. Smith
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.12129
VGEA: an RNA viral assembly toolkitCited by: 1
Author(s): Paul E. Oluniyi, Fehintola V. Ajogbasile, Judith Oguzie, Jessica N. Uwanibe, Adeyemi T. Kayode, Anise N. Happi, Alphonsus Ugwu, Testimony Olumade, Olusola A. Ogunsanya, Philomena Eromon, Onikepe A. Folarin, Simon D. W. Frost, Jonathan L. Heeney, Christian Happi
Software Mentions: 2
Published: about 3 years ago
10.1128/JCM.00382-20
A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income SettingsCited by: 28
Author(s): David Bonsall, Tanya Golubchik, Mariateresa de Cesare, Mohammed Limbada, Barry Kosloff, George MacIntyre-Cockett, Matthew Hall, Chris Wymant, Azim Ansari, Lucie Abeler-Dörner, Ab Schaap, Anthony Brown, Eleanor Barnes, Estelle Piwowar‐Manning, Susan H. Eshleman, Ethan Wilson, Lynda Emel, Richard Hayes, Sarah Fidler, Helen Ayles, Rory Bowden, Christophe Fraser, Hptn Study Team
Software Mentions: 1
Published: about 4 years ago
10.1126/science.abg0821
SARS-CoV-2 within-host diversity and transmissionCited by: 246
Author(s): Katrina A. Lythgoe, Matthew Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes, Monique Andersson, Newton O. Otecko, Emma L. Wise, Nathan Moore, Jessica Lynch, Stephen P. Kidd, Nicholas Cortes, Matilde Mori, Rebecca Williams, Gabrielle Vernet, Anita Justice, Angie Green, Samuel M. Nicholls, Azim Ansari, Lucie Abeler-Dörner, Catrin E. Moore, Timothy E. A. Peto, David W Eyre, R. H. Shaw, Peter Simmonds, David Buck, John A. Todd, Thomas R. Connor, Shirin Ashraf, Ana da Silva Filipe, James G. Shepherd, Emma C. Thomson, David Bonsall, Christophe Fraser, Tanya Golubchik
Software Mentions: 1
Published: over 3 years ago
10.1016/S0140-6736(21)00628-0
Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trialCited by: 520
Author(s): Katherine R. W. Emary, Tanya Golubchik, Parvinder K. Aley, Cristina V. Ariani, Brian Angus, Sagida Bibi, Beth Blane, David Bonsall, Paola Cicconi, Sue Charlton, Elizabeth A. Clutterbuck, Andrea Collins, Tony Cox, Thomas C. Darton, Christina Dold, Alexander D. Douglas, Christopher Duncan, Katie Ewer, Amy Flaxman, Saul N Faust, Daniela M. Ferreira, Luzhao Feng, Adam Finn, Pedro M. Folegatti, Michelle Fuskova, Eva Galiza, Anna Goodman, Catherine Green, Christopher Green, Melanie Greenland, Bassam Hallis, Paul T Heath, Jodie Hay, Helen Hill, Daniel Jenkin, Simon Kerridge, Rajeka Lazarus, Vincenzo Libri, Patrick Lillie, Catherine Ludden, Natalie Marchevsky, Angela M. Minassian, Alastair McGregor, Yama F Mujadidi, Daniel J. Phillips, Emma Plested, Katrina M Pollock, Hannah Robinson, Darren Smith, Rinn Song, Matthew D. Snape, R. Sutherland, Emma C. Thomson, Mark Toshner, David P. J. Turner, Johan Vekemans, Tonya Villafana, Christopher J. Williams, Adrian V. S. Hill, Teresa Lambe, Sarah C. Gilbert, Merryn Voysey, Maheshi Ramasamy, Andrew J. Pollard
Software Mentions: 1
Published: over 3 years ago