Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: shiny

https://packages.ecosyste.ms/registries/pypi.org/packages/shiny

A web development framework for Python.
19 versions
Latest release: about 1 year ago
11 dependent packages
16,948 downloads last month

Papers Mentioning shiny 127

OptisampleTM: Open web-based application to optimize sampling strategies for active surveillance activities at the herd level illustrated using Porcine Respiratory Reproductive Syndrome (PRRS)
Cited by: 2
Author(s): Anna Alba, Robert E. Morrison, Ann Cheeran, Albert Rovira, Julio Álvarez, Andrés Pérez
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0209929

Rift Valley fever: An open-source transmission dynamics simulation model
Cited by: 5
Author(s): Robert D. Sumaye, Famke Jansen, Dirk Berkvens, Bernard De Baets, Eveline Geubels, Étienne Thiry, Meryam Krit
Software Mentions: 3
Published: almost 6 years ago

10.3389/fnhum.2020.584236

Development and Validation of a Dynamic Nomogram to Predict the Risk of Neonatal White Matter Damage
Cited by: 1
Author(s): Wenjun Cao, Chenghan Luo, Mengyuan Lei, Min Shen, Wenqian Ding, Mengmeng Wang, Min Seob Song, Jian Ge, Qian Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0174384

Temperature and food quantity effects on the harpacticoid copepod Nitocra spinipes: Combining in vivo bioassays with population modeling
Cited by: 13
Author(s): Josef Koch, Thuy T. Bui, Elin Lundström Belleza, Markus Brinkmann, Henner Hollert, Magnus Breitholtz
Software Mentions: 3
Published: over 7 years ago

10.3389/fpsyg.2017.02110

Proposal for a Five-Step Method to Elicit Expert Judgment
Cited by: 23
Author(s): Duco Veen, Diederick Stoel, Mariëlle Zondervan‐Zwijnenburg, Rens van de Schoot
Software Mentions: 3
Published: almost 7 years ago

10.12688/wellcomeopenres.10069.1

Accurate clinical detection of exon copy number variants in a targeted NGS panel using DECoN
Cited by: 71
Author(s): Anna Fowler, Shazia Mahamdallie, Elise Ruark, Sheila Seal, Emma Ramsay, Matthew Clarke, Imran Uddin, Harriet Wylie, Ann Strydom, Gerton Lunter, Nazneen Rahman
Software Mentions: 3
Published: about 8 years ago

10.1186/s12885-020-06756-x

Sequential analysis of transcript expression patterns improves survival prediction in multiple cancers
Cited by: 5
Author(s): Jordan A. Mandel, Raghunandan Avula, Edward V. Prochownik
Software Mentions: 3
Published: over 4 years ago

10.3389/fpsyg.2015.00342

When seeing is learning: dynamic and interactive visualizations to teach statistical concepts
Cited by: 3
Author(s): David Moreau
Software Mentions: 3
Published: over 9 years ago

10.3390/cells10040751

DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs
Cited by: 0
Author(s): Piyush More, Sweta Talyan, Jean-Fred Fontaine, Enrique M. Muro, Miguel A. Andrade‐Navarro
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0174180

Dual energy X-ray absorptiometry body composition reference values of limbs and trunk from NHANES 1999–2004 with additional visualization methods
Cited by: 35
Author(s): Benjamin Hinton, Bo Fan, Bennett K. Ng, John Shepherd
Software Mentions: 3
Published: over 7 years ago

10.1186/1751-0473-9-11

Methylation plotter: a web tool for dynamic visualization of DNA methylation data
Cited by: 49
Author(s): Izaskun Mallona, Anna Díez-Villanueva, Miguel A. Peinado
Software Mentions: 3
Published: over 10 years ago

10.1093/jac/dkab160

Application of the hollow fibre infection model (HFIM) in antimicrobial development: a systematic review and recommendations of reporting
Cited by: 16
Author(s): Zahra Sadouki, Timothy D. McHugh, Rob E. Aarnoutse, Julio Ortiz Canseco, Christopher A Darlow, William Hope, Jakko van Ingen, Christopher Longshaw, Davide Manissero, Andrew Mead, Ludovic Pelligand, Lynette Phee, John Readman, Mike Marvin Ruth, Joseph F. Standing, Neil Stone, Emmanuel Wey, Frank Kloprogge
Software Mentions: 3
Published: over 3 years ago

10.7150/jca.46563

A Predictive Nomogram for Early Death of Metastatic Gastric Cancer: A Retrospective Study in the SEER Database and China
Cited by: 32
Author(s): Ying Zhu, Xiongfeng Fang, Lanqing Wang, Tao Zhang, Dandan Yu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12882-016-0430-4

Acute kidney injury as an independent risk factor for unplanned 90-day hospital readmissions
Cited by: 46
Author(s): Simon Sawhney, Angharad Marks, Nick Fluck, David J. McLernon, Gordon Prescott, Corri Black
Software Mentions: 3
Published: almost 8 years ago

10.3389/fnmol.2018.00062

Brain-Derived Neurotrophic Factor Elevates Activating Transcription Factor 4 (ATF4) in Neurons and Promotes ATF4-Dependent Induction of Sesn2
Cited by: 13
Author(s): Jin Liu, Fatou Amar, Carlo Corona, Raphaella W. L. So, Stuart Andrews, Péter L. Nagy, Michael L. Shelanski, Lloyd A. Greene
Software Mentions: 2
Published: almost 7 years ago

10.1155/2020/7261047

Nomogram-Based Prediction of the Risk of Diabetic Retinopathy: A Retrospective Study
Cited by: 22
Author(s): Ruohui Mo, Rong Shi, HU Yuhong, Fan Hu
Software Mentions: 2
Published: over 4 years ago

10.3897/BDJ.4.e7606

The Meristogram: a neglected tool for acanthocephalan systematics
Cited by: 0
Author(s): Matthew T. Wayland
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40644-019-0244-2

The Proceedings of the 19th International Cancer Imaging Society Meeting and Annual Teaching Course
Cited by: 0
Author(s):
Software Mentions: 2
Published: over 5 years ago

10.1038/s41597-021-00978-9

resistancebank.org, an open-access repository for surveys of antimicrobial resistance in animals
Cited by: 2
Author(s): Nicola G. Criscuolo, João Pires, Zhao Cheng, Thomas P. Van Boeckel
Software Mentions: 2
Published: over 3 years ago

10.1186/s12891-021-04715-6

Development and validation of a novel predictive model and web calculator for evaluating transfusion risk after spinal fusion for spinal tuberculosis: a retrospective cohort study
Cited by: 10
Author(s): Shengtao Dong, Wenle Li, Zhi-Ri Tang, Haosheng Wang, Pei Hao, Bo Yuan
Software Mentions: 2
Published: about 3 years ago

10.3389/fpsyg.2021.699831

A Practical Tool for Family Assessment Based on the Social Relations Model
Cited by: 1
Author(s): Tom Loeys, Marieke Fonteyn, Justine Loncke
Software Mentions: 2
Published: over 3 years ago

10.3897/BDJ.3.e5361

Displaying bias in sampling effort of data accessed from biodiversity databases using ignorance maps
Cited by: 55
Author(s): Alejandro Ruete
Software Mentions: 2
Published: over 9 years ago

10.3389/fendo.2021.734900

Web-Based Ultrasonic Nomogram Predicts Preoperative Central Lymph Node Metastasis of cN0 Papillary Thyroid Microcarcinoma
Cited by: 7
Author(s): Chunwang Huang, Shan Cong, Shiyao Shang, Manli Wang, Huan Zheng, Suqing Wu, Xiuyan An, Liang Zhao-qiu, Bo Zhang
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-020-3494-x

MEPHAS: an interactive graphical user interface for medical and pharmaceutical statistical analysis with R and Shiny
Cited by: 14
Author(s): Yi Zhou, Siu-wai Leung, Shosuke Mizutani, Tatsuya Takagi, Yinbao Tian
Software Mentions: 2
Published: over 4 years ago

10.1177/1740774519890146

Designing and evaluating dose-escalation studies made easy: The MoDEsT web app
Cited by: 8
Author(s): Philip Pallmann, Fang Wan, Adrian P. Mander, Graham Wheeler, Christina Yap, Sally Clive, Lisa V. Hampson, Thomas Jaki
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0239695

A web visualization tool using T cell subsets as the predictor to evaluate COVID-19 patient's severity
Cited by: 6
Author(s): Qibin Liu, Xuemin Fang, Shinichi Tokuno, Ung‐il Chung, Xianxiang Chen, Xiyong Dai, Xiaoyu Liu, Feng Xu, Bing Wang, Peng Peng
Software Mentions: 2
Published: about 4 years ago