Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: seqtk
https://packages.ecosyste.ms/registries/pypi.org/packages/seqtk
seqtk provides various tools for Sequence.
6 versions
Latest release: almost 3 years ago
1 dependent package
7,762 downloads last month
Papers Mentioning seqtk 213
10.3389/fgene.2020.601870
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP)Cited by: 3
Author(s): Sean Buono, Reagan Kelly, Nadav Topaz, Adam C. Retchless, Hideky Silva, Alexander Chen, Edward Ramos, Gregory Doho, Agha N. Khan, Margaret Okomo-Adhiambo, Fang Hu, Daya Marasini, Xin Wang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2020.00924
DINTD: Detection and Inference of Tandem Duplications From Short Sequencing ReadsCited by: 5
Author(s): Jinxin Dong, Minyong Qi, Shaoqiang Wang, Xiguo Yuan
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.02497-18
Virus Genomes from Deep Sea Sediments Expand the Ocean Megavirome and Support Independent Origins of Viral GigantismCited by: 75
Author(s): Disa Bäckström, Natalya Yutin, Steffen Leth Jørgensen, Jennah E. Dharamshi, Félix Homa, Katarzyna Zaremba-Niedwiedzka, Anja Spang, Yuri I. Wolf, Eugene V. Koonin, Thijs J. G. Ettema
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.665927
Missing Nurse Bees—Early Transcriptomic Switch From Nurse Bee to Forager Induced by Sublethal ImidaclopridCited by: 2
Author(s): Yun‐Ru Chen, David T.W. Tzeng, Chieh Ting, Pei-Shou Hsu, Tzu-Hsien Wu, Silin Zhong, En‐Cheng Yang
Software Mentions: 1
Published: over 3 years ago
10.1128/genomeA.01246-16
Draft Genome Sequence for the Type Strain Vulcanibacillus modesticaldus BR, a Strictly Anaerobic, Moderately Thermophilic, and Nitrate-Reducing Bacterium Isolated from Deep-Sea Hydrothermal Vents of the Mid-Atlantic RidgeCited by: 4
Author(s): Christopher A. Abin, James T. Hollibaugh
Software Mentions: 1
Published: almost 8 years ago
10.3389/fgene.2021.627128
Inter-Individual Diversity Scaling Analysis of the Human Virome With Classic Diversity-Area Relationship (DAR) ModelingCited by: 3
Author(s): Wanmeng Xiao, Zhanshan Sam
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2019.01355
Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional AtlasCited by: 23
Author(s): Kim M. Summers, Stephen J. Bush, Chunlei Wu, Andrew I. Su, Charity Muriuki, Emily L. Clark, Heather Finlayson, Lél Eöry, Lindsey Waddell, Richard Talbot, Alan Archibald, David Hume
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-018-4491-6
Systematic comparison of small RNA library preparation protocols for next-generation sequencingCited by: 87
Author(s): Cloelia Dard-Dascot, Delphine Naquin, Yves d’Aubenton-Carafa, Karine Alix, Claude Thermes, Erwin van Dijk
Software Mentions: 1
Published: almost 7 years ago
10.1093/biomethods/bpaa014
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid BarcodingCited by: 160
Author(s): Nikki E. Freed, Markéta Vlková, Muhammad B. Faisal, Olin K. Silander
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13059-021-02297-z
Simplitigs as an efficient and scalable representation of de Bruijn graphsCited by: 21
Author(s): Karel Břinda, Michael Baym, Grégory Kucherov
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2017.00211
The Role for the Small Cryptic Plasmids As Moldable Vectors for Genetic Innovation in Aeromonas salmonicida subsp. salmonicidaCited by: 22
Author(s): Sabrina A. Attéré, Antony T. Vincent, Mégane Paccaud, Michel Frenette, Steve J. Charette
Software Mentions: 1
Published: almost 7 years ago
10.3389/fgene.2021.661417
The Role of Satellite DNAs in Genome Architecture and Sex Chromosome Evolution in Crambidae MothsCited by: 20
Author(s): Diogo Cavalcanti Cabral-de-Mello, Magda Zrzavá, Svatava Kubı́čková, Pedro Rendón, František Marec
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2020.00661
Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian MacrophagesCited by: 26
Author(s): Stephen J. Bush, Mary E. B. McCulloch, Zofia M. Lisowski, Charity Muriuki, Emily L. Clark, Rachel Young, Clare Pridans, James Prendergast, Kim M. Summers, David Hume
Software Mentions: 1
Published: over 4 years ago