Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: scripts

https://packages.ecosyste.ms/registries/pypi.org/packages/scripts

Various shell scripts
3 versions
Latest release: about 9 years ago
24,889 downloads last month

Papers Mentioning scripts 315

10.1038/s41598-017-16812-5
Transcriptome Analysis of Two Species of Jute in Response to Polyethylene Glycol (PEG)- induced Drought Stress
Cited by: 40
Author(s): Zemao Yang, Zhigang Dai, Ruike Lu, Bing-Fei Wu, Qing Tang, Ying Xu, Chaohua Cheng, Jianguang Su
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-22817-5
Demonstration of the potential of environmental DNA as a tool for the detection of avian species
Cited by: 59
Author(s): Masayuki Ushio, Koichi Murata, Tetsuya Sadõ, Isao Nishiumi, Masamichi Takeshita, Wataru Iwasaki, Masaki Miya
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-25891-x
Sensory representation of an auditory cued tactile stimulus in the posterior parietal cortex of the mouse
Cited by: 16
Author(s): Hemanth Mohan, Yasir Gallero‐Salas, Stefano Carta, João Sacramento, Balazs Laurenczy, Lazar T. Sumanovski, De Kock, Fritjof Helmchen, Shankar Sachidhanandam
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-45184-1
Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen
Cited by: 23
Author(s): Renesh Bedre, Sonia Irigoyen, Patrícia Dayane Carvalho Schaker, Cláudia Barros Monteiro-Vitorello, Jorge A. da Silva, Kranthi K. Mandadi
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-56469-w
Local adaptation of a dominant coastal tree to freshwater availability and solar radiation suggested by genomic and ecophysiological approaches
Cited by: 15
Author(s): Mariana Vargas Cruz, Gustavo Maruyama Mori, Caroline Signori‐Müller, Carla Cristina da Silva, Dong Ha Oh, Maheshi Dassanayake, Maria Imaculada Zucchi, Rafael S. Oliveira, Anete Pereira de Souza
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-65135-5
Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments
Cited by: 35
Author(s): Lukas Pfeifer, Thomas Shafee, Kim L. Johnson, Antony Bacic, Birgit Classen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-86811-0
A scenario modeling pipeline for COVID-19 emergency planning
Cited by: 28
Author(s): Joseph C. Lemaitre, Kyra H. Grantz, Joshua Kaminsky, Hannah R. Meredith, Shaun Truelove, Stephen A. Lauer, Lindsay T Keegan, Sam Shah, Josh Wills, Kathryn Kaminsky, Javier Perez-Saez, Justin Lessler, Elizabeth C. Lee
Software Mentions: 2
Published: over 3 years ago
10.3390/s19245500
Geometrical Matching of SAR and Optical Images Utilizing ASIFT Features for SAR-based Navigation Aided Systems
Cited by: 14
Author(s): Jakub Markiewicz, Karol Abratkiewicz, Artur Gromek, W. Ostrowski, Piotr Samczyński, Damian Gromek
Software Mentions: 2
Published: almost 5 years ago
10.3390/s20185439
Addressing the Security Gap in IoT: Towards an IoT Cyber Range
Cited by: 10
Author(s): Oliver Nock, Jonathan M. Starkey, Constantinos Marios Angelopoulos
Software Mentions: 2
Published: about 4 years ago
10.1093/synbio/ysz026
Rapid generation of sequence-diverse terminator libraries and their parameterization using quantitative Term-Seq
Cited by: 11
Author(s): Andrew J. Hudson, Hans-Joachim Wieden
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.27652
Macrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor
Cited by: 24
Author(s): Naresh Singh Redhu, Vasudevan Bakthavatchalu, Evan Conaway, Dror S. Shouval, Amy M. Tsou, Jeremy A. Goettel, Amlan Biswas, Chuanwu Wang, Michael Field, Werner Müller, André Bleich, Ning Li, Georg K. Gerber, Lynn Bry, James G. Fox, Scott B. Snapper, Bruce H. Horwitz
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.13403
Mixed-mode oscillations and population bursting in the pre-Bötzinger complex
Cited by: 38
Author(s): Bartholomew J. Bacak, Taegyo Kim, Jeffrey C. Smith, Jonathan E. Rubin, Ilya A. Rybak
Software Mentions: 2
Published: over 8 years ago
10.7554/eLife.15200
Rewiring MAP kinases in Saccharomyces cerevisiae to regulate novel targets through ubiquitination
Cited by: 11
Author(s): Benjamin Groves, Arjun Khakhar, Cory M. Nadel, Richard G. Gardner, Georg Seelig
Software Mentions: 2
Published: over 8 years ago
10.7554/eLife.46793
Genetic interactions of G-quadruplexes in humans
Cited by: 83
Author(s): Katherine G. Zyner, Darcie S Mulhearn, Santosh Adhikari, Sergio Martínez Cuesta, Marco Di Antonio, Nicolas Erard, Gregory J. Hannon, David Tannahill, Shankar Balasubramanian
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21062162
Bulked Segregant Analysis Coupled with Whole-Genome Sequencing (BSA-Seq) Mapping Identifies a Novel pi21 Haplotype Conferring Basal Resistance to Rice Blast Disease
Cited by: 21
Author(s): Tingmin Liang, Wenchao Chi, Likun Huang, Mengyu Qu, Shubiao Zhang, Ziqiang Chen, Zaijie Chen, Dagang Tian, Gui Shuang Ying, Xiaofeng Chen, Zonghua Wang, Weiqi Tang, Songbiao Chen
Software Mentions: 2
Published: over 4 years ago
10.1098/rsob.200050
Disruption of TFIIH activities generates a stress gene expression response and reveals possible new targets against cancer
Cited by: 3
Author(s): Maritere Urióstegui-Arcos, Rodrigo Aguayo‐Ortiz, María del Pilar Valencia-Morales, Erika Melchy-Pérez, Yvonne Rosenstein, Laura Domı́nguez, Mario Zurita
Software Mentions: 2
Published: over 4 years ago
10.1107/S1600577518007518
Fully automated beamline control system for XAS beamlines
Cited by: 5
Author(s): Stefan Mangold
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0103590
Small RNA Profile in Moso Bamboo Root and Leaf Obtained by High Definition Adapters
Cited by: 14
Author(s): Ping Xu, Irina Mohorianu, Li Yang, Hansheng Zhao, Zhimin Gao, Tamás Dalmay
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0012253
Genomic Characterization of Campylobacter jejuni Strain M1
Cited by: 91
Author(s): Carsten Friis, Trudy M. Wassenaar, Muhammad Asif Javed, Lars Snipen, Karin Lagesen, Peter F. Hallin, Diane G. Newell, M. Toszeghy, Anne Ridley, Georgina Manning, David W. Ussery
Software Mentions: 1
Published: about 14 years ago
10.3390/genes9020071
Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis)
Cited by: 45
Author(s): Zhenghai Mo, Gang Feng, Wenchuan Su, Zhuangzhuang Liu, Fei Peng
Software Mentions: 1
Published: almost 7 years ago
10.3390/genes9110523
Satellite DNAs Unveil Clues about the Ancestry and Composition of B Chromosomes in Three Grasshopper Species
Cited by: 21
Author(s): Diogo Milani, Vanessa Bellini Bardella, Ana Beatriz Stein Machado Ferretti, Octavio M. Palacios-Gimenez, Adriana de Souza Melo, Rita C. Moura, Vilma Loreto, Ho‐Jun Song, Diogo Cavalcanti Cabral-de-Mello
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0004059
Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation
Cited by: 51
Author(s): Alessandro de Mello Varani, Rangel Celso Souza, Hidehiko Nakaya, Wanessa Cristina Lima, Luiz Gonzaga Paula de Almeida, Elliot Watanabe Kitajima, Jianchi Chen, Edwin L. Civerolo, Ana Tereza Ribeiro de Vasconcelos, Marie‐Anne Van Sluys
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0129099
A Systematic Assessment of Accuracy in Detecting Somatic Mosaic Variants by Deep Amplicon Sequencing: Application to NF2 Gene
Cited by: 14
Author(s): Elisa Contini, Irene Paganini, Roberta Sestini, Luisa Candita, Gabriele Lorenzo Capone, Lorenzo Barbetti, Serena Falconi, Sabrina Frusconi, Irene Giotti, Costanza Giuliani, Francesca Torricelli, Matteo Benelli, Laura Papi
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0022431
The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing
Cited by: 7
Author(s): P. Douglas Renfrew, Gabrielle Campbell, Charlie E. M. Strauss, Richard Bonneau
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0202495
Differential changes in the onset of spring across US National Wildlife Refuges and North American migratory bird flyways
Cited by: 11
Author(s): Eric K. Waller, Theresa M. Crimmins, Jessica J. Walker, Erin E. Posthumus, Jake F. Weltzin
Software Mentions: 1
Published: about 6 years ago
10.3390/ijerph18136809
The Premium of Public Perceived Greenery: A Framework Using Multiscale GWR and Deep Learning
Cited by: 4
Author(s): Yonglin Zhang, Fu Xiao, Chencan Lv, Shanlin Li
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0021289
Identification of a Highly Antigenic Linear B Cell Epitope within Plasmodium vivax Apical Membrane Antigen 1 (AMA-1)
Cited by: 39
Author(s): Lilian Lacerda Bueno, Francisco Pereira Lobo, Cristiane Guimarães Morais, Luíza Carvalho Mourão, Ricardo Andrez Machado-de-Ávila, Irene S. Soares, Cor Jésus Fernandes Fontes, Marcus Vinícius Guimarães Lacerda, Carlos Chávez Olórtegui, Daniella Castanheira Bartholomeu, Ricardo Toshio Fujiwara, Érika Martins Braga
Software Mentions: 1
Published: over 13 years ago
10.1007/s11357-020-00275-0
Longitudinal trends in master track and field performance throughout the aging process: 83,209 results from Sweden in 16 athletics disciplines
Cited by: 14
Author(s): Bergita Ganse, Anthony Kleerekoper, Matthias Knobe, Frank Hildebrand, Hans Degens
Software Mentions: 1
Published: about 4 years ago
10.1523/JNEUROSCI.2895-19.2020
RLN3/RXFP3 Signaling in the PVN Inhibits Magnocellular Neurons via M-like Current Activation and Contributes to Binge Eating Behavior
Cited by: 19
Author(s): Alan Kania, Agata Szlaga, Patryk Sambak, Anna Guguła, Ewa Błasiak, Maria Vittoria Micioni Di Bonaventura, Mohammad Akhter Hossain, Carlo Cifani, Grzegorz Hess, Andrew L. Gundlach, Anna Błasiak
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0133132
A Murine Hypertrophic Cardiomyopathy Model: The DBA/2J Strain
Cited by: 22
Author(s): Wenyuan Zhao, Tian Zhao, Yuanjian Chen, Fengbo Zhao, Qun Gu, Robert W. Williams, Syamal K. Bhattacharya, Lu Lu, Yao Sun
Software Mentions: 1
Published: over 9 years ago
10.1111/gwat.12925
Pastas: Open Source Software for the Analysis of Groundwater Time Series
Cited by: 33
Author(s): Raoul Collenteur, Mark Bakker, Ruben Caljé, Stijn Klop, Frans Schaars
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0121157
Bees for Development: Brazilian Survey Reveals How to Optimize Stingless Beekeeping
Cited by: 117
Author(s): Rodolfo Jaffé, Nathaniel S. Pope, Alysson Massote Carvalho, Ulysses Madureira Maia, Betina Blochtein, Carlos Alfredo Lopes de Carvalho, Gislene Almeida Carvalho‐Zilse, Breno Magalhães Freitas, Cristiano Menezes, M. de F. Ribeiro, G. C. Venturieri, Vera Lúcia Imperatriz-Fonseca
Software Mentions: 1
Published: over 9 years ago
10.1002/hbm.25322
New insights on the ventral attention network: Active suppression and involuntary recruitment during a bimodal task
Cited by: 10
Author(s): Rodolfo Solís-Vivanco, Ole Jensen, Mathilde Bonnefond
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0063035
Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain
Cited by: 3
Author(s): Brian O’Farrell, John A. H. Benzie, P. McGinnity, Elvira de Eyto, Eileen Dillane, Jamie Coughlan, T. Cross
Software Mentions: 1
Published: over 11 years ago
10.18632/oncotarget.16791
Multiple-gene panel analysis in a case series of 255 women with hereditary breast and ovarian cancer
Cited by: 62
Author(s): Gianluca Tedaldi, Michela Tebaldi, Valentina Zampiga, Rita Danesi, Valentina Arcangeli, Mila Ravegnani, Ilaria Cangini, Francesca Pirini, Elisabetta Petracci, Andrea Rocca, Fabio Falcini, Dino Amadori, Daniele Calistri
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0097497
RNA Sequencing Analysis of the Gametophyte Transcriptome from the Liverwort, Marchantia polymorpha
Cited by: 22
Author(s): Niharika Sharma, Chol‐Hee Jung, Prem L. Bhalla, Mohan B. Singh
Software Mentions: 1
Published: over 10 years ago
10.1074/jbc.M113.500314
Protein Kinase PKN1 Represses Wnt/β-Catenin Signaling in Human Melanoma Cells
Cited by: 29
Author(s): Richard G. James, Katherine A. Bosch, Rima M. Kulikauskas, Peter Yang, Nick C. Robin, Rachel A. Toroni, Travis L. Biechele, Jason D. Berndt, Priska D. von Haller, Jimmy K. Eng, Alejandro Wolf-Yadlin, Andy J. Chien, Randall T. Moon
Software Mentions: 1
Published: about 11 years ago
10.1177/0271678X18780602
A critical role for the ATP-sensitive potassium channel subunit K<sub>IR</sub>6.1 in the control of cerebral blood flow
Cited by: 24
Author(s): Patrick S. Hosford, Isabel N. Christie, Arun Niranjan, Qadeer Aziz, Naomi Anderson, Richard Ang, Mark F. Lythgoe, Jack A. Wells, Andrew Tinker, Alexander V. Gourine
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-018-4908-2
STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus
Cited by: 24
Author(s): Margarida Espada, Sebastian Eves‐van den Akker, Tom Maier, Paramasivan Vijayapalani, Thomas J. Baum, Manuel Mota, John T. Jones
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pgen.1004236
CYP6 P450 Enzymes and ACE-1 Duplication Produce Extreme and Multiple Insecticide Resistance in the Malaria Mosquito Anopheles gambiae
Cited by: 236
Author(s): Constant Edi, Luc Djogbénou, Adam M. Jenkins, Kimberly Regna, Marc A. T. Muskavitch, Rodolphe Poupardin, Christopher M. Jones, John Essandoh, Guillaume Koffivi Ketoh, Mark J. I. Paine, Benjamin G. Koudou, Martin J. Donnelly, Hilary Ranson, David Weetman
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pgen.1007875
Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model
Cited by: 7
Author(s): Yuan Lu, Mikki Boswell, William Boswell, Susanne Kneitz, Barbara Klotz, Markita Savage, Raquel Y. Salinas, R. William Marks, Janine Regneri, John H. Postlethwait, Wesley C. Warren, Manfred Schartl, Ronald B. Walter
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009308
Physiological and immunological changes in the brain associated with lethal eastern equine encephalitis virus in macaques
Cited by: 11
Author(s): Joseph R. Albe, Henry Ma, Theron Gilliland, Cynthia M. McMillen, Christina L. Gardner, Devin A. Boyles, Emily L. Cottle, Matthew D. Dunn, Jeneveve D. Lundy, Katherine J. O’Malley, Noah Salama, Aaron W. Walters, Ivona Pandrea, Tobias Teichert, William B. Klimstra, Douglas S. Reed, Amy L. Hartman
Software Mentions: 1
Published: almost 4 years ago
10.1098/rspb.2018.0991
Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck
Cited by: 19
Author(s): Patrik G. Flammer, Simon Dellicour, Stephen G. Preston, Dirk Rieger, Sylvia Warren, Cedric Kai Wei Tan, Rebecca Nicholson, Renáta Přichystalová, Niels Bleicher, Joachim Wahl, Nuno Rodrigues Faria, Oliver G. Pybus, Mark Pollard, Adrian L. Smith
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pcbi.1002589
Efficient Reverse-Engineering of a Developmental Gene Regulatory Network
Cited by: 83
Author(s): Anton Crombach, Karl R. Wotton, Damjan Cicin-Sain, Maksat Ashyraliyev, Johannes Jaeger
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pcbi.1003217
Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells
Cited by: 22
Author(s): Dipak Barua, William S. Hlavacek
Software Mentions: 1
Published: about 11 years ago
10.1098/rsos.201788
Ocean-wide genomic variation in Gray's beaked whales, <i>Mesoplodon grayi</i>
Cited by: 11
Author(s): Michael V. Westbury, K. F. Thompson, Marie Louis, Andrea A. Cabrera, Mikkel Skovrind, José Alfredo Samaniego Castruita, Rochelle Constantine, Jamie R. Stevens, Eline D. Lorenzen
Software Mentions: 1
Published: over 3 years ago
10.3390/pharmaceutics12100969
Overcoming the Solubility Barrier of Ibuprofen by the Rational Process Design of a Nanocrystal Formulation
Cited by: 8
Author(s): Andreas Ouranidis, Nikos Gkampelis, Elisavet Vardaka, Anna Karagianni, Dimitrios Tsiptsios, Ioannis Nikolakakis, Kyriakos Kachrimanis
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.3715
Candidate genes for shell colour polymorphism in<i>Cepaea nemoralis</i>
Cited by: 18
Author(s): Jesse Kerkvliet, Tjalf de Boer, Menno Schilthuizen, Ken Kraaijeveld
Software Mentions: 1
Published: about 7 years ago
10.1038/srep15795
Evolutionarily Conserved Sequence Features Regulate the Formation of the FG Network at the Center of the Nuclear Pore Complex
Cited by: 21
Author(s): Mohaddeseh Peyro, Mohammad Soheilypour, B.L. Lee, Mohammad R. K. Mofrad
Software Mentions: 1
Published: about 9 years ago
10.1038/srep23765
Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice
Cited by: 19
Author(s): Saurabh Badoni, Satyajit Das, Yogesh K. Sayal, S. Gopalakrishnan, Ashok Kumar Singh, Atmakuri Ramakrishna Rao, Pinky Agarwal, Swarup K. Parida, Akhilesh K. Tyagi
Software Mentions: 1
Published: over 8 years ago
10.1038/srep24896
Substantial and robust changes in microRNA transcriptome support postnatal development of the hypothalamus in rat
Cited by: 17
Author(s): Soraya Doubi-Kadmiri, Charlotte Benoît, Xavier Benigni, Guillaume Beaumont, Claire-Marie Vacher, Mohammed Taouis, Anne Baroin-Tourancheau, Laurence Amar
Software Mentions: 1
Published: over 8 years ago
10.1523/ENEURO.0269-18.2018
As Soon as You Taste It: Evidence for Sequential and Parallel Processing of Gustatory Information
Cited by: 19
Author(s): Raphael Wallroth, Kathrin Ohla
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.29594
The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism
Cited by: 60
Author(s): C. Alisha Quandt, Denis Beaudet, Daniele Corsaro, Julia Walochnik, R. Michel, Nicolas Corradi, Timothy Y. James
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2164-12-371
Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila
Cited by: 54
Author(s): Sergei Ryazansky, В. А. Гвоздев, Eugène Berezikov
Software Mentions: 1
Published: over 13 years ago
10.7717/peerj.3193
Transcriptome sequencing and SNP detection in <i>Phoebe chekiangensis</i>
Cited by: 6
Author(s): Bing He, Yingang Li, Zhouxian Ni, Xu Li
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-11-393
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae
Cited by: 76
Author(s): Michael Kube, Alexander Michael Migdoll, I. Gehring, Katja Heitmann, Yvonne Mayer, Heiner Kuhl, Florian Knaust, Klaus Geider, Richard Reinhardt
Software Mentions: 1
Published: almost 15 years ago
10.1186/s12864-018-4566-4
Identification and characterization of microRNAs involved in ascidian larval metamorphosis
Cited by: 12
Author(s): Xiaoming Zhang, Xiaozhuo Liu, Xianhui Qin, Jiankai Wei, Haiyan Yu, Bo Dong
Software Mentions: 1
Published: over 6 years ago
10.1523/ENEURO.0297-17.2017
Neuronal Intrinsic Physiology Changes During Development of a Learned Behavior
Cited by: 17
Author(s): Matthew T. Ross, Diana Flores, Richard Bertram, Frank Johnson, Richard L. Hyson
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-018-24391-2
Design and optimization of a compact laser-driven proton beamline
Cited by: 14
Author(s): M. Scisciò, M. Migliorati, L. Palumbo, P. Antici
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms20133287
QTL Analysis of Resistance to High-Intensity UV-B Irradiation in Soybean (Glycine max [L.] Merr.)
Cited by: 8
Author(s): Min Young Yoon, Moon Young Kim, Jung Min Ha, Taeyoung Lee, Kyung Do Kim, Suk-Ha Lee
Software Mentions: 1
Published: over 5 years ago
10.1186/s13071-020-04442-2
De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation
Cited by: 7
Author(s): Ercha Hu, Meng Yuan, Ying Ma, Ruiqi Song, Zhengxiang Hu, Min Li, Yunwei Hao, Xinli Fan, Liting Wei, Shilong Fan, Songqin Chen, Xuejie Zhai, Yongchang Li, Wei Zhang, Yang Zhang, Qingyong Guo, Bayin Chahan
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-018-30958-w
Visual Processing by Calretinin Expressing Inhibitory Neurons in Mouse Primary Visual Cortex
Cited by: 12
Author(s): Daniela Camillo, Mehran Ahmadlou, M. Hadi Saiepour, Maryam Yasaminshirazi, Christiaan N. Levelt, J. Alexander Heimel
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-019-39762-6
Impact of Polymerase Fidelity on Background Error Rates in Next-Generation Sequencing with Unique Molecular Identifiers/Barcodes
Cited by: 33
Author(s): Stefan Filges, Emiko Yamada, Anders Ståhlberg, Tony E. Godfrey
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-14-86
Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination
Cited by: 29
Author(s): Carina F. Mugal, Benoît Nabholz, Hans Ellegren
Software Mentions: 1
Published: almost 12 years ago
10.1111/acel.13375
Microglial MT1 activation inhibits LPS‐induced neuroinflammation via regulation of metabolic reprogramming
Cited by: 37
Author(s): Chao Gu, Fen Wang, Yuting Zhang, Shi‐Zhuang Wei, Junyi Liu, Hongyang Sun, Guanghui Wang, Chunfeng Liu
Software Mentions: 1
Published: over 3 years ago
10.12688/wellcomeopenres.15095.2
Autism and social anxiety in children with sex chromosome trisomies: an observational study
Cited by: 18
Author(s): Alexander C. Wilson, Judith King, Dorothy V. M. Bishop
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-60609-y
TASH: Toolbox for the Automated Segmentation of Heschl’s gyrus
Cited by: 19
Author(s): Josué Luiz Dalboni da Rocha, Peter Schneider, Jan Benner, Roberta Santoro, Tanja Atanasova, Dimitri Van De Ville, Narly Golestani
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-9-539
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
Cited by: 149
Author(s): Renato H. Orsi, Mark Borowsky, Peter Lauer, Sarah Young, Chad Nusbaum, James E. Galagan, Bruce W. Birren, Reid A. Ivy, Qi Sun, Lewis M. Graves, Bala Swaminathan, Martin Wiedmann
Software Mentions: 1
Published: about 16 years ago
10.1038/s41598-020-70557-2
Rapid recovery of locomotor performance after leg loss in harvestmen
Cited by: 8
Author(s): Ignacio Escalante, Marc Badger, Damian O. Elias
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-76719-6
HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
Cited by: 1
Author(s): Bingqing Yan, Siwei Zhang, Siyang Yu, S. Hussain, Tianyang Liu, Bozhi Wang, Xiaoyu Dong, Fen Ma, Lanlan Wei
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-77755-y
Bundling of cellulose microfibrils in native and polyethylene glycol-containing wood cell walls revealed by small-angle neutron scattering
Cited by: 14
Author(s): Paavo A. Penttilä, Michael Altgen, Muhammad Awais, Monika Österberg, Lauri Rautkari, Ralf Schweins
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-015-1864-y
Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes
Cited by: 57
Author(s): A. P. Garg, Lalit Agrawal, Rajesh Chandra Misra, S. Sharma, Sumit Ghosh
Software Mentions: 1
Published: about 9 years ago
10.3390/v12050577
Comparative Genomics Unveils Regionalized Evolution of the Faustovirus Genomes
Cited by: 7
Author(s): Khalil Geballa-Koukoulas, Hadjer Boudjemaa, Julien Andréani, Bernard La Scola, Guillaume Blanc
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-88691-w
Male courtship song drives escape responses that are suppressed for successful mating
Cited by: 1
Author(s): Eliane Arez, Cecilia Mezzera, Ricardo M. Neto-Silva, Márcia M. Aranha, Sophie Dias, Marta A. Moita, Maria Luísa Vasconcelos
Software Mentions: 1
Published: over 3 years ago
10.1186/s13568-016-0310-0
Metagenomic insights into the rumen microbial fibrolytic enzymes in Indian crossbred cattle fed finger millet straw
Cited by: 50
Author(s): V. Lyju Jose, A. Thulasi, Ravi Prabhakar More, Arun Arumugaperumal
Software Mentions: 1
Published: almost 8 years ago
10.1128/MRA.00349-19
Complete Genome Sequence of a Novel Myoviridae Phage, SfΦ01, Infecting Shigella spp
Cited by: 1
Author(s): Masaaki Kitajima, Satoshi Ishii, Tatsuma Takagi, Satoshi Okabe
Software Mentions: 1
Published: over 5 years ago
10.3390/s19194273
Cost-efficient and Custom Electrode-holder Assembly Infrastructure for EEG Recordings
Cited by: 8
Author(s): Yuan-Pin Lin, Ting‐Yu Chen, Wei-Jen Chen
Software Mentions: 1
Published: about 5 years ago
10.1186/s12915-016-0299-5
Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants
Cited by: 68
Author(s): JunMo Lee, Chung Hyun Cho, Seung In Park, Jin-Tak Choi, Hak Jun Song, John A. West, Debashish Bhattacharya, Hwan Su Yoon
Software Mentions: 1
Published: about 8 years ago
10.3390/brainsci11020266
Modulation of Interhemispheric Inhibition between Primary Motor Cortices Induced by Manual Motor Imitation: A Transcranial Magnetic Stimulation Study
Cited by: 2
Author(s): Dongting Tian, Shin Ichi Izumi, Eizaburo Suzuki
Software Mentions: 1
Published: almost 4 years ago
10.2196/10120
User Experience of Cognitive Behavioral Therapy Apps for Depression: An Analysis of App Functionality and User Reviews
Cited by: 147
Author(s): Katarzyna Stawarz, Chris Preist, Debbie Tallon, Nicola Wiles, David Coyle
Software Mentions: 1
Published: over 6 years ago
10.1186/s13029-020-0077-1
2DKD: a toolkit for content-based local image search
Cited by: 1
Author(s): Julian S. DeVille, Daisuke Kihara, Atilla Sit
Software Mentions: 1
Published: almost 5 years ago
10.1136/bmjopen-2017-017989
Cohort profile for the MASTERMIND study: using the Clinical Practice Research Datalink (CPRD) to investigate stratification of response to treatment in patients with type 2 diabetes
Cited by: 23
Author(s): Lauren R. Rodgers, Michael N. Weedon, William Henley, Andrew T. Hattersley, Beverley M. Shields
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2018.01580
The Role of Fur in the Transcriptional and Iron Homeostatic Response of Enterococcus faecalis
Cited by: 20
Author(s): Mauricio Latorre, Daniela Quenti, Dante Travisany, Kavindra V. Singh, Barbara E. Murray, Alejandro Maass, Verónica Cambiazo
Software Mentions: 1
Published: over 6 years ago
10.3389/fnhum.2019.00366
Challenge for Affective Brain-Computer Interfaces: Non-stationary Spatio-spectral EEG Oscillations of Emotional Responses
Cited by: 27
Author(s): Yi-Wei Shen, Yuan-Pin Lin
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2017.01466
Genome-Wide Mapping of Transcriptional Regulation and Metabolism Describes Information-Processing Units in Escherichia coli
Cited by: 13
Author(s): Daniela Ledezma-Tejeida, Cecilia Ishida, Julio Collado‐Vides
Software Mentions: 1
Published: over 7 years ago
10.3389/fgene.2018.00688
Genome-Wide SNP Data Revealed the Extent of Linkage Disequilibrium, Persistence of Phase and Effective Population Size in Purebred and Crossbred Buffalo Populations
Cited by: 21
Author(s): Tingxian Deng, Aixin Liang, Jiajia Li, Guohua Hua, Tingzhu Ye, Shenhe Liu, Giuseppe Campanile, Graham Plastow, Chunyan Zhang, Zhiquan Wang, Angela Salzano, B. Gasparrini, Martino Cassandro, Hasan Riaz, Xianwei Liang, Liguo Yang
Software Mentions: 1
Published: almost 6 years ago
10.1002/2211-5463.12725
Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family
Cited by: 1
Author(s): Nagarajan Naveenkumar, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
Software Mentions: 1
Published: about 5 years ago
10.1002/ece3.4737
Eusociality outcompetes egalitarian and solitary strategies when resources are limited and reproduction is costly
Cited by: 13
Author(s): Emanuel A. Fronhofer, Jürgen Liebig, Oliver Mitesser, Hans Joachim Poethke
Software Mentions: 1
Published: almost 6 years ago
10.1093/database/bax063
KiPho: malaria parasite kinome and phosphatome portal
Cited by: 1
Author(s): Rajan Kumar Pandey, Pawan Kumar, Dinesh Gupta
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.dib.2021.107016
Dataset: A proxy for historical CO2 emissions related to centralised electricity generation in Europe
Cited by: 0
Author(s): Leon Joachim Schwenk-Nebbe, Marta Victoria, Gorm Bruun Andresen
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2016.00028
Metagenomic Analysis Indicates Epsilonproteobacteria as a Potential Cause of Microbial Corrosion in Pipelines Injected with Bisulfite
Cited by: 26
Author(s): Dongshan An, Xiaoli Dong, Annie An, Hyung S. Park, Marc Strous, Gerrit Voordouw
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12915-021-01037-w
LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images
Cited by: 22
Author(s): Sébastien Herbert, Léo Valon, Laure Mancini, Nicolas Dray, Paolo Caldarelli, Jérôme Gros, Elric Esposito, Spencer Shorte, Laure Bally‐Cuif, Nathalie Aulner, Romain Levayer, Jean-Yves Tinévez
Software Mentions: 1
Published: over 3 years ago
10.1093/sysbio/syw116
Dental data perform relatively poorly in reconstructing mammal phylogenies: Morphological partitions evaluated with molecular benchmarks
Cited by: 23
Author(s): Robert S. Sansom, Matthew A. Wills, Tamara Williams
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.dib.2017.09.009
Data on eye behavior during idea generation and letter-by-letter reading
Cited by: 3
Author(s): Sonja Annerer‐Walcher, Christof Körner, Mathias Benedek
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.csbj.2021.01.038
Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon
Cited by: 2
Author(s): Marius André Strand, Yang Jin, Simen Rød Sandve, Phillip B. Pope, Torgeir R. Hvidsten
Software Mentions: 1
Published: almost 4 years ago
10.3389/fnmol.2016.00082
DNA Methylation Adjusts the Specificity of Memories Depending on the Learning Context and Promotes Relearning in Honeybees
Cited by: 14
Author(s): Stephanie Biergans, Charles Claudianos, Judith Reinhard, C. Giovanni Galizia
Software Mentions: 1
Published: about 8 years ago
10.3389/fnmol.2018.00090
miRNA Long-Term Response to Early Metabolic Environmental Challenge in Hypothalamic Arcuate Nucleus
Cited by: 6
Author(s): Charlotte Benoît, Soraya Doubi-Kadmiri, Xavier Benigni, Delphine Crépin, Laure Riffault, Ghislaine Poizat, Claire-Marie Vacher, Mohammed Taouis, Anne Baroin-Tourancheau, Laurence Amar
Software Mentions: 1
Published: over 6 years ago
10.1186/s13104-018-3916-2
The burden of gastroenteritis in Switzerland (BUGS) study: a research proposal for a 1-year, prospective cohort study
Cited by: 1
Author(s): Claudia Schmutz, Daniel Mäusezahl
Software Mentions: 1
Published: about 6 years ago
10.3389/fneur.2019.00873
A Novel Continuously Recording Approach for Unraveling Ontogenetic Development of Sleep-Wake Cycle in Rats
Cited by: 3
Author(s): Guang-Fu Cui, Min Hou, Yu-Feng Shao, Hailin Chen, Jin-Xian Gao, Jun-Fan Xie, Yu-Nong Chen, Chao-Yu Cong, Feng-Qiu Dai, Yiping Hou
Software Mentions: 1
Published: over 5 years ago
10.1002/cpt.2223
Systematic Review and Patient‐Level Meta‐Analysis of SARS‐CoV‐2 Viral Dynamics to Model Response to Antiviral Therapies
Cited by: 23
Author(s): Silke Gastine, Juanita Pang, Florencia A.T. Boshier, Simon J. Carter, Derrick Lonsdale, Mario Cortina‐Borja, Ivan Hung, Judith Breuer, Frank Kloprogge, Joseph F. Standing
Software Mentions: 1
Published: over 3 years ago