Ecosyste.ms: Papers

10.3389/fpls.2016.02058

A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2015.00965

Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering
Cited by: 26
Author(s): Mehanathan Muthamilarasan, Yusuf Khan, Jananee Jaishankar, Shweta Shweta, Charu Lata
Software Mentions: 2
Published: about 9 years ago

10.3389/fpsyg.2018.02225

Korean Mothers Attune the Frequency and Acoustic Saliency of Sound Symbolic Words to the Linguistic Maturity of Their Children
Cited by: 6
Author(s): Jinyoung Jo, Eon-Suk Ko
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.113.009316

A Dense Linkage Map for Chinook salmon (<i>Oncorhynchus tshawytscha</i>) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
Cited by: 87
Author(s): Marine S. O. Brieuc, Charles Waters, James E. Seeb, Kerry A. Naish
Software Mentions: 2
Published: over 10 years ago

10.1534/g3.114.016097

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model
Cited by: 229
Author(s): Marco Lopez‐Cruz, J. Crossa, David Bonnett, Susanne Dreisigacker, Jesse Poland, Jean‐Luc Jannink, Ravi P. Singh, Enrique Autrique, Gustavo de los Campos
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.116.032797

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci
Cited by: 107
Author(s): Christina A. Cuomo, Guus Bakkeren, H. M. Khalil, Vinay Panwar, David L. Joly, Rob Linning, Sharadha Sakthikumar, Xiao Ping Song, Xian Adiconis, Fan Lin, Jonathan M. Goldberg, Joshua Z. Levin, Sarah Young, Qiandong Zeng, Y. Anikster, Myron Bruce, Meinan Wang, Chuntao Yin, Brent D. McCallum, Les J. Szabo, Scot H. Hulbert, Xianming Chen, John P. Fellers
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.117.041806

Habitat Predicts Levels of Genetic Admixture in<i>Saccharomyces cerevisiae</i>
Cited by: 12
Author(s): Viranga Tilakaratna, Douda Bensasson
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-015-0867-y

Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes
Cited by: 44
Author(s): Dongying Gao, Yupeng Li, Kyung Do Kim, Brian Abernathy, Scott A. Jackson
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13059-018-1445-x

Systematic evaluation of CRISPR-Cas systems reveals design principles for genome editing in human cells
Cited by: 59
Author(s): Yuanming Wang, Kaiwen Ivy Liu, Norfala-Aliah Binte Sutrisnoh, Harini Srinivasan, Junyi Zhang, Jia Li, Zhengqiu Fan, John Lalith Charles Richard, Heyun Xing, Raghuvaran Shanmugam, Jia Nee Foo, Hwee Ting Yeo, Kim Tiow Ooi, Tore Bleckwehl, Yi Yun Rachel Par, Shi Mun Lee, Nur Nadiah Binte Ismail, Nur Aidah Binti Sanwari, Si Ting Vanessa Lee, Jan Lew, Meng How Tan
Software Mentions: 2
Published: over 6 years ago

10.1186/s13059-021-02268-4

Minimal genome-wide human CRISPR-Cas9 library
Cited by: 33
Author(s): Emanuel Gonçalvès, Mark Thomas, Fiona M. Behan, Gabriele Picco, Clare Pacini, Felicity Allen, Alessandro Vinceti, Mamta Sharma, David A. Jackson, Stacey Price, Charlotte Beaver, Oliver M. Dovey, David J. Parry‐Smith, Francesco Iorio, Leopold Parts, Kosuke Yusa, Mathew J. Garnett
Software Mentions: 2
Published: almost 4 years ago

10.1093/gbe/evv038

Genome Evolution in the Primary Endosymbiont of Whiteflies Sheds Light on Their Divergence
Cited by: 46
Author(s): Diego Santos-García, Carlos Vargas-Chávez, Andrés Moya, Amparo Latorre, Francisco J. Silva
Software Mentions: 2
Published: almost 10 years ago

10.1093/gbe/evz172

Adaptation to Extreme Environments in an Admixed Human Population from the Atacama Desert
Cited by: 12
Author(s): Lucas Vicuña, Mario Fernández, Cecilia Vial, Patricio Valdebenito, Eduardo Chaparro, Karena Espinoza, Annemarie Ziegler, Alberto Bustamante, S. Eyheramendy
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-020-00803-9

dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs
Cited by: 245
Author(s): Xiaoming Liu, Chang Li, Chengcheng Mou, Yibo Dong, Yi-Cheng Tu
Software Mentions: 2
Published: almost 4 years ago

10.1186/2191-0855-2-1

SimReg1 is a master switch for biosynthesis and export of simocyclinone D8 and its precursors
Cited by: 35
Author(s): Liliya Horbal, Yuriy Rebets, Mariya Rabyk, Roman Makitrynskyy, Andriy Luzhetskyy, Victor Fedorenko, Andreas Bechthold
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.yhbeh.2017.05.011

Risk-averse personalities have a systemically potentiated neuroendocrine stress axis: A multilevel experiment in Parus major
Cited by: 36
Author(s): Alexander T. Baugh, Rebecca A. Senft, Marian Firke, Abigail Lauder, Julia Schroeder, Simone Meddle, Kees van Oers, Michaela Hau
Software Mentions: 2
Published: over 7 years ago

10.1038/s41438-020-00374-1

Mining and validation of novel genotyping-by-sequencing (GBS)-based simple sequence repeats (SSRs) and their application for the estimation of the genetic diversity and population structure of coconuts (Cocos nucifera L.) in Thailand
Cited by: 14
Author(s): Kanamon Riangwong, Samart Wanchana, Wanchana Aesomnuk, Chatree Saensuk, Phakchana Nubankoh, Vinitchan Ruanjaichon, Tippaya Kraithong, Theerayut Toojinda, Apichart Vanavichit, Siwaret Arikit
Software Mentions: 2
Published: about 4 years ago

10.1111/imm.13307

The immunopeptidomes of two transmissible cancers and their host have a common, dominant peptide motif
Cited by: 2
Author(s): Annalisa Gastaldello, Sri H. Ramarathinam, A.G. Bailey, Rachel Owen, Steve Turner, Nasia Kontouli, Tim Elliott, Paul Skipp, Anthony W. Purcell, Hannah V. Siddle
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.invent.2021.100370

What do users think about Virtual Reality relaxation applications? A mixed methods study of online user reviews using natural language processing
Cited by: 12
Author(s): Simon Fagernäs, William Hamilton, Nicolás Espinoza, Alexander Miloff, Per Carlbring, Philip Lindner
Software Mentions: 2
Published: over 3 years ago

10.1186/s13321-015-0074-6

Applying DEKOIS 2.0 in structure-based virtual screening to probe the impact of preparation procedures and score normalization
Cited by: 23
Author(s): Tamer M. Ibrahim, Matthias R. Bauer, Frank M. Boeckler
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1009506

The antiviral sirtuin 3 bridges protein acetylation to mitochondrial integrity and metabolism during human cytomegalovirus infection
Cited by: 16
Author(s): Xuanyu Sheng, Ileana M. Cristea
Software Mentions: 2
Published: over 3 years ago

10.1002/pmic.201200412

Quantitative analysis of chaperone network throughput in budding yeast
Cited by: 33
Author(s): Philip Brownridge, Craig Lawless, Aishwarya Payapilly, Karin Lanthaler, Stephen W. Holman, Victoria M. Harman, Chris M. Grant, Robert J. Beynon, Simon J. Hubbard
Software Mentions: 2
Published: over 11 years ago

10.1038/s41597-020-00680-2

A naturalistic neuroimaging database for understanding the brain using ecological stimuli
Cited by: 47
Author(s): Sarah Aliko, Jiawen Huang, Florin Gheorghiu, Stefanie Meliß, Jeremy I. Skipper
Software Mentions: 2
Published: about 4 years ago

10.1038/srep18662

Sequence and gene expression evolution of paralogous genes in willows
Cited by: 12
Author(s): Srilakshmy L. Harikrishnan, Pascal Pucholt, Sofia Berlin
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep44283

Analysis of Campylobacter jejuni infection in the gnotobiotic piglet and genome-wide identification of bacterial factors required for infection
Cited by: 15
Author(s): Stefan P. W. de Vries, Aileen Linn, Kareen Macleod, Amanda MacCallum, Simon P. Hardy, Gill Douce, E.D. Watson, Mark P. Dagleish, H. Thompson, Andy Stevenson, David J. Kennedy, Abiyad Baig, Chris Coward, Duncan J. Maskell, David George Emslie Smith, A. Grant, Paul Everest
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-23337-y

Comparative whole-genome sequence analysis of Mycobacterium tuberculosis isolated from tuberculous meningitis and pulmonary tuberculosis patients
Cited by: 21
Author(s): Kiatichai Faksri, Eryu Xia, Rick Twee‐Hee Ong, Jun Tan, Ditthawat Nonghanphithak, Nampueng Makhao, Nongnard Thamnongdee, Arirat Thanormchat, Arisa Phurattanakornkul, Somcharn Rattanarangsee, Chate Ratanajaraya, Prapat Suriyaphol, Therdsak Prammananan, Yik-Ying Teo, Angkana Chaiprasert
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-35926-y

The mitochondrial genome of Endoconidiophora resinifera is intron rich
Cited by: 33
Author(s): Abdullah Zubaer, Alvan Wai, Georg Hausner
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-71471-3

A customized scaffolds approach for the detection and phasing of complex variants by next-generation sequencing
Cited by: 1
Author(s): Qiandong Zeng, Natalia T. Leach, Zhaoqing Zhou, Hui Zhu, Jean A. Smith, Lynne S Rosenblum, Angela Kenyon, Ruth A. Heim, Marcia Eisenberg, Stanley Letovsky, Patricia M. Okamoto
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-72577-4

A novel universal primer pair for prokaryotes with improved performances for anammox containing communities
Cited by: 7
Author(s): Lorenzo Mazzoli, Giulio Munz, Tommaso Lotti, Matteo Ramazzotti
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-74526-7

Improving read alignment through the generation of alternative reference via iterative strategy
Cited by: 2
Author(s): Lina Bu, Qi Wang, Wenjin Gu, Ruifei Yang, Di Zhu, Zhuo Song, Xiaojun Liu, Yiqiang Zhao
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-83348-0

Creation of a gene expression portrait of depression and its application for identifying potential treatments
Cited by: 10
Author(s): Stephen C. Gammie
Software Mentions: 2
Published: almost 4 years ago

10.3390/s20113033

Gentle Versus Strong Touch Classification: Preliminary Results, Challenges, and Potentials
Cited by: 3
Author(s): Soheil Keshmiri, Masahiro Shiomi, Hidenobu Sumioka, Takashi Minato, Hiroshi Ishiguro
Software Mentions: 2
Published: over 4 years ago

10.3390/s20195658

Spectral Color Management in Virtual Reality Scenes
Cited by: 7
Author(s): Francisco Díaz–Barrancas, Halina Cwierz, Pedro José Pardo Fernández, Ángel Luis Sanz Pérez, M. I. Suero
Software Mentions: 2
Published: about 4 years ago

10.1128/mBio.01038-17

Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream Physiology
Cited by: 2
Author(s): Tao Yu, Markus W. Covert
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.02107-20

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona
Cited by: 27
Author(s): Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, Krystal Sheridan, Ashlyn Pfeiffer, Hayley Yaglom, Darrin Lemmer, Jason W. Sahl, Emily A Kaelin, Rabia Maqsood, Nicholas A. Bokulich, Grace Quirk, Thomas D. Watts, Kenneth Komatsu, Victor Waddell, Efrem S. Lim, J. Gregory Caporaso, David M. Engelthaler, Michael Worobey, Paul Keim
Software Mentions: 2
Published: about 4 years ago

10.1128/mSystems.00134-21

Multilevel Genome Typing Describes Short- and Long-Term Vibrio cholerae Molecular Epidemiology
Cited by: 6
Author(s): Liam Cheney, Michael Payne, Sandeep Kaur, Ruiting Lan
Software Mentions: 2
Published: about 3 years ago

10.1093/jhered/esab009

Limited Evidence for Parallel Evolution Among Desert-Adapted <i>Peromyscus</i> Deer Mice
Cited by: 10
Author(s): Jocelyn P. Colella, Anna Tigano, Olga Dudchenko, Arina D. Omer, Ruqayya Khan, Ivan D. Bochkov, E Aiden, Matthew D. MacManes
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph17217779

Method for Quantifying Variation in the Resistance of Electronic Cigarette Coils
Cited by: 6
Author(s): Qutaiba Saleh, Edward Hensel, Risa J Robinson
Software Mentions: 2
Published: about 4 years ago

10.1007/s00239-017-9801-0

The Distribution of Miniature Impala Elements and SIX Genes in the Fusarium Genus is Suggestive of Horizontal Gene Transfer
Cited by: 32
Author(s): Peter van Dam, Martijn Rep
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.52416

Repression of interrupted and intact rDNA by the SUMO pathway in Drosophila melanogaster
Cited by: 9
Author(s): Yicheng Luo, Elena Fefelova, Maria Ninova, Yung-Chia Ariel Chen, Alexei A. Aravin
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.52355

Single-molecule turnover dynamics of actin and membrane coat proteins in clathrin-mediated endocytosis
Cited by: 20
Author(s): Michael M. Lacy, David Baddeley, Julien Berro
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.65722

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast
Cited by: 18
Author(s): Rong Yu, Egor Vorontsov, Carina Sihlbom, Jens Nielsen
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms17111887

Generation and Characterisation of a Reference Transcriptome for Lentil (Lens culinaris Medik.)
Cited by: 39
Author(s): Shimna Sudheesh, Preeti Verma, John W. Forster, Noel O. I. Cogan, Sukhjiwan Kaur
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms21249422

A Novel Amino Acid Substitution, Fibrinogen Bβp.Pro234Leu, Associated with Hypofibrinogenemia Causing Impairment of Fibrinogen Assembly and Secretion
Cited by: 1
Author(s): Takahiro Kaido, Masahiro Yoda, Tomu Kamijo, Shinpei Arai, Chiaki Taira, Yumiko Higuchi, Nobuo Okumura
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22073595

Molecular Docking and Molecular Dynamics Simulation Studies of Triterpenes from Vernonia patula with the Cannabinoid Type 1 Receptor
Cited by: 10
Author(s): Md Afjalus Siraj, Mustafizur Rahman, Ghee Teng Tan, Véronique Seidel
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2021.102538

Artificial neural network trained on smartphone behavior can trace epileptiform activity in epilepsy
Cited by: 8
Author(s): Robert B. Duckrow, Enea Ceolini, Hitten P. Zaveri, Cornell Brooks, Arko Ghosh
Software Mentions: 2
Published: over 3 years ago

10.1128/JVI.00677-18

Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma
Cited by: 5
Author(s): Katherine James, Thushan I. de Silva, Katherine A. Brown, Hilton Whittle, Stephen Taylor, Gilean McVean, Joakim Esbjörnsson, Sarah Rowland‐Jones
Software Mentions: 2
Published: almost 6 years ago

10.1523/ENEURO.0212-18.2018

Systematic Analysis of Transmitter Coexpression Reveals Organizing Principles of Local Interneuron Heterogeneity
Cited by: 8
Author(s): Kristyn M. Lizbinski, Gary Marsat, Andrew M. Dacks
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0170120

Airway Microbial Community Turnover Differs by BPD Severity in Ventilated Preterm Infants
Cited by: 54
Author(s): Brandie D. Wagner, Marci K. Sontag, J. Kirk Harris, Josh Miller, Lindsey A. Morrow, Charles E. Robertson, Mark Stephens, Brenda B. Poindexter, Steven H. Abman, Peter M. Mourani
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0249406

Single nucleotide polymorphisms affect miRNA target prediction in bovine
Cited by: 4
Author(s): Marco Antônio Perpétuo de Sousa, Flávia Regina Florencio de Athayde, Mariângela Bueno Cordeiro Maldonado, A. O. de Lima, M. R. S. Fortes, Flávia L. Lopes
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0197588

Toward quantitative and reproducible clinical use of OCT-Angiography
Cited by: 4
Author(s): Ikrame Douma, D. Rousseau, Rebeccat Sallit, Laurent Kodjikian, Philippe Denis
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0208511

First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees
Cited by: 25
Author(s): Arif Muhammad Khan, Sajjad Asaf, Abdul Latif Khan, Ahmed Al‐Harrasi, Omar Al-Sudairy, Noor Mazin Abdulkareem, Adil Khan, Tariq Shehzad, Nadiya A. Al-Saady, Ali Al-Lawati, Ahmed Al‐Rawahi, Zabta Khan Shinwari
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0237455

De novo sequence assembly requires bioinformatic checking of chimeric sequences
Cited by: 16
Author(s): Laila Sara Arroyo Mühr, Camilla Lagheden, Sadaf Hassan, Sara Nordqvist Kleppe, Emilie Hultin, Joakim Dillner
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0161802

X-Linked and Autosomal Recessive Alport Syndrome: Pathogenic Variant Features and Further Genotype-Phenotype Correlations
Cited by: 71
Author(s): Judith Savige, Helen Storey, Hae Il Cheong, Hee Gyung Kang, Eujin Park, Pascale Hilbert, Anton V. Persikov, Carmen Torres-Fernandez, Elisabet Ars, Roser Torra, Jens Michael Hertz, Mads Thomassen, Lev Shagam, Dongmao Wang, Yanyan Wang, Frances Flinter, Mato Nagel
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-15-924

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
Cited by: 26
Author(s): Oleg Dmytrenko, Shelbi L. Russell, Wesley T. Loo, Kristina M. Fontanez, Li Liao, Guus Roeselers, Raghav Sharma, Frank J. Stewart, Irene L. G. Newton, Tanja Woyke, Dongying Wu, Jenna M. Lang, Jonathan A. Eisen, Colleen M. Cavanaugh
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2018.02039

Active Crossfire Between Cyanobacteria and Cyanophages in Phototrophic Mat Communities Within Hot Springs
Cited by: 18
Author(s): Sergio Guajardo-Leiva, Carlos Pedrós-Alió, Óscar Rivero Salgado, Fabián Pinto, Beatriz Dı́ez
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-020-06945-9

A comparative genomics study of neuropeptide genes in the cnidarian subclasses Hexacorallia and Ceriantharia
Cited by: 16
Author(s): Thomas Lund Koch, Cornelis J.P. Grimmelikhuijzen
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2019.01610

High Prevalence of Metallo-β-Lactamase-Producing Enterobacter cloacae From Three Tertiary Hospitals in China
Cited by: 28
Author(s): Yuanqing Cai, Chen Cha, Mei Zhao, Xinmin Yu, Kai Lan, Kang Liao, Penghao Guo, Weizheng Zhang, Xingyan Ma, Yundong He, Jianming Zeng, Liang Chen, Wei Jia, Yi Tang, Bin Huang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0081389

Profiling mRNAs of Two Cuscuta Species Reveals Possible Candidate Transcripts Shared by Parasitic Plants
Cited by: 23
Author(s): Linjian Jiang, Asela J. Wijeratne, Saranga Wijeratne, Martina Fraga, Tea Meulia, Douglas Doohan, Zhaohu Li, Feng Qu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0175425

Whole genome sequencing of Brucella melitensis isolated from 57 patients in Germany reveals high diversity in strains from Middle East
Cited by: 67
Author(s): Enrico Georgi, Mathias C. Walter, Marie-Theres Pfalzgraf, Bernd H. Northoff, Lesca M. Holdt, Holger C. Scholz, Lothar Zoeller, Sabine Zange, Markus Antwerpen
Software Mentions: 1
Published: over 7 years ago

10.3389/fmolb.2021.716973

DeepComplex: A Web Server of Predicting Protein Complex Structures by Deep Learning Inter-chain Contact Prediction and Distance-Based Modelling
Cited by: 12
Author(s): Farhan Quadir, Raj Roy, Elham Soltanikazemi, Jianlin Cheng
Software Mentions: 1
Published: about 3 years ago

10.3389/fmolb.2018.00027

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs
Cited by: 4
Author(s): Saakshi Jalali, Shrey Gandhi, Vinod Scaria
Software Mentions: 1
Published: over 6 years ago

10.3389/fninf.2013.00046

A midas plugin to enable construction of reproducible web-based image processing pipelines
Cited by: 0
Author(s): Michael Grauer, Patrick Reynolds, Marion Hoogstoel, François Budin, Martin Styner, Ipek Oguz
Software Mentions: 1
Published: almost 12 years ago

10.3389/fonc.2020.614430

Establishment of Criteria for Molecular Differential Diagnosis of MPLC and IPM
Cited by: 3
Author(s): Xiaohui Wang, Gong Yang, Jianfei Yao, Yan Chen, Yuemin Li, Zhen Zeng, Yinying Lu, Lele Song
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2019.00337

1H NMR-Based Metabolomics Reveals Refined-Huang-Lian-Jie-Du-Decoction (BBG) as a Potential Ischemic Stroke Treatment Drug With Efficacy and a Favorable Therapeutic Window
Cited by: 21
Author(s): Xiaowei Fu, Junsong Wang, Shanting Liao, Yan Lv, Ding‐Qiao Xu, Ming‐Hua Yang, Ling‐Yi Kong
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.580481

Ranolazine as an Alternative Therapy to Flecainide for SCN5A V411M Long QT Syndrome Type 3 Patients
Cited by: 5
Author(s): Jordi Cano, Esther Zorio, Andrea Mazzanti, Miguel Á. Arnau, Beatriz Trénor, Silvia G. Priori, Javier Sáiz, Lucía Romero
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2020.00305

Clinical Efficacy Evaluation of 1-Year Subcutaneous Immunotherapy for Artemisia sieversiana Pollen Allergic Rhinitis by Serum Metabolomics
Cited by: 9
Author(s): Hai-Yun Shi, Pan Chen, Tingting Ma, Yan-Lei Chen, Wei-Jun Yan, Jianguo Liu, Mengda Cao, Hongdong Huang, Deyun Wang, Xueyan Wang, Ji‐Fu Wei
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0003280

Post-translational Modification of LipL32 during Leptospira interrogans Infection
Cited by: 33
Author(s): Timothy Douglas Witchell, Azad Eshghi, Jarlath E. Nally, Rebecca Hof, Martin J. Boulanger, Elsio A. Wunder, Albert I. Ko, David A. Haake, Caroline E. Cameron
Software Mentions: 1
Published: about 10 years ago

10.3389/fphys.2016.00080

Intrinsic and Network Mechanisms Constrain Neural Synchrony in the Moth Antennal Lobe
Cited by: 6
Author(s): Hong Lei, Yanxue Yu, Shuifang Zhu, Aaditya V. Rangan
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2018.01488

Blockade of Rostral Ventrolateral Medulla Apelin Receptors Does Not Attenuate Arterial Pressure in SHR and L-NAME-Induced Hypertensive Rats
Cited by: 5
Author(s): Philip R. Griffiths, Stephen J. Lolait, Louise E. Pearce, Fiona D McBryde, Julian F. R. Paton, Anne-Marie O’Carroll
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0008036

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016
Cited by: 28
Author(s): Sadia Isfat Ara Rahman, Zoe A. Dyson, Elizabeth J. Klemm, Farhana Khanam, Kathryn E. Holt, Emran Kabir Chowdhury, Gordon Dougan, Firdausi Qadri
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2015.00645

Development of genome-wide informative simple sequence repeat markers for large-scale genotyping applications in chickpea and development of web resource
Cited by: 29
Author(s): Swarup K. Parida, Mohit Verma, Santosh Kumar Yadav, Supriya Ambawat, Shouvik Das, Rohini Garg, Mukesh Jain
Software Mentions: 1
Published: over 9 years ago

10.1002/acn3.51190

Dominant mutations in ITPR3 cause Charcot‐Marie‐Tooth disease
Cited by: 9
Author(s): Julius Rönkkö, Svetlana M. Molchanova, Anya Revah‐Politi, Elaine M. Pereira, Mari Auranen, Jussi Toppila, Jouni Kvist, Anastasia Ludwig, Julika Neumann, Geert Bultynck, Stéphanie Humblet-Baron, Adrian Liston, Anders Paetau, Claudio Rivera, Matthew B. Harms, Henna Tyynismaa, Emil Ylikallio
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pntd.0008068

Investigation of pyrimidine nucleoside analogues as chemical probes to assess compound effects on the proliferation of Trypanosoma cruzi intracellular parasites
Cited by: 9
Author(s): Melissa Sykes, David H. Hilko, Livia Isabella Kung, Sally‐Ann Poulsen, Vicky M. Avery
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1004552

Ku-Mediated Coupling of DNA Cleavage and Repair during Programmed Genome Rearrangements in the Ciliate Paramecium tetraurelia
Cited by: 34
Author(s): Antoine Marmignon, Julien Bischerour, Aude Silve, Clémentine Fojcik, Emeline Dubois, Olivier Arnaiz, Aurélie Kapusta, Sophie Malinsky, Mireille Bétermier
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1002292

Estimated Comparative Integration Hotspots Identify Different Behaviors of Retroviral Gene Transfer Vectors
Cited by: 17
Author(s): Alessandro Ambrosi, Ingrid K. Glad, Danilo Pellin, Claudia Cattoglio, Fulvio Mavilio, Clelia Di Serio, Arnoldo Frigessi
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-13-244

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon
Cited by: 104
Author(s): Ross D. Houston, John W. Davey, Stephen Bishop, Natalie R Lowe, J. C. Mota-Velasco, Alastair Hamilton, D. R. Guy, A. E. Tinch, Marian Thomson, Mark Blaxter, Karim Gharbi, James E. Bron, John B. Taggart
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12966-014-0124-x

Active transportation and public transportation use to achieve physical activity recommendations? A combined GPS, accelerometer, and mobility survey study
Cited by: 92
Author(s): Basile Chaix, Yan Kestens, Scott Duncan, Claire Merrien, Benoît Thierry, Bruno Pannier, Ruben Brondeel, Antoine Lewin, Noëlla Karusisi, Camille Perchoux, Frédérique Thomas, Julie Méline
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pbio.1002353

Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling
Cited by: 132
Author(s): Richard W. R. Wallbank, Simon W. Baxter, Carolina Pardo‐Díaz, Joseph J. Hanly, Simon H. Martin, James Mallet, Kanchon K. Dasmahapatra, Camilo Salazar, Mathieu Joron, Nicola J. Nadeau, W. Owen McMillan, Chris D. Jiggins
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2016.02054

The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses
Cited by: 94
Author(s): Ruisen Lu, Pan Li, Ying‐Xiong Qiu
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2017.00309

Spatial Variation of Leaf Optical Properties in a Boreal Forest Is Influenced by Species and Light Environment
Cited by: 28
Author(s): Jon Atherton, Beñat Olascoaga, Luis Alonso, Albert Porcar‐Castell
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/7410823

Comparative Genome Characterization of a Petroleum-Degrading <i>Bacillus subtilis</i> Strain DM2
Cited by: 9
Author(s): Shi-Weng Li, Meng‐Yuan Liu, Ruiqi Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1000591

Self-Organization and Regulation of Intrinsically Disordered Proteins with Folded N-Termini
Cited by: 25
Author(s): Philip C. Simister, Fred Schaper, Nicola O’Reilly, Simon J. McGowan, Stephan M. Feller
Software Mentions: 1
Published: almost 14 years ago

10.3389/fpls.2021.704697

Phylogenetic Occurrence of the Phenylpropanoid Pathway and Lignin Biosynthesis in Plants
Cited by: 33
Author(s): Tao Yao, Kai Feng, Meng Xie, Jaime Barros, Timothy J. Tschaplinski, Gerald A. Tuskan, Wellington Muchero, Jay Chen
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.2000225

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History
Cited by: 375
Author(s): Andrew Brooks, Kevin D. Kohl, Robert M. Brucker, Edward J. van Opstal, Seth R. Bordenstein
Software Mentions: 1
Published: about 8 years ago

10.1093/aob/mcaa122

Genome-wide genotyping elucidates the geographical diversification and dispersal of the polyploid and clonally propagated yam (Dioscorea alata)
Cited by: 23
Author(s): Bilal Muhammad Sharif, Concetta Burgarella, Fabien Cormier, Pierre Mournet, Sandrine Causse, Kien Nguyen Van, Juliane Kaoh, Mamy Tiana Rajaonah, Senanayake Ravinda Lakshan, Jeffrey Waki, Ranjana Bhattacharjee, Badara Guèye, Babil Pachakkil, Gemma Arnau
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyg.2018.02156

SPALEX: A Spanish Lexical Decision Database From a Massive Online Data Collection
Cited by: 21
Author(s): José Armando Aguasvivas, Manuel Carreiras, Marc Brysbaert, Paweł Mandera, Emmanuel Keuleers, Jon Andoni Duñabeitia
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.3000206

Tissue tropism and transmission ecology predict virulence of human RNA viruses
Cited by: 17
Author(s): Liam Brierley, Amy B. Pedersen, Mark E. J. Woolhouse
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpubh.2017.00165

Using Confidence Interval-Based Estimation of Relevance to Select Social-Cognitive Determinants for Behavior Change Interventions
Cited by: 42
Author(s): Rik Crutzen, Gjalt-Jorn Peters, Judith Noijen
Software Mentions: 1
Published: over 7 years ago

10.3389/fvets.2020.620094

Diagnostic Sequences That Distinguish M. avium Subspecies Strains
Cited by: 2
Author(s): John P. Bannantine, Judith R. Stabel, Darrell O. Bayles, Cyril Condé, Franck Biet
Software Mentions: 1
Published: almost 4 years ago

10.2196/11477

Wet Markets and Food Safety: TripAdvisor for Improved Global Digital Surveillance
Cited by: 12
Author(s): Leonardo Clemente, Isabelle Bolon, Nicolas Ray, Gabriel Alcoba, Jose Luis Fernandez-Marquez, Martin Müller, Sharada P. Mohanty, Rafael Luis Ruiz De Castañeda
Software Mentions: 1
Published: over 5 years ago

10.2196/18747

Social, Behavioral, and Cultural factors of HIV in Malawi: Semi-Automated Systematic Review
Cited by: 12
Author(s): Amaury Thiabaud, Isotta Triulzi, Erol Orel, Kali Tal, Olivia Keiser
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.115.026484

Neurofibromin Loss of Function Drives Excessive Grooming in <i>Drosophila</i>
Cited by: 30
Author(s): Lanikea B. King, Marta Koch, Keith R. Murphy, Yoheilly Velazquez, William W. Ja, Seth M. Tomchik
Software Mentions: 1
Published: over 8 years ago

10.1002/jsp2.1107

Mechanical and biological characterization of a composite annulus fibrosus repair strategy in an endplate delamination model
Cited by: 7
Author(s): Dmitriy Alexeev, Shangbin Cui, Sibylle Grad, Zhen Li, Stephen J. Ferguson
Software Mentions: 1
Published: over 4 years ago

10.1186/1746-4811-2-2

Cited by: 18
Author(s): Kevin A. Lease, Sung Ki Cho, John C. Walker
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12864-015-2065-4

De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis
Cited by: 42
Author(s): Yair Cárdenas-Conejo, Víctor Carballo-Uicab, Meric Lieberman, Margarita Aguilar‐Espinosa, Luca Comai, Renata Rivera‐Madrid
Software Mentions: 1
Published: about 9 years ago

10.1111/pce.12393

Differential expression of <scp>miRNAs</scp> and their target genes in senescing leaves and siliques: insights from deep sequencing of small <scp>RNAs</scp> and cleaved target <scp>RNAs</scp>
Cited by: 55
Author(s): Shawn R. Thatcher, Shaul Burd, C. David Wright, Amnon Lers, Pamela J. Green
Software Mentions: 1
Published: over 10 years ago

10.3390/pharmaceutics13050734

Combined Use of Structure Analysis, Studies of Molecular Association in Solution, and Molecular Modelling to Understand the Different Propensities of Dihydroxybenzoic Acids to Form Solid Phases
Cited by: 3
Author(s): Aija Trimdale, Anatoly Mishnev, Agris Bērziņš
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.119.400847

Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2
Cited by: 9
Author(s): Mareike Busche, Boas Pucker, Prisca Viehöver, Bernd Weißhaar, Ralf Stracke
Software Mentions: 1
Published: almost 5 years ago

10.3390/ph14040295

Fermentation Strategies for Production of Pharmaceutical Terpenoids in Engineered Yeast
Cited by: 21
Author(s): Erdem Çarşanba, Manuela Pintado, Carla Cristina Marques de Oliveira
Software Mentions: 1
Published: over 3 years ago

10.1155/2017/4761962

Clinical Applicability of Whole-Exome Sequencing Exemplified by a Study in Young Adults with the Advanced Cryptogenic Cholestatic Liver Diseases
Cited by: 4
Author(s): Maria Kulecka, Andrzej Habior, Agnieszka Paziewska, Krzysztof Goryca, Michalina Dąbrowska, Filip Ambrożkiewicz, Bożena Walewska-Zielecka, Andrzej Gabriel, Michał Mikula, Jerzy Ostrowski
Software Mentions: 1
Published: almost 8 years ago