Ecosyste.ms: Papers

10.3390/genes10030207

Ancient Mitochondrial Genomes Reveal the Absence of Maternal Kinship in the Burials of Çatalhöyük People and Their Genetic Affinities
Cited by: 17
Author(s): Maciej Chyleñski, Edvard Ehler, Mehmet Somel, Reyhan Yaka, Maja Krzewińska, Mirosława Dabert, Anna Juras, Arkadiusz Marciniak
Software Mentions: 1
Published: over 5 years ago

10.3390/ph10020052

Anti-Mycobacterial Evaluation of 7-Chloro-4-Aminoquinolines and Hologram Quantitative Structure–Activity Relationship (HQSAR) Modeling of Amino–Imino Tautomers
Cited by: 3
Author(s): Marcelle de Lima Ferreira Bispo, Camilo Henrique da Silva Lima, Inês Rugani Ribeiro de Castro, André Luis Peixoto Candea, Flávio A. F. M. Bezerra, Maria Cristina S. Lourenço, M. G. M. O. Henriques, Ricardo Bicca de Alencastro, Carlos R. Kaiser, Marcus V. N. de Souza, Magaly Girão Albuquerque
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.7260

Complete chloroplast genomes of medicinally important<i>Teucrium</i>species and comparative analyses with related species from Lamiaceae
Cited by: 12
Author(s): Arif Muhammad Khan, Sajjad Asaf, Abdul Latif Khan, Adil Khan, Ahmed Al‐Harrasi, Omar Al-Sudairy, Noor Mazin Abdulkareem, Nadiya A. Al-Saady, Ahmed Al‐Rawahi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12711-017-0339-9

Simultaneous fitting of genomic-BLUP and Bayes-C components in a genomic prediction model
Cited by: 5
Author(s): Oscar Okechukwu Michael Iheshiulor, John Woolliams, Mathias Tiedemann Svendsen, T. R. Solberg, Theo H. E. Meuwissen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12711-018-0378-x

Genomic selection signatures in sheep from the Western Pyrenees
Cited by: 32
Author(s): Otsanda Ruiz-Larrañaga, Jorge Langa, Fernando Rendo, Carmen Manzano, Mikel Iriondo, Andone Estonba
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.3578

A laid-back trip through the Hennigian Forests
Cited by: 37
Author(s): Evgeny V. Mavrodiev, Christopher Dell, Laura Schroder
Software Mentions: 1
Published: over 7 years ago

10.1186/gb-2011-12-4-r33

High recombination rates and hotspots in a Plasmodium falciparum genetic cross
Cited by: 83
Author(s): Hongying Jiang, Na Li, Vivek Gopalan, Martine Zilversmit, Sudhir Varma, Vijayaraj Nagarajan, Jian Li, Jianbing Mu, Karen Hayton, Bruce Henschen, Ming Yi, Robert M. Stephens, Gil McVean, Philip Awadalla, Thomas E. Wellems, Xin Su
Software Mentions: 1
Published: over 13 years ago

10.1186/gb-2011-12-s1-p44

Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors
Cited by: 0
Author(s): Amin A. Momin, Brian P. James, Thomas C Motter, Humam Kadara, Garth Powis, Ignacio I. Wistuba
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13059-014-0506-z

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
Cited by: 127
Author(s): Michael C. Schatz, Lyza Maron, Joshua C. Stein, Alejandro Hernandez Wences, James Gurtowski, Eric Biggers, Hayan Lee, Melissa Kramer, Eric Antoniou, Elena Ghiban, Mark H. Wright, Jer-Ming Chia, Doreen Ware, Susan R. McCouch, W. Richard McCombie
Software Mentions: 1
Published: about 10 years ago

10.1186/s13059-015-0722-1

CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Cited by: 14
Author(s): Liuyang Wang, Stefan H. Oehlers, Scott T. Espenschied, John F. Rawls, David M. Tobin, Dennis C. Ko
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.9314

Comparative analyses of 32 complete plastomes of Tef (<i>Eragrostis tef</i> ) accessions from Ethiopia: phylogenetic relationships and mutational hotspots
Cited by: 11
Author(s): Girma Eshetu Teshome, Yeshitila Mekbib, Guang‐Wan Hu, Zhizhong Li, Jin‐Ming Chen
Software Mentions: 1
Published: over 4 years ago

10.1016/j.isci.2021.102082

Telomere length dynamics in response to DNA damage in malaria parasites
Cited by: 3
Author(s): Jake Reed, Laura A. Kirkman, Björn F.C. Kafsack, Christopher E. Mason, Kirk W. Deitsch
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.43890

Spatiotemporal organization of branched microtubule networks
Cited by: 50
Author(s): Akanksha Thawani, Howard A. Stone, Joshua W. Shaevitz, Sabine Petry
Software Mentions: 1
Published: over 5 years ago

10.3390/pathogens9040317

Catalase and Ascorbate Peroxidase in Euglenozoan Protists
Cited by: 13
Author(s): Ingrid Škodová-Sveráková, Kristína Záhonová, Barbora Bučková, Zoltán Füssy, Vyacheslav Yurchenko, Julius Lukeš
Software Mentions: 1
Published: over 4 years ago

10.1186/s13059-019-1924-8

A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods
Cited by: 76
Author(s): Jill E. Moore, Henry E. Pratt, Michael J. Purcaro, Zhiping Weng
Software Mentions: 1
Published: almost 5 years ago

10.3390/pathogens9070532

Core Genome Multilocus Sequence Typing for Food Animal Source Attribution of Human Campylobacter jejuni Infections
Cited by: 18
Author(s): Chih-Hao Hsu, Lucas Harrison, Sampa Mukherjee, Errol Strain, Patrick F. McDermott, Qijing Zhang, Shaohua Zhao
Software Mentions: 1
Published: over 4 years ago

10.1186/s13071-015-0878-2

Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems
Cited by: 60
Author(s): Alexander Mathis, Jérôme Depaquit, Vít Dvořák, Holly C. Tuten, Anne‐Laure Bañuls, Petr Halada, Sonia Zapata, Véronique Lehrter, Kristýna Hlavačková, Jorian Prudhomme, Petr Volf, Denis Sereno, Christian Kaufmann, Valentin Pflüger, Francis Schaffner
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-5871-2

Exploring the molecular basis of neuronal excitability in a vocal learner
Cited by: 11
Author(s): Samantha R. Friedrich, Peter V. Lovell, Taylor Kaser, Claudio V. Mello
Software Mentions: 1
Published: over 5 years ago

10.1186/s12985-016-0655-7

Peering below the diffraction limit: robust and specific sorting of viruses with flow cytometry
Cited by: 18
Author(s): Shea T. Lance, David J. Sukovich, Kenneth M. Stedman, Adam R. Abate
Software Mentions: 1
Published: almost 8 years ago

10.15252/msb.20178102

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution
Cited by: 32
Author(s): Yolanda Schaerli, Ana María Jiménez Jiménez, José M. Duarte, Ljiljana Mihajlovic, Julien Renggli, Mark Isalan, James Sharpe, Andreas Wagner
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20209475

<scp>CRISPR</scp> ‐ <scp>TAPE</scp> : protein‐centric <scp>CRISPR</scp> guide design for targeted proteome engineering
Cited by: 2
Author(s): Daniel P. Anderson, Henry James Benns, Edward W. Tate, Matthew A. Child
Software Mentions: 1
Published: over 4 years ago

10.1093/gbe/evv040

Ancient Traces of Tailless Retropseudogenes in Therian Genomes
Cited by: 9
Author(s): Angela Noll, Carsten A. Raabe, Gennady Churakov, Jürgen Brosius, Jürgen Schmitz
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.26000

Ciliomotor circuitry underlying whole-body coordination of ciliary activity in the Platynereis larva
Cited by: 50
Author(s): Csaba Verasztó, Nobuo Ueda, Luis A Bezares-Calderón, Aurora Panzera, Elizabeth A. Williams, Réza Shahidi, Gáspár Jékely
Software Mentions: 1
Published: over 7 years ago

10.1093/gbe/evz062

Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage
Cited by: 3
Author(s): Jessica M. Storer, Jackson R. Mierl, Sarah A. Brantley, Breanna Threeton, Yahor Sukharutski, Lydia C. Rewerts, Corey P St Romain, Madeline M Foreman, Jasmine N. Baker, Jerilyn A. Walker, Joseph D. Orkin, Amanda D. Melin, Kimberley A. Phillips, Miriam K. Konkel, Mark A. Batzer
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.25392

A cellular mechanism for inverse effectiveness in multisensory integration
Cited by: 21
Author(s): Torrey L.S. Truszkowski, Oscar A Carrillo, Julia Bleier, Carolina M Ramirez-Vizcarrondo, Daniel L Felch, Molly McQuillan, Christopher P Truszkowski, Arseny S. Khakhalin, Carlos D. Aizenman
Software Mentions: 1
Published: over 7 years ago

10.1093/gbe/evz233

A Phylogenomic Approach to Clarifying the Relationship of Mesodinium within the Ciliophora: A Case Study in the Complexity of Mixed-Species Transcriptome Analyses
Cited by: 20
Author(s): Erica Lasek‐Nesselquist, Matthew D. Johnson
Software Mentions: 1
Published: about 5 years ago

10.1002/mgg3.50

Deciphering intrafamilial phenotypic variability by exome sequencing in a Bardet–Biedl family
Cited by: 14
Author(s): María González-del Pozo, Cristina Méndez-Vidal, Javier Santoyo-López, Alicia Vela-Boza, Nereida Bravo-Gil, Antonio Rueda, Luz García-Alonso, Carmen Vázquez-Marouschek, Joaquín Dopazo, Salud Borrego, Guillermo Antiñolo
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.26437

A novel twelve class fluctuation test reveals higher than expected mutation rates for influenza A viruses
Cited by: 109
Author(s): Matthew D. Pauly, Megan C. Procario, Adam S. Lauring
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules20058759

Development and Characterization of Transcription Factor Gene-Derived Microsatellite (TFGM) Markers in Medicago truncatula and Their Transferability in Leguminous and Non-Leguminous Species
Cited by: 23
Author(s): Wenxian Liu, Xitao Jia, Zhimin Liu, Zhengshe Zhang, Yanrong Wang, Wengang Xie
Software Mentions: 1
Published: over 9 years ago

10.1093/gigascience/gix074

Novel transcriptome resources for three scleractinian coral species from the Indo-Pacific
Cited by: 20
Author(s): Carly D. Kenkel, Line K. Bay
Software Mentions: 1
Published: about 7 years ago

10.1186/s13100-018-0115-6

Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis
Cited by: 10
Author(s): Cody J. Steely, Jasmine N. Baker, Jerilyn A. Walker, Charles D. Loupe, Mark A. Batzer
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-13-6

RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug
Cited by: 114
Author(s): Praveen Mamidala, Asela J. Wijeratne, Saranga Wijeratne, Karl Kornacker, Babu Sudhamalla, Loren J. Rivera-Vega, Andrew Hoelmer, Tea Meulia, Susan C. Jones, Omprakash Mittapalli
Software Mentions: 1
Published: almost 13 years ago

10.18632/aging.101180

Adaptive sequence convergence of the tumor suppressor ADAMTS9 between small-bodied mammals displaying exceptional longevity
Cited by: 9
Author(s): Matthew J Lambert, Christine V. Portfors
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2156-10-82

Validation of pooled genotyping on the Affymetrix 500 k and SNP6.0 genotyping platforms using the polynomial-based probe-specific correction
Cited by: 7
Author(s): Ramani Anantharaman, Fook Tim Chew
Software Mentions: 1
Published: almost 15 years ago

10.1038/micronano.2017.72

CAD/CAM for scalable nanomanufacturing: A network-based system for hybrid 3D printing
Cited by: 5
Author(s): Hae-Sung Yoon, Kang-In Lee, Ki-Hwan Jang, Chung-Soo Kim, Hyunseo Park, Daewook Kim, Kunwoo Lee, Sangkee Min
Software Mentions: 1
Published: about 7 years ago

10.1111/imcb.12199

Genetic regulation of antibody responsiveness to immunization in substrains of <scp>BALB</scp>/c mice
Cited by: 10
Author(s): Hazel C. Poyntz, Angela Jones, Ruy Jáuregui, Wayne Young, Aurélie Gestin, Anna Mooney, Olivier Lamiable, Eric Altermann, Alfonso Schmidt, Olivier Gasser, Laura S. Weyrich, Christopher J. Jolly, Michelle A. Linterman, Graham Le Gros, Edwin D. Hawkins, Elizabeth Forbes-Blom
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.03198

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
Cited by: 167
Author(s): Daniela Pignatta, Robert M. Erdmann, Elias Scheer, Colette L. Picard, George W. Bell, Mary Gehring
Software Mentions: 1
Published: over 10 years ago

10.1007/s13280-016-0864-8

Transitions in high-Arctic vegetation growth patterns and ecosystem productivity tracked with automated cameras from 2000 to 2013
Cited by: 42
Author(s): Andreas Westergaard‐Nielsen, Magnus Lund, Stine Højlund Pedersen, Niels Martin Schmidt, Stephen Klosterman, Jakob Abermann, Birger Ulf Hansen
Software Mentions: 1
Published: almost 8 years ago

10.3390/mi11040435

Low-Cost Battery-Powered and User-Friendly Real-Time Quantitative PCR System for the Detection of Multigene
Cited by: 14
Author(s): Junru An, Yangyang Jiang, Bing Shi, Di Wu, Wenming Wu
Software Mentions: 1
Published: over 4 years ago

10.1074/jbc.RA120.014030

Adaptation induced by self-targeting in a type I-B CRISPR-Cas system
Cited by: 5
Author(s): Aris-Edda Stachler, Julia Wörtz, Omer S. Alkhnbashi, Israela Turgeman-Grott, R. W. Smith, Thorsten Allers, Rolf Backofen, Uri Gophna, Anita Marchfelder
Software Mentions: 1
Published: about 4 years ago

10.1242/jcs.242909

Mechano-responsiveness of fibrillar adhesions on stiffness-gradient gels
Cited by: 25
Author(s): Nuria Barber-Pérez, Μαρία Γεωργιάδου, Camilo Guzmán, Aleksi Isomursu, Hellyeh Hamidi, Johanna Ivaska
Software Mentions: 1
Published: almost 5 years ago

10.1098/rsob.160311

Deterministic versus stochastic model of reprogramming: new evidence from cellular barcoding technique
Cited by: 11
Author(s): Anastasia Yunusova, Veniamin Fishman, Gennady V. Vasiliev, Nariman Battulin
Software Mentions: 1
Published: over 7 years ago

10.3390/jcm8060798

Metabolomic Investigation of β-Thalassemia in Chorionic Villi Samples
Cited by: 10
Author(s): Giovanni Monni, Federica Murgia, Valentina Corda, C. Peddes, Ambra Iuculano, Laura Tronci, Antonella Balsamo, Luigi Atzori
Software Mentions: 1
Published: over 5 years ago

10.1111/jeb.13773

Viral susceptibility across host species is largely independent of dietary protein to carbohydrate ratios
Cited by: 8
Author(s): Katherine E Roberts, Ben Longdon
Software Mentions: 1
Published: over 3 years ago

10.1007/s00248-012-0043-9

Quality-Score Refinement of SSU rRNA Gene Pyrosequencing Differs Across Gene Region for Environmental Samples
Cited by: 20
Author(s): Kara B. De León, Bradley D. Ramsay, Matthew W. Fields
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1000248

Independent Regulation of Reovirus Membrane Penetration and Apoptosis by the μ1 φ Domain
Cited by: 78
Author(s): Pranav Danthi, Caroline M. Coffey, John S. L. Parker, Ty W. Abel, Terence S. Dermody
Software Mentions: 1
Published: almost 16 years ago

10.1111/1751-7915.12154

Cytometric patterns reveal growth states of <scp> <i>S</i> </scp> <i>hewanella putrefaciens</i>
Cited by: 7
Author(s): Susanne Melzer, Gudrun Winter, Kathrin Jäger, Thomas Hübschmann, Gerd Hause, Frank Syrowatka, Hauke Harms, Attila Tárnok, Susann Müller
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1008080

Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies
Cited by: 55
Author(s): Ludmila Perelygina, Min Hsin Chen, Suganthi Suppiah, Adebola Adebayo, Emily Abernathy, Morna J. Dorsey, Lionel Bercovitch, Kenneth Paris, Kevin P. White, Alfons Krol, Julie Dhossche, I. Yu. Torshin, Natalie Saini, Leszek J. Klimczak, Dmitry A. Gordenin, Andrey Zharkikh, Stanley А. Plotkin, Kathleen E. Sullivan, Joseph P. Icenogle
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1008793

Distinct disease features in chimpanzees infected with a precore HBV mutant associated with acute liver failure in humans
Cited by: 4
Author(s): Zhaochun Chen, Ronald E. Engle, Chen‐Hsiang Shen, Huaying Zhao, Peter Schuck, Emily J. Danoff, Hanh Nguyen, Norihisa Nishimura, Kevin W. Bock, Ian N. Moore, Peter D. Kwong, Robert H. Purcell, Sugantha Govindarajan, Patrizia Farci
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1009147

Mutations altering acetylated residues in the CTD of HIV-1 integrase cause defects in proviral transcription at early times after integration of viral DNA
Cited by: 20
Author(s): Shelby Winans, Stephen P. Goff
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2156-13-21

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland
Cited by: 123
Author(s): Brian K. Meredith, F. Kearney, Emma K. Finlay, Daniel G. Bradley, Alan G. Fahey, D.P. Berry, David J. Lynn
Software Mentions: 1
Published: over 12 years ago

10.1098/rspb.2020.0270

Genetic architecture of a key reproductive isolation trait differs between sympatric and non-sympatric sister species of Lake Victoria cichlids
Cited by: 12
Author(s): Anna F. Feller, Marcel P. Haesler, Catherine L. Peichel, Ole Seehausen
Software Mentions: 1
Published: over 4 years ago

10.1073/pnas.2004722117

The small GTPase MglA together with the TPR domain protein SgmX stimulates type IV pili formation in <i>M. xanthus</i>
Cited by: 19
Author(s): Anna Potapova, Luís António Menezes Carreira, Lotte Søgaard‐Andersen
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2148-14-35

An evolutionary ratchet leading to loss of elongation factors in eukaryotes
Cited by: 7
Author(s): Gemma C. Atkinson, Anton Kuzmenko, Ivan Chicherin, Axel Soosaar, Tanel Tenson, Martin Carr, Piotr Kamenski, Vasili Hauryliuk
Software Mentions: 1
Published: almost 11 years ago

10.1098/rsos.170147

Global biogeographic patterns in bipolar moss species
Cited by: 44
Author(s): Elisabeth M. Biersma, Jennifer A. Jackson, Jaakko Hyvönen, Satu Koskinen, Katrin Linse, Howard Griffiths, Peter Convey
Software Mentions: 1
Published: over 7 years ago

10.1186/s12958-018-0399-x

Associations between the maternal circulating lipid profile in pregnancy and fetal imprinted gene alleles: a cohort study
Cited by: 9
Author(s): Clive J. Petry, Albert Koulman, Liangjian Lu, Benjamin Jenkins, Samuel Furse, Philippa Prentice, Lee Matthews, Ieuan A. Hughes, Carlo L. Acerini, Ken K. Ong, David B. Dunger
Software Mentions: 1
Published: about 6 years ago

10.1016/j.mex.2020.100883

Pipeline for the removal of hardware related artifacts and background noise for Raman spectroscopy
Cited by: 9
Author(s): Christian J F Bertens, Shuo Zhang, Roel J. Erckens, Frank J H M van den Biggelaar, Tos T. J. M. Berendschot, Carroll A.B. Webers, Rudy M.M.A. Nuijts, Marlies Gijs
Software Mentions: 1
Published: almost 5 years ago

10.1097/MD.0000000000020057

Gout inheritance in an extended Chinese family analyzed by whole-exome sequencing
Cited by: 0
Author(s): Peng Yang, Xuenan Pi, Tony N. Marion, Jing Wang, Gang Wang, Yan Xie, Dan Xie, Yi Liu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12936-020-03510-3

Population genetic analysis of the Plasmodium falciparum circumsporozoite protein in two distinct ecological regions in Ghana
Cited by: 4
Author(s): Elikplim A Amegashie, Lucas Amenga-Etego, Courage Adobor, Peter Ogoti, Kevin Mbogo, Alfred Amambua-Ngwa, Anita Ghansah
Software Mentions: 1
Published: almost 4 years ago

10.26508/lsa.201800029

Chronic platelet-derived growth factor receptor signaling exerts control over initiation of protein translation in glioma
Cited by: 5
Author(s): Shuang Zhou, Vicky A. Appleman, Christopher M. Rose, Hyun Jung Jun, Jianfeng Yang, Yue Zhou, Roderick T. Bronson, Steven P. Gygi, Al Charest
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36440

Ciliary and rhabdomeric photoreceptor-cell circuits form a spectral depth gauge in marine zooplankton
Cited by: 29
Author(s): Csaba Verasztó, Martin Gühmann, Honglei Jia, Vinoth Babu Veedin Rajan, Luis A Bezares-Calderón, Cristina Piñeiro-Lopez, Nadine Randel, Réza Shahidi, Nico K. Michiels, Shozo Yokoyama, Kristin Tessmar-Raible, Gáspár Jékely
Software Mentions: 1
Published: over 6 years ago

10.3390/life11060540

Mitogenomics and Evolutionary History of Rodent Whipworms (Trichuris spp.) Originating from Three Biogeographic Regions
Cited by: 0
Author(s): Jan Petružela, Alexis Ribas, Joëlle Goüy de Bellocq
Software Mentions: 1
Published: over 3 years ago

10.1038/srep14471

Renoprotective effect of long acting thioredoxin by modulating oxidative stress and macrophage migration inhibitory factor against rhabdomyolysis-associated acute kidney injury
Cited by: 39
Author(s): Kimiaki Nishida, Hiroshi Watanabe, Shigeru Ogaki, Azusa Kodama, Ryota Tanaka, Tadashi Imafuku, Yu Ishima, Victor Tuan Giam Chuang, Masao Toyoda, Masumi Kondoh, Qiong Wu, Masafumi Fukagawa, Masaki Otagiri, Toru Maruyama
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.36157

Histone H3 threonine 11 phosphorylation by Sch9 and CK2 regulates chronological lifespan by controlling the nutritional stress response
Cited by: 26
Author(s): Shi-Hwan Oh, Tamaki Suganuma, Madelaine Gogol, Jerry L. Workman
Software Mentions: 1
Published: over 6 years ago

10.1038/srep21304

Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms
Cited by: 39
Author(s): Om Singh Rathore, Alexandra Faustino, Pedro Prudêncio, Petra Van Damme, Cymon J. Cox, Rui Gonçalo Martinho
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27425

Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing
Cited by: 41
Author(s): Xin Ma, Yongcai Fu, Xiaoyan Zhao, Li‐Yun Jiang, Zuofeng Zhu, Ping Gu, Wenying Xu, Zhen Su, Chuanqing Sun, Lubin Tan
Software Mentions: 1
Published: over 8 years ago

10.1038/srep40054

Epileptiform activity in the mouse visual cortex interferes with cortical processing in connected areas
Cited by: 7
Author(s): Luigi Petrucco, Enrico Pracucci, Marco Brondi, Gian Michele Ratto, Silvia Landi
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep41689

Galectin-3 released in response to traumatic brain injury acts as an alarmin orchestrating brain immune response and promoting neurodegeneration
Cited by: 104
Author(s): Ping K. Yip, Alejandro Carrillo-Jiménez, Paul T. King, Anna Vilalta, Koji Nomura, Chalmers C. Chau, Alexander Michael Scott Egerton, Zhuo-Hao Liu, Ashray Jayaram Shetty, Jordi L. Tremoleda, Meirion Davies, Tomas Deierborg, John V. Priestley, Guy C. Brown, Adina T. Michael‐Titus, José L. Venero, Miguel Ángel Burguillos
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2148-9-258

Genomic taxonomy of vibrios
Cited by: 151
Author(s): Cristiane C. Thompson, Ana Carolina Paulo Vicente, Rangel Celso Souza, Ana Tereza Ribeiro de Vasconcelos, Tammi Camilla Vesth, Nelson Alves, David W. Ussery, Tetsuya Iida, Fl Thompson
Software Mentions: 1
Published: about 15 years ago

10.1038/s41598-017-00414-2

Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii
Cited by: 78
Author(s): Indu Khatri, Rajul Tomar, K. Ganesan, Gandham S. Prasad, S. Subramanian
Software Mentions: 1
Published: over 7 years ago

10.3390/life10080134

The Ancient History of Peptidyl Transferase Center Formation as Told by Conservation and Information Analyses
Cited by: 13
Author(s): Francisco Prosdocimi, Gabriel S. Zamudio, Miryam Palacios-Pérez, Sávio Torres de Farías, Marco V. José
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-08236-y

A novel missense variant in the nuclear localization signal of POU4F3 causes autosomal dominant non-syndromic hearing loss
Cited by: 17
Author(s): Yi-Hong Lin, Yi‐Hsin Lin, Yingchang Lu, Tien‐Chen Liu, Chien‐Yu Chen, Chuan‐Jen Hsu, Pei‐Lung Chen
Software Mentions: 1
Published: over 7 years ago

10.3390/life8030025

Bioinformatic Workflows for Generating Complete Plastid Genome Sequences—An Example from Cabomba (Cabombaceae) in the Context of the Phylogenomic Analysis of the Water-Lily Clade
Cited by: 12
Author(s): Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-13278-3

EEG Transients in the Sigma Range During non-REM Sleep Predict Learning in Dogs
Cited by: 22
Author(s): Ivaylo Borislavov Iotchev, Anna Kis, Róbert Bódizs, Gilles van Luijtelaar, Enikő Kubinyi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13578-8

Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms
Cited by: 15
Author(s): Takuro Nakayama, Yuji Inagaki
Software Mentions: 1
Published: about 7 years ago

10.1042/BSR20202287

Genomic islands and the evolution of livestock-associated<i>Staphylococcus aureus</i>genomes
Cited by: 6
Author(s): Relangi Tulasi Rao, Shivani Sharma, N. Sivakumar, K. Jayakumar
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-17610-9

Resting state brain networks in the prairie vole
Cited by: 16
Author(s): Juan José Ortiz, Wendy Portillo, Raúl G. Paredes, Larry J. Young, Sarael Alcauter
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19776-2

Downy mildew symptoms on grapevines can be reduced by volatile organic compounds of resistant genotypes
Cited by: 34
Author(s): Valentina Lazazzara, Christoph Bueschl, Alexandra Parich, I. Pertot, Rainer Schuhmacher, Michele Perazzolli
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20713-6

Effect of tube current on computed tomography radiomic features
Cited by: 86
Author(s): D. Mackin, Rachel B. Ger, Cristina T. Dodge, Xenia Fave, Pai Chun, Lifei Zhang, Jinzhong Yang, Steve Bache, Charles Dodge, A. Kyle Jones, Laurence Edward Court
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12915-016-0325-7

Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Cited by: 16
Author(s): Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
Software Mentions: 1
Published: almost 8 years ago

10.1155/2017/4180703

Cervical Cancer Cell Line Secretome Highlights the Roles of Transforming Growth Factor-Beta-Induced Protein ig-h3, Peroxiredoxin-2, and NRF2 on Cervical Carcinogenesis
Cited by: 37
Author(s): Georgia Kontostathi, Jérôme Zoidakis, Manousos Makridakis, Vasiliki Lygirou, George Mermelekas, Theofilos Papadopoulos, Konstantinos Vougas, Alexios Vlamis-Gardikas, Peter Drakakis, Dimitrios Loutradis, Antonia Vlahou, Nicholas P. Anagnou, Kalliopi I. Pappa
Software Mentions: 1
Published: almost 8 years ago

10.1128/JVI.01972-15

Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence
Cited by: 35
Author(s): Charles N. Agoti, James R. Otieno, Mwanajuma Ngama, Alexander G. Mwihuri, Graham F. Medley, Patricia A. Cane, D. James Nokes
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-019-38581-z

Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR
Cited by: 22
Author(s): Steve Lefever, Ali Rihani, Joni Van der Meulen, Filip Pattyn, Tom Van Maerken, Jo Van Dorpe, Jan Hellemans, Jo Vandesompele
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42918-z

The influence of habitual consumption of chewing gums in the outcome of masticatory performance tests using two-coloured chewing gums
Cited by: 2
Author(s): Gustavo Vaccaro, José Ignacio Peláez, José Antonio Gil-Montoya
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44560-1

The Effects of Switching Non-Spatial Attention During Conversational Turn Taking
Cited by: 6
Author(s): Guosheng Lin, Simon Carlile
Software Mentions: 1
Published: over 5 years ago

10.1155/2017/5732642

Human Brain Mapping of Visual Script Familiarity between Phonological and Logographic Language: 3 T Functional MRI Study
Cited by: 1
Author(s): Nambeom Kim, Jong-Ho Kim, Chang-Ki Kang, Chan-A Park, Mi-Ra Lim, Young-Bo Kim, Byung-Gee Bak
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-46137-4

Whole-Exome Sequencing of Nasopharyngeal Carcinoma Families Reveals Novel Variants Potentially Involved in Nasopharyngeal Carcinoma
Cited by: 30
Author(s): Guoqin Yu, Wei-Li Hsu, Anna E. Coghill, Kelly J. Yu, Cheng-Ping Wang, Pei‐Jen Lou, Zhiwei Liu, Kristie Jones, Aurélie Vogt, Mingyi Wang, Sam M. Mbulaiteye, Hao Hui Chen, Joseph F. Boland, Meredith Yeager, Scott R. Diehl, Chien Jen Chen, Allan Hildesheim, Alisa M. Goldstein
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-54675-0

Transcriptome changes in undifferentiated Caco-2 cells exposed to food-grade titanium dioxide (E171): contribution of the nano- and micro- sized particles
Cited by: 19
Author(s): Héloïse Proquin, Marloes C. M. Jonkhout, Marlon J. Jetten, Henk Van Loveren, Theo M. de Kok, Jacob J. Briedé
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60167-3

Holothurians have a reduced GPCR and odorant receptor-like repertoire compared to other echinoderms
Cited by: 12
Author(s): Nathalie Marquet, João C. R. Cardoso, Bruno Louro, Stefan A. Fernandes, Sandra C. Silva, Adelino V. M. Canário
Software Mentions: 1
Published: over 4 years ago

10.1007/s10237-021-01472-2

Initial mechanical conditions within an optimized bone scaffold do not ensure bone regeneration – an in silico analysis
Cited by: 12
Author(s): Camille Perier-Metz, Georg N. Duda, Sara Checa
Software Mentions: 1
Published: over 3 years ago

10.1242/bio.029439

Contrast thresholds reveal different visual masking functions in humans and praying mantises
Cited by: 1
Author(s): Ghaith Tarawneh, Vivek Nityananda, Ronny Rosner, Steven Errington, William N.P. Herbert, Sandra Arranz-Paraíso, Natalie Busby, Jimmy Tampin, Jenny C. A. Read, Ignacio Serrano‐Pedraza
Software Mentions: 1
Published: over 6 years ago

10.1186/1752-0509-8-45

Simulations of pattern dynamics for reaction-diffusion systems via SIMULINK
Cited by: 9
Author(s): Kaier Wang, Moira L. Steyn-Ross, D. Alistair Steyn-Ross, Marcus T. Wilson, Jamie Sleigh, Yasuyuki Shiraishi
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms19071962

Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers
Cited by: 55
Author(s): Tao Zhou, Jian Wang, Yafei Jia, Wenli Li, Fusheng Xu, Xumei Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20092343

Computational Aminoacyl-tRNA Synthetase Library Design for Photocaged Tyrosine
Cited by: 28
Author(s): Tobias Baumann, Matthias Hauf, Florian Richter, Suki Albers, Andreas Möglich, Zoya Ignatova, Nediljko Budiša
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21093216

Hybridization Chain Reactions Targeting the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Cited by: 13
Author(s): Tingfan Wu, Chia Chen Chang, Ching-Hsu Yang, Wan-Ying Lin, Tan Joy Ee, Chii‐Wann Lin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-75064-y

Transcriptomic and life history responses of the mayfly Neocloeon triangulifer to chronic diel thermal challenge
Cited by: 4
Author(s): Hsuan Chou, Dereje D. Jima, David H. Funk, John K. Jackson, Bernard W. Sweeney, David B. Buchwalter
Software Mentions: 1
Published: about 4 years ago

10.1186/s13104-020-05287-9

Rapid and economical drug resistance profiling with Nanopore MinION for clinical specimens with low bacillary burden of Mycobacterium tuberculosis
Cited by: 11
Author(s): Wai Sing Chan, Chun Hang Au, Yvonne Chung, Ho-fung Leung, Dona N. Ho, Ella Lai‐Ming Wong, Tak Wah Lam, Tsun Leung Chan, Edmond Shiu Kwan, Bone Siu-Fai Tang
Software Mentions: 1
Published: about 4 years ago

10.1186/s13104-021-05590-z

Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep
Cited by: 1
Author(s): Kelly E. Williams, Damian M. Menning, Eric J. Wald, Sandra L. Talbot, Kumi L. Rattenbury, Laura R. Prugh
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-019-2909-z

Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ
Cited by: 4
Author(s): Dace Ruklisa, Alvis Brāzma, Kārlis Čerāns, Thomas Schlitt, Juris Vīksna
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85153-1

Acute and chronic effects of Titanium dioxide (TiO2) PM1 on honey bee gut microbiota under laboratory conditions
Cited by: 10
Author(s): Giulia Papa, Gennaro Di Prisco, Giulia Spini, Edoardo Puglisi, Ilaria Negri
Software Mentions: 1
Published: over 3 years ago