pypi: scipy | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1008340

An estimator of first coalescent time reveals selection on young variants and large heterogeneity in rare allele ages among human populations
Cited by: 16
Author(s): Alexander Platt, Alyssa Pivirotto, Jared Knoblauch, Jody Hey
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1006391

Genetic Evidence for Elevated Pathogenicity of Mitochondrial DNA Heteroplasmy in Autism Spectrum Disorder
Cited by: 50
Author(s): Yiqin Wang, Martin Picard, Zhenglong Gu
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pntd.0005465

VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations
Cited by: 12
Author(s): Hidayat Trimarsanto, Ernest Diez Benavente, Rintis Noviyanti, Retno A. S. Utami, Leily Trianty, Zuleima Pava, Sisay Getachew, Jung-Yeon Kim, Youn‐Kyoung Goo, Sonam Wangchuck, Yaobao Liu, Qi Gao, Simone Dowd, Qin Cheng, Taane G. Clark, Ric N. Price, Sarah Auburn
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0118438

N6-Adenosine Methylation in MiRNAs
Cited by: 114
Author(s): Tea Berulava, Sven Rahmann, Katrin Rademacher, L. Klein-Hitpass, Bernhard Horsthemke
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0171744

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems
Cited by: 45
Author(s): Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0222484

The dialogue between protozoa and bacteria in a microfluidic device
Cited by: 17
Author(s): Anna Gaines, Miranda C. Ludovice, Jie Xu, Marc G. Zanghi, Richard J. Meinersmann, M. E. Berrang, Wayne Daley, Douglas F. Britton
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0252345

Inferring spikes from calcium imaging in dopamine neurons
Cited by: 13
Author(s): Weston Fleming, Sean Jewell, Ben Engelhard, Daniela Witten, Ilana B. Witten
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0001751

Automatic Physiological Waveform Processing for fMRI Noise Correction and Analysis
Cited by: 14
Author(s): Daniel J. Kelley, Terrence R. Oakes, Lawrence L. Greischar, Moo K. Chung, John M. Ollinger, Andrew L. Alexander, Steven E. Shelton, Ned H. Kalin, Richard J. Davidson
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0205943

CLEESE: An open-source audio-transformation toolbox for data-driven experiments in speech and music cognition
Cited by: 15
Author(s): Juan José Burred, Emmanuel Ponsot, Louise Goupil, Marco Liuni, Jean‐Julien Aucouturier
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0156963

Dynamics of Crowded Vesicles: Local and Global Responses to Membrane Composition
Cited by: 28
Author(s): Daniel A. Holdbrook, Roland G. Huber, Thomas J. Piggot, Peter J. Bond, Syma Khalid
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0024051

A Global Clustering Algorithm to Identify Long Intergenic Non-Coding RNA - with Applications in Mouse Macrophages
Cited by: 27
Author(s): Lana X. Garmire, David Garmire, Wendy Huang, Joyee Yao, Christopher K. Glass, Shankar Subramaniam
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0155574

Cognitive and Ocular Factors Jointly Determine Pupil Responses under Equiluminance
Cited by: 119
Author(s): Tomas Knapen, Jan Willem de Gee, Jan W. Brascamp, Stijn Adriaan Nuiten, Sylco S. Hoppenbrouwers, Jan Theeuwes
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0227485

A new process to measure postural sway using a Kinect depth camera during a Sensory Organisation Test
Cited by: 10
Author(s): Sean Maudsley-Barton, Moi Hoon Yap, Anthony Bukowski, Richard Mills, Jamie S. McPhee
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0239140

Implementing Fuzzy AHP and FUCOM to evaluate critical success factors for sustained academic quality assurance and ABET accreditation
Cited by: 13
Author(s): Naim Ahmad, Ayman Qahmash
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0126115

Impact of the H275Y and I223V Mutations in the Neuraminidase of the 2009 Pandemic Influenza Virus In Vitro and Evaluating Experimental Reproducibility
Cited by: 44
Author(s): Éric Paradis, Lady Tatiana Pinilla, Benjamin P. Holder, Yacine Abed, Guy Boivin, C. Beauchemin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0031886

Deep Sequencing for the Detection of Virus-Like Sequences in the Brains of Patients with Multiple Sclerosis: Detection of GBV-C in Human Brain
Cited by: 29
Author(s): John D. Kriesel, Maurine R. Hobbs, Brandt Jones, Brett Milash, Rashed M. Nagra, Kael F. Fischer
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0081177

Activity in a Premotor Cortical Nucleus of Zebra Finches Is Locally Organized and Exhibits Auditory Selectivity in Neurons but Not in Glia
Cited by: 19
Author(s): Michael Hubert Graber, Fritjof Helmchen, Richard H. R. Hahnloser
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0198463

Discovery of gene regulatory elements through a new bioinformatics analysis of haploid genetic screens
Cited by: 0
Author(s): Bansari Patel, Andres M. Lebensohn, Ganesh V. Pusapati, Jan E. Carette, Julia Salzman, Rajat Rohatgi
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0222881

Framework for rational donor selection in fecal microbiota transplant clinical trials
Cited by: 34
Author(s): Claire Duvallet, Caroline Zellmer, Pratik Panchal, Shrish Budree, Majdi Osman, Eric J. Alm
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0219481

The role of oxidant stress and gender in the erythrocyte arginine metabolism and ammonia management in patients with type 2 diabetes
Cited by: 20
Author(s): Martha Lucinda Contreras-Zentella, Lourdes Sánchez-Sevilla, Juan Antonio Suárez‐Cuenca, Marisela Olguín-Martínez, Martha G. Alatriste‐Contreras, Norberto García-García, Lorena Orozco, Rolando Hernández‐Muñoz
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0013981

The Cerebellar Nodulus/Uvula Integrates Otolith Signals for the Translational Vestibulo-Ocular Reflex
Cited by: 33
Author(s): Mark F. Walker, Jing Tian, Xiaoyan Shan, Rafael J. Tamargo, Howard S. Ying, David S. Zee
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0190101

Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy
Cited by: 3
Author(s): Stefania Salvatore, Diana Domańska, Mollie Wood, Hedvig Nordeng, Geir Kjetil Sandve
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0143196

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
Cited by: 27
Author(s): Florian Wagner
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0251172

A biochemical mechanism for time-encoding memory formation within individual synapses of Purkinje cells
Cited by: 2
Author(s): Ayush Mandwal, Javier G. Orlandi, Christoph Simon, Jörn Davidsen
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11071023

ANGPT2 and NOS3 Polymorphisms and Clinical Outcome in Advanced Hepatocellular Carcinoma Patients Receiving Sorafenib
Cited by: 23
Author(s): Giorgia Marisi, Elisabetta Petracci, Francesco Raimondi, Luca Faloppi, Francesco Giuseppe Foschi, Gianfranco Lauletta, M. Iavarone, Matteo Canale, Martina Valgiusti, Luca M. Neri, Paola Ulivi, Giulia Orsi, Giulia Rovesti, Ranka Vukotic, Fabio Conti, Alessandro Cucchetti, Giorgio Ercolani, Kalliopi Andrikou, Stefano Cascinu, Mario Scartozzi, Andrea Casadei‐Gardini
Software Mentions: 2
Published: over 5 years ago

10.1016/j.cell.2020.01.010

Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody
Cited by: 89
Author(s): Philipp Schommers, Henning Gruell, Morgan E. Abernathy, My-Kim Tran, Adam S. Dingens, Harry B. Gristick, Christopher O. Barnes, Till Schoofs, Maike Schlotz, Kanika Vanshylla, Christoph Kreer, Daniela Weiland, Udo Holtick, Christof Scheid, Markus M. Valter, Marit J. van Gils, Rogier W. Sanders, Jörg Janne Vehreschild, Oliver A. Cornely, Clara Lehmann, Gerd Fätkenheuer, Michael S. Seaman, Jesse D Bloom, Pamela J. Björkman, Florian Klein
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12964-020-00626-6

Orchestration of signaling by structural disorder in class 1 cytokine receptors
Cited by: 19
Author(s): Pernille Seiffert, Katrine Bugge, Mads Nygaard, Gitte W. Haxholm, Jacob H. Martinsen, Martin Nors Pedersen, Lise Arleth, Wouter Boomsma, Birthe B. Kragelund
Software Mentions: 2
Published: about 4 years ago

10.1186/s12964-021-00770-7

The tyrosine phosphatase SHP2 increases robustness and information transfer within IL-6-induced JAK/STAT signalling
Cited by: 21
Author(s): Jessica Fiebelkow, André Guendel, Beate Guendel, Nora Mehwald, Tomasz Jetka, Michał Komorowski, Steffen Waldherr, Fred Schaper, Anna Dittrich
Software Mentions: 2
Published: about 3 years ago

10.1186/1752-153X-6-144

Python algorithms in particle tracking microrheology
Cited by: 8
Author(s): Timo Maier, Tamás Haraszti
Software Mentions: 2
Published: almost 12 years ago

10.1038/s42003-021-01847-2

Water orientation and dynamics in the closed and open influenza B virus M2 proton channels
Cited by: 15
Author(s): Martin D. Gelenter, Venkata S. Mandala, Michiel J.M. Niesen, Dina A. Sharon, Aurelio J. Dregni, Adam P. Willard, Mei Hong
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-01535-7

Fast automated detection of COVID-19 from medical images using convolutional neural networks
Cited by: 38
Author(s): Shuang Liang, Huixiang Liu, Yu Gu, Xiuhua Guo, Hongjun Li, Li Li, Zhiyuan Wu, Mengyang Li, Lixin Tao
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-020-01544-6

Rate volatility and asymmetric segregation diversify mutation burden in cells with mutator alleles
Cited by: 0
Author(s): Ian T. Dowsett, Jessica L. Sneeden, Branden J Olson, Jill McKay-Fleisch, Emma McAuley, Scott R. Kennedy, Alan J. Herr
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-021-01664-7

Synthetic promoters to induce immune-effectors into the tumor microenvironment
Cited by: 10
Author(s): Yariv Greenshpan, Omri Sharabi, Aner Ottolenghi, Avishag Cahana, Kiran Kundu, Ksenia M. Yegodayev, Moshe Elkabets, Roi Gazit, Angel Porgador
Software Mentions: 2
Published: almost 4 years ago

10.1155/2018/6367243

Understanding Dynamic Status Change of Hospital Stay and Cost Accumulation via Combining Continuous and Finitely Jumped Processes
Cited by: 1
Author(s): Yanqiao Zheng, Xiaobing Zhao, Xiaoqi Zhang
Software Mentions: 2
Published: over 6 years ago

10.1155/2017/1473287

A Multiscale Model for the World’s First Parasitic Disease Targeted for Eradication: Guinea Worm Disease
Cited by: 15
Author(s): Rendani Netshikweta, Winston Garira
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.csbj.2021.07.004

PySTACHIO: Python Single-molecule TrAcking stoiCHiometry Intensity and simulatiOn, a flexible, extensible, beginner-friendly and optimized program for analysis of single-molecule microscopy data
Cited by: 12
Author(s): Jack W Shepherd, Edward Higgins, Adam J. M. Wollman, Mark C. Leake
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.sbi.2018.01.009

Bringing diffuse X-ray scattering into focus
Cited by: 26
Author(s): Michael E. Wall, Alexander M. Wolff, James S. Fraser
Software Mentions: 2
Published: over 6 years ago

10.1016/j.devcel.2019.10.011

Lumen Expansion Facilitates Epiblast-Primitive Endoderm Fate Specification during Mouse Blastocyst Formation
Cited by: 54
Author(s): Allyson Quinn Ryan, Chii Jou Chan, François Graner, Takashi Hiiragi
Software Mentions: 2
Published: almost 5 years ago

10.3390/diagnostics11091650

A Radiomics Approach to Predict the Emergence of New Hepatocellular Carcinoma in Computed Tomography for High-Risk Patients with Liver Cirrhosis
Cited by: 1
Author(s): Eric Tietz, Daniel Truhn, Gustav Müller‐Franzes, Marie‐Luise Berres, Karim Hamesch, Sven A. Lang, Christiane Kühl, Philipp Bruners, Maximilian Schulze-Hagen
Software Mentions: 2
Published: about 3 years ago

10.3390/diagnostics11061047

A Cascaded Neural Network for Staging in Non-Small Cell Lung Cancer Using Pre-Treatment CT
Cited by: 7
Author(s): Ji Eun Choi, H. Cho, Junmo Kwon, Ho Yun Lee, Hyunjin Park
Software Mentions: 2
Published: over 3 years ago

10.1016/j.eclinm.2021.100774

Enoxaparin is associated with lower rates of mortality than unfractionated Heparin in hospitalized COVID-19 patients
Cited by: 29
Author(s): Colin Pawlowski, AJ Venkatakrishnan, Christian Kirkup, Gabriela Berner, Arjun Puranik, John C. O’Horo, Andrew D. Badley, Venky Soundararajan
Software Mentions: 2
Published: over 3 years ago

10.3390/e20100724

Making the Coupled Gaussian Process Dynamical Model Modular and Scalable with Variational Approximations
Cited by: 5
Author(s): Dmytro Velychko, Benjamin Knopp, Dominik Endres
Software Mentions: 2
Published: about 6 years ago

10.1186/s41747-020-00154-5

Inverse Laplace transform and multiexponential fitting analysis of T2 relaxometry data: a phantom study with aqueous and fat containing samples
Cited by: 10
Author(s): Georgios Ioannidis, Katerina Nikiforaki, Georgios Kalaitzakis, Apostolos H. Karantanas, Kostas Marias, Thomas G. Maris
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/6671367

Impact of Buzhong Yiqi Prescription on the Gut Microbiota of Patients with Obesity Manifesting Polycystic Ovarian Syndrome
Cited by: 8
Author(s): Zhexin Ni, Wen Cheng, Jie Ding, Ruipin Yao, Danying Zhang, Dongxia Zhai, Ling Zhou, Chaoqin Yu
Software Mentions: 2
Published: over 3 years ago

10.1111/febs.15314

On the evolution of the quality of macromolecular models in the PDB
Cited by: 14
Author(s): Dariusz Brzeziński, Zbigniew Dauter, Władek Minor, Mariusz Jaskólski
Software Mentions: 2
Published: over 4 years ago

10.3389/fnagi.2019.00300

Neural and Behavioral Effects of an Adaptive Online Verbal Working Memory Training in Healthy Middle-Aged Adults
Cited by: 11
Author(s): Mónica Emch, Isabelle Ripp, Qiong Wu, Igor Yakushev, Kathrin Koch
Software Mentions: 2
Published: about 5 years ago

10.3389/fnbeh.2018.00237

Human Vicarious Trial and Error Is Predictive of Spatial Navigation Performance
Cited by: 15
Author(s): Diogo Santos-Pata, Paul F. M. J. Verschure
Software Mentions: 2
Published: about 6 years ago

10.3389/fdata.2021.666712

Functional Structure in Production Networks
Cited by: 7
Author(s): Carolina Mattsson, Frank W. Takes, Eelke M. Heemskerk, Cees Diks, Gert Buiten, Albert Faber, P.M.A. Sloot
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2021.707749

Thermodynamic and Kinetic Modeling of Co-utilization of Glucose and Xylose for 2,3-BDO Production by Zymomonas mobilis
Cited by: 3
Author(s): Chao Wu, Ryan Spiller, Nancy Dowe, Yannick J. Bomble, Peter C. St. John
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.00778

Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study
Cited by: 16
Author(s): Ana Camila Alves de Araújo, Enzo Gabriel da Rocha Santos, Karina Santos Guedes de Sá, Viviane Kharine Teixeira Furtado, Fernanda Araújo dos Santos, Ramon Costa de Lima, Lane Viana Krejčová, Bruno Lopes Santos‐Lobato, Gustavo Pinto, André dos Santos Cabral, Anderson Belgamo, Bianca Callegari, Ana Francisca Rozin Kleiner, Anselmo de Athayde Costa e Silva, Givago da Silva Souza
Software Mentions: 2
Published: over 4 years ago

10.3389/fbioe.2019.00122

Monte Carlo Simulations for the Analysis of Non-linear Parameter Confidence Intervals in Optimal Experimental Design
Cited by: 19
Author(s): Niels Krausch, Tilman Barz, Annina Sawatzki, Mathis Gruber, Sarah Kamel, Peter Neubauer, Mariano Nicolás Cruz Bournazou
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.536389

The Distribution of Genes Associated With Regulated Cell Death Is Decoupled From the Mitochondrial Phenotypes Within Unicellular Eukaryotic Hosts
Cited by: 1
Author(s): Jérôme Teulière, Guillaume Bernard, Éric Bapteste
Software Mentions: 2
Published: about 4 years ago

10.3389/fcimb.2018.00246

Moderate Dietary Protein Restriction Optimized Gut Microbiota and Mucosal Barrier in Growing Pig Model
Cited by: 68
Author(s): Xiyue Chen, Peixia Song, Peixin Fan, Ting He, Devin R Jacobs, Crystal L Levesque, Lee J Johnston, Linbao Ji, Ning Ma, Yiqiang Chen, Jie Zhang, Jinshan Zhao, Xi Ma
Software Mentions: 2
Published: over 6 years ago

10.3389/fncom.2015.00139

Modeling the Influence of Ion Channels on Neuron Dynamics in Drosophila
Cited by: 12
Author(s): Sandra D Berger, Sharon Crook
Software Mentions: 2
Published: about 9 years ago

10.3389/fncom.2017.00048

Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function
Cited by: 279
Author(s): Michael Reimann, Max Nolte, Martina Scolamiero, Katharine Turner, Rodrigo Perin, Giuseppe Chindemi, Paweł Dłotko, Ran Levi, Kathryn Hess, Henry Markram
Software Mentions: 2
Published: over 7 years ago

10.3389/fncom.2017.00034

The Influence of Mexican Hat Recurrent Connectivity on Noise Correlations and Stimulus Encoding
Cited by: 2
Author(s): Robert K. Meyer, Josef Ladenbauer, Klaus Obermayer
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.00608

Genetic Diversity and Low Stratification of the Population of the United Arab Emirates
Cited by: 16
Author(s): Guan K. Tay, Andreas Henschel, Gihan Daw Elbait, Habiba S. Al Safar
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2016.00166

Time Hierarchies and Model Reduction in Canonical Non-linear Models
Cited by: 3
Author(s): Hannes Löwe, Andreas Kremling, Alberto Marı́n-Sanguino
Software Mentions: 2
Published: about 8 years ago

10.3389/fnhum.2020.559793

Collaboration Variability in Autism Spectrum Disorder
Cited by: 0
Author(s): Maria Blancas, Giovanni Maffei, Martí Sánchez-Fibla, Vasiliki Vouloutsi, Paul F. M. J. Verschure
Software Mentions: 2
Published: about 4 years ago

10.3389/fnhum.2019.00179

Ecological Momentary Assessment of Head Motion: Toward Normative Data of Head Stabilization
Cited by: 12
Author(s): Peter Hausamann, Martin Däumer, Paul R. MacNeilage, Stefan Glasauer
Software Mentions: 2
Published: over 5 years ago

10.3389/fncir.2014.00084

GABAergic and glycinergic inhibitory synaptic transmission in the ventral cochlear nucleus studied in VGAT channelrhodopsin-2 mice
Cited by: 22
Author(s): Ruili Xie, Paul B. Manis
Software Mentions: 2
Published: over 10 years ago

10.3389/fncir.2016.00032

Feed-Forward Propagation of Temporal and Rate Information between Cortical Populations during Coherent Activation in Engineered In Vitro Networks
Cited by: 24
Author(s): Thomas B. DeMarse, Longfa Pan, Sankaraleengam Alagapan, Gregory J. Brewer, Bruce C. Wheeler
Software Mentions: 2
Published: over 8 years ago

10.3389/fninf.2014.00003

ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research
Cited by: 47
Author(s): Luke Campagnola, Megan B. Kratz, Paul B. Manis
Software Mentions: 2
Published: almost 11 years ago

10.3389/fninf.2021.704627

Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry
Cited by: 4
Author(s): Thomas L. Athey, Jacopo Teneggi, Joshua T. Vogelstein, Daniel J. Tward, U. Müeller, Michael I. Miller
Software Mentions: 2
Published: over 3 years ago

10.3389/fneur.2020.00007

Prediction of Vestibular Dysfunction by Applying Machine Learning Algorithms to Postural Instability
Cited by: 19
Author(s): Teru Kamogashira, Chisato Fujimoto, Makoto Kinoshita, Yuichiro Kikkawa, Tatsuya Yamasoba, Shinichi Iwasaki
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnut.2021.648073

The Nutritional Efficacy of Chlorella Supplementation Depends on the Individual Gut Environment: A Randomised Control Study
Cited by: 7
Author(s): Yuichiro Nishimoto, Tatsuhiro Nomaguchi, Yoshiyuki Mori, Masaki Ito, Yuya Nakamura, Masaki Fujishima, S. Murakami, Takuji Yamada, Shinji Fukuda
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.627217

Plasma Metabolome Signature Indicative of BRCA1 Germline Status Independent of Cancer Incidence
Cited by: 1
Author(s): Judith Penkert, Andre Märtens, Martin Seifert, Bernd Auber, Katja Derlin, Ursula Hille-Betz, Philipp Hörmann, Norman Klopp, Jana Prokein, Lisa Schlicker, Frank Wacker, Hannah Wallaschek, Brigitte Schlegelberger, Karsten Hiller, Tim Ripperger, Thomas Illig
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.597486

A Urine-Based Liquid Biopsy Method for Detection of Upper Tract Urinary Carcinoma
Cited by: 11
Author(s): Yan Xu, Xin Ma, Xing Ai, Jiangping Gao, Yiming Liang, Qin Zhang, Tao Ma, Kaisheng Mao, Qiwen Zheng, Sizhen Wang, Yuchen Jiao, Xu Zhang, Hongzhao Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphar.2020.620724

Gut Microbiota and Related Metabolites Were Disturbed in Ulcerative Colitis and Partly Restored After Mesalamine Treatment
Cited by: 16
Author(s): Liang Dai, Yiming Tang, Wenjun Zhou, Yanqi Dang, Qian Sun, Zhipeng Tang, Meizhen Zhu, Guang Ji
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2020.612590

Searching for Errors in Models of Complex Dynamic Systems
Cited by: 1
Author(s): Dominik Kahl, Maik Kschischo
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2020.01012

Extracting Insights From Temporal Data by Integrating Dynamic Modeling and Machine Learning
Cited by: 5
Author(s): Richard Ballweg, Kristen A. Engevik, Marshall H. Montrose, Eitaro Aihara, Tongli Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fphys.2021.693015

Bayesian Calibration of Electrophysiology Models Using Restitution Curve Emulators
Cited by: 6
Author(s): Sam Coveney, Cesare Corrado, Jeremy E. Oakley, Richard Wilkinson, Steven Niederer, Richard H. Clayton
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2020.01038

Crop Photosynthetic Performance Monitoring Based on a Combined System of Measured and Modelled Chloroplast Electron Transport Rate in Greenhouse Tomato
Cited by: 2
Author(s): Wei Yu, Oliver Körner, Uwe Schmidt
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2019.00413

Eco-Friendly Iron-Humic Nanofertilizers Synthesis for the Prevention of Iron Chlorosis in Soybean (Glycine max) Grown in Calcareous Soil
Cited by: 44
Author(s): María Teresa Cieschi, Alexander Yu. Polyakov, В. А. Лебедев, Dmitry S. Volkov, D. А. Pankratov, А. А. Велигжанин, Irina V. Perminova, Juan J. Lucena
Software Mentions: 2
Published: over 5 years ago

10.3389/fpsyt.2019.00011

Morning Plasma Melatonin Differences in Autism: Beyond the Impact of Pineal Gland Volume
Cited by: 20
Author(s): Anna Maruani, Guillaume Dumas, Anita Beggiato, Nicolas Traut, Hugo Peyre, Alicia Cohen-Freoua, Frédérique Amsellem, Monique Elmaleh, David Germanaud, Jean‐Marie Launay, Thomas Bourgeron, Roberto Toro, Richard Delorme
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpsyt.2020.510366

Interactive Psychometrics for Autism With the Human Dynamic Clamp: Interpersonal Synchrony From Sensorimotor to Sociocognitive Domains
Cited by: 5
Author(s): Florence Baillin, Aline Lefebvre, Amandine Pedoux, Yann Beauxis, Denis A. Engemann, Anna Maruani, Frédérique Amsellem, J. A. Scott Kelso, Thomas Bourgeron, Richard Delorme, Guillaume Dumas
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpsyg.2021.604323

Cognitive and Motor Learning in Internally-Guided Motor Skills
Cited by: 2
Author(s): Krishn Bera, Anuj Shukla, Raju S. Bapi
Software Mentions: 2
Published: over 3 years ago

10.3389/frobt.2021.637301

Improved Continuum Joint Configuration Estimation Using a Linear Combination of Length Measurements and Optimization of Sensor Placement
Cited by: 2
Author(s): Levi Rupert, Timothy R. Duggan, Marc D. Killpack
Software Mentions: 2
Published: over 3 years ago

10.3389/fnsys.2016.00054

Oculomotor Remapping of Visual Information to Foveal Retinotopic Cortex
Cited by: 19
Author(s): Tomas Knapen, Jascha D. Swisher, Frank Tong, Patrick Cavanagh
Software Mentions: 2
Published: over 8 years ago

10.1186/gb-2014-15-7-r89

Host lifestyle affects human microbiota on daily timescales
Cited by: 707
Author(s): Lawrence A. David, Arne Materna, Jonathan Friedman, Maria I Campos-Baptista, Matthew Blackburn, Alessandra Perrotta, Susan E. Erdman, Eric J. Alm
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13059-019-1754-8

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts
Cited by: 43
Author(s): Ardalan Naseri, Xiaoming Liu, Kecong Tang, Shaojie Zhang, Degui Zhi
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-019-1815-z

Quantitative MNase-seq accurately maps nucleosome occupancy levels
Cited by: 72
Author(s): Răzvan V. Chereji, Terri D. Bryson, Steven Henikoff
Software Mentions: 2
Published: about 5 years ago

10.1186/s13059-021-02268-4

Minimal genome-wide human CRISPR-Cas9 library
Cited by: 33
Author(s): Emanuel Gonçalvès, Mark Thomas, Fiona M. Behan, Gabriele Picco, Clare Pacini, Felicity Allen, Alessandro Vinceti, Mamta Sharma, David A. Jackson, Stacey Price, Charlotte Beaver, Oliver M. Dovey, David J. Parry‐Smith, Francesco Iorio, Leopold Parts, Kosuke Yusa, Mathew J. Garnett
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-021-02459-z

Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution
Cited by: 8
Author(s): Ilias Georgakopoulos-Soares, Ofer Yizhar-Barnea, Ioannis Mouratidis, Martin Hemberg, Nadav Ahituv
Software Mentions: 2
Published: about 3 years ago

10.1093/ibd/izaa188

Inflammatory Bowel Disease–Associated Changes in the Gut: Focus on Kazan Patients
Cited by: 22
Author(s): Giuseppe Lo Sasso, Lusine Khachatryan, Athanasios Kondylis, James N. D. Battey, Nicolas Sierro, Natalia Danilova, Tatiana V. Grigoryeva, Maria Markelova, Dilyara Khusnutdinova, Alexander Laikov, И. И. Салафутдинов, Yulia D Romanova, Mariia N Siniagina, Ilya Yu. Vasiliev, Eugenia A. Boulygina, Valeriya V. Solovyeva, Ekaterina Garanina, Kristina V. Kitaeva, Konstantin Ivanov, Darja S Chulpanova, Konstantin Kletenkov, Alina Valeeva, А. Х. Одинцова, M. D. Ardatskaya, Р. А. Абдулхаков, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng, С. Р. Абдулхаков
Software Mentions: 2
Published: over 4 years ago

10.1001/jamanetworkopen.2018.4178

Prevalence and Nature of Financial Considerations Documented in Narrative Clinical Records in Intensive Care Units
Cited by: 6
Author(s): Deborah D. Gordon, Ihsaan Patel, Amelia M. Pellegrini, Roy H. Perlis
Software Mentions: 2
Published: about 6 years ago

10.1117/1.JBO.23.5.056008

Context encoding enables machine learning-based quantitative photoacoustics
Cited by: 41
Author(s): Thomas Kirchner, Janek Gröhl, Lena Maier-Hein
Software Mentions: 2
Published: over 6 years ago

10.3390/jcm8101723

Monitoring and Determining Mitochondrial Network Parameters in Live Lung Cancer Cells
Cited by: 6
Author(s): Tamara Mirzapoiazova, Haiqing Li, Anusha Nathan, Saumya Srivstava, Mohd W. Nasser, Frances E. Lennon, Brian Armstrong, Isa Mambetsariev, Peiguo Chu, Srisairam Achuthan, Surinder K. Batra, Prakash Kulkarni, Ravi Salgia
Software Mentions: 2
Published: about 5 years ago

10.1089/cmb.2016.0147

Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast
Cited by: 21
Author(s): Hao Wang, C. Joel McManus, Carl Kingsford
Software Mentions: 2
Published: over 7 years ago

10.1002/jcc.26144

<scp>fromage</scp>: A library for the study of molecular crystal excited states at the aggregate scale
Cited by: 20
Author(s): Miguel Rivera, Michael Dommett, Amir Sidat, Warda Rahim, Rachel Crespo‐Otero
Software Mentions: 2
Published: almost 5 years ago

10.1073/pnas.2017032118

Topographic connectivity reveals task-dependent retinotopic processing throughout the human brain
Cited by: 26
Author(s): Tomas Knapen
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.2100466118

Comprehensive pregnancy monitoring with a network of wireless, soft, and flexible sensors in high- and low-resource health settings
Cited by: 32
Author(s): Dennis Ryu, Dong Hyun Kim, Joan T. Price, Jong Yoon Lee, Ha Uk Chung, E. D. Allen, Jessica Walter, Hyoyoung Jeong, Jingyue Cao, Е. В. Куликова, H. Abu-Zayed, Rachel Lee, Knute L. Martell, Michael Zhang, Brianna R. Kampmeier, Marc Hill, Joo Hee Lee, Edward Kim, Yerim Park, Hokyung Jang, Hany Arafa, Claire Liu, Maureen Chisembele, Bellington Vwalika, Ntazana Sindano, Bridget Spelke, Amy S. Paller, Ashish Premkumar, William A. Grobman, Jeffrey S. A. Stringer, John A. Rogers, Shuai Xu
Software Mentions: 2
Published: over 3 years ago

10.1002/prot.25396

Biological and functional relevance of CASP predictions
Cited by: 11
Author(s): Tianyun Liu, Shirbi Ish-Shalom, Wen Torng, Aleix Lafita, Christian Bock, Matthew Mort, David Neil Cooper, Spencer Bliven, Guido Capitani, Sean D. Mooney, Russ B. Altman
Software Mentions: 2
Published: about 7 years ago

10.1098/rsos.160494

Sensitivity of marine protected area network connectivity to atmospheric variability
Cited by: 51
Author(s): Alan Fox, Lea‐Anne Henry, David Corne, J. Murray Roberts
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.172434

Machine learning methods for locating re-entrant drivers from electrograms in a model of atrial fibrillation
Cited by: 21
Author(s): Max Falkenberg, William Cheng, Nicholas S. Peters, Kim Christensen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41597-020-00631-x

PPDIST, global 0.1° daily and 3-hourly precipitation probability distribution climatologies for 1979–2018
Cited by: 12
Author(s): Hylke E. Beck, Seth Westra, Jackson Tan, Florian Pappenberger, George J. Huffman, Tim R. McVicar, Gaby Gründemann, Noemi Vergopolan, Hayley J. Fowler, Elizabeth Lewis, Koen Verbist, Eric F. Wood
Software Mentions: 2
Published: about 4 years ago

10.1038/srep24154

Avian influenza viruses that cause highly virulent infections in humans exhibit distinct replicative properties in contrast to human H1N1 viruses
Cited by: 34
Author(s): Philippe Simon, Marc-Antoine de La Vega, Éric Paradis, Emelissa J Mendoza, Kevin M. Coombs, Darwyn Kobasa, C. Beauchemin
Software Mentions: 2
Published: over 8 years ago

10.1038/srep36628

Application of profile fitting method to neutron time-of-flight protein single crystal diffraction data collected at the iBIX
Cited by: 12
Author(s): Naomine Yano, Taro Yamada, Takamitsu Hosoya, Takashi Ohhara, Ichiro Tanaka, Katsuhiro Kusaka
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep09467

Strong influence of behavioral dynamics on the ability of testing and treating HIV to stop transmission
Cited by: 18
Author(s): Christopher J. Henry, James S. Koopman
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03867-7

Probing spermiogenesis: a digital strategy for mouse acrosome classification
Cited by: 2
Author(s): Alessandro Taloni, Francesc Font-Clos, Luca Guidetti, Simone Milan, Miriam Ascagni, Chiara Vasco, Maria Enrica Pasini, M Gioria, Emilio Ciusani, Stefano Zapperi, Caterina A. M. La Porta
Software Mentions: 2
Published: over 7 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071