pypi: scipy | Projects | Ecosyste.ms: Papers

10.3389/fnins.2015.00418

Effects of thresholding on correlation-based image similarity metrics
Cited by: 3
Author(s): Vanessa Sochat, Krzysztof J. Gorgolewski, Oluwasanmi Koyejo, Joke Durnez, Russell A. Poldrack
Software Mentions: 3
Published: about 9 years ago

10.1107/S2052252518012149

Photocage-initiated time-resolved solution X-ray scattering investigation of protein dimerization
Cited by: 25
Author(s): Inokentijs Josts, Stephan Niebling, Yunyun Gao, Matteo Levantino, Henning Tidow, Diana C. F. Monteiro
Software Mentions: 3
Published: about 6 years ago

10.1016/j.celrep.2019.09.060

Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes
Cited by: 47
Author(s): Anna L. Mallam, Wisath Sae-Lee, Jeffrey M. Schaub, Fan Tu, Anna M. Battenhouse, Yu Jin Jang, Jonghwan Kim, John B. Wallingford, Ilya J. Finkelstein, Edward M. Marcotte, Kevin Drew
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13061294

An AI-Powered Blood Test to Detect Cancer Using NanoDSF
Cited by: 7
Author(s): Philipp O. Tsvetkov, Rémi Eyraud, Stéphane Ayache, Anton Bougaev, Soazig Malesinski, Hamed Benazha, Svetlana Gorokhova, Christophe Buffat, Caroline Dehais, Marc Sanson, Franck Bielle, Dominique Figarella Branger, Olivier Chinot, Émeline Tabouret, François Devred
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0129016

De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes
Cited by: 22
Author(s): Yevgen Zolotarov, Martina V. Strömvik
Software Mentions: 3
Published: over 9 years ago

10.1007/s11548-021-02332-1

Agreement between rhinomanometry and computed tomography-based computational fluid dynamics
Cited by: 11
Author(s): Manuel Berger, Aris Ι. Giotakis, Martin Pillei, Andreas Mehrle, Michael Kraxner, Florian Kral, Wolfgang Recheis, Herbert Riechelmann, Wolfgang Freysinger
Software Mentions: 3
Published: over 3 years ago

10.2196/10728

Listening to the HysterSisters: A Retrospective Keyword Frequency Analysis of Conversations About Hysterectomy Recovery
Cited by: 2
Author(s): Arpit Dave, Johnny Yi, Andy Boothe, Helene Brashear, Jeffrey Byrne, Yash Gad
Software Mentions: 3
Published: about 5 years ago

10.3390/cells9081795

Evidence Supporting an Antimicrobial Origin of Targeting Peptides to Endosymbiotic Organelles
Cited by: 18
Author(s): Clotilde Garrido, Oliver D. Caspari, Yves Choquet, Francis‐André Wollman, Ingrid Lafontaine
Software Mentions: 3
Published: over 4 years ago

10.1093/cercor/bhab075

Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew
Cited by: 21
Author(s): Xiangzhen Kong, Merel C. Postema, Dick Schijven, Amaia Carrión Castillo, Antonietta Pepe, Fabrice Crivello, Marc Joliot, Bernard Mazoyer, Simon E. Fisher, Clyde Francks
Software Mentions: 3
Published: over 3 years ago

10.3389/fnut.2020.603090

Olfactory Cues in Infant Feeds: Volatile Profiles of Different Milks Fed to Preterm Infants
Cited by: 6
Author(s): Mariana Muelbert, Frank H. Bloomfield, Shikha Pundir, Jane E Harding, Chris Pook
Software Mentions: 3
Published: almost 4 years ago

10.3390/s19143231

Optimal Offloading Decision Strategies and Their Influence Analysis of Mobile Edge Computing
Cited by: 9
Author(s): Jiuyun Xu, Zhuangyuan Hao, Xiaoting Sun
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5360-z

Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes
Cited by: 37
Author(s): Boas Pucker, Samuel F. Brockington
Software Mentions: 3
Published: almost 6 years ago

10.1186/s41235-020-00254-1

Reference frames in spatial communication for navigation and sports: an empirical study in ultimate frisbee players
Cited by: 1
Author(s): Steven M. Weisberg, Anjan Chatterjee
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0096814

Advancing Bag-of-Visual-Words Representations for Lesion Classification in Retinal Images
Cited by: 69
Author(s): Ramon Pires, Herbert F. Jelinek, Jacques Wainer, Eduardo Valle, Anderson Rocha
Software Mentions: 3
Published: over 10 years ago

10.1186/s13321-020-00429-4

AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization
Cited by: 57
Author(s): Jacob O. Spiegel, Jacob D. Durrant
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0228728

Metrics for graph comparison: A practitioner’s guide
Cited by: 75
Author(s): Peter R. Wills, François G. Meyer
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0227886

Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses
Cited by: 57
Author(s): Youn Wook Chung, Ho Jin Gwak, Sungmin Moon, Mina Rho, Ji Hwan Ryu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s42003-020-01247-y

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
Cited by: 215
Author(s): Alma Andersson, Joseph Bergenstråhle, Michaela Asp, Ludvig Bergenstråhle, Aleksandra Jurek, José Fernández Navarro, Joakim Lundeberg
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-021-03971-6

Data-driven biological network alignment that uses topological, sequence, and functional information
Cited by: 2
Author(s): Shawn Gu, Tijana Milenković
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.24859

MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma
Cited by: 25
Author(s): Saurabh Agarwal, Giorgio Milazzo, Kimal Rajapakshe, R Bernardi, Zaowen Chen, Eveline Barberi, Jan Koster, Giovanni Perini, Cristian Coarfa, Jason M. Shohet
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-6482-7

Dynamic accumulation of fatty acids in duck (Anas platyrhynchos) breast muscle and its correlations with gene expression
Cited by: 15
Author(s): Wenlei Fan, Wenjing Liu, Hehe Liu, Qingshi Meng, Yaxi Xu, Yuming Guo, Baowei Wang, Zhengkui Zhou, Shuisheng Hou
Software Mentions: 3
Published: almost 5 years ago

10.1107/S2052252518012058

Unwarping GISAXS data
Cited by: 12
Author(s): Jiliang Liu, Kevin G. Yager
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229526

Micro-structure diffusion scalar measures from reduced MRI acquisitions
Cited by: 13
Author(s): Santiago Aja‐Fernández, Rodrigo de Luis‐García, Maryam Afzali, Malwina Molendowska, Tomasz Pieciak, Antonio Tristán‐Vega
Software Mentions: 3
Published: over 4 years ago

10.1038/s42003-021-01786-y

Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing
Cited by: 12
Author(s): Shimpei I. Kubota, Kei Takahashi, Tomoyuki Mano, Katsuhiko Matsumoto, Takahiro Katsumata, Shoi Shi, Kazuki Tainaka, Hiroki R. Ueda, Shogo Ehata, Kohei Miyazono
Software Mentions: 3
Published: over 3 years ago

10.1186/s13321-016-0125-7

Bioalerts: a python library for the derivation of structural alerts from bioactivity and toxicity data sets
Cited by: 23
Author(s): Isidro Cortés-Ciriano
Software Mentions: 3
Published: over 8 years ago

10.3390/jpm11030188

Telomere Length Dynamics and Chromosomal Instability for Predicting Individual Radiosensitivity and Risk via Machine Learning
Cited by: 8
Author(s): Jared J. Luxton, Miles J. McKenna, Aidan Lewis, Lynn E. Taylor, Sameer Jhavar, Gregory P. Swanson, Susan M. Bailey
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph18157974

“Better If They Laugh with Me than at Me”: The Role of Humor in Coping with Obesity-Related Stigma in Women
Cited by: 5
Author(s): Natalia Mazurkiewicz, Mariusz Lipowski, Jarosław Krefta, Małgorzata Lipowska
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00757

Integration of Digital Pathologic and Transcriptomic Analyses Connects Tumor-Infiltrating Lymphocyte Spatial Density With Clinical Response to BRAF Inhibitors
Cited by: 9
Author(s): Artūras Žiemys, Michelle Kim, Alexander M. Menzies, James S. Wilmott, Georgina V. Long, Richard A. Scolyer, Larry Kwong, Ashley M. Holder, Genevieve M. Boland
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.684396

Adrenomedullin Expression Characterizes Leukemia Stem Cells and Associates With an Inflammatory Signature in Acute Myeloid Leukemia
Cited by: 6
Author(s): Giorgia Simonetti, Davide Angeli, Elisabetta Petracci, Eugenio Fonzi, Susanna Vedovato, Alessandra Sperotto, Antonella Padella, Martina Ghetti, Anna Ferrari, Valentina Robustelli, Rosa Di Liddo, Maria Teresa Conconi, Cristina Papayannidis, Claudio Cerchione, Michela Rondoni, Annalisa Astolfi, Emanuela Ottaviani, Giovanni Martinelli, Michele Gottardi
Software Mentions: 3
Published: over 3 years ago

10.1186/s12866-021-02184-4

Reproducible and accessible analysis of transposon insertion sequencing in Galaxy for qualitative essentiality analyses
Cited by: 2
Author(s): Delphine Larivière, Laura M. Wickham, Kenneth C. Keiler, Anton Nekrutenko
Software Mentions: 3
Published: over 3 years ago

10.1002/jmv.27033

SARS‐CoV‐2 rapid antigen test: Fast‐safe or dangerous? An analysis in the emergency department of an university hospital
Cited by: 20
Author(s): Carola Holzner, Dirk Pabst, Olympia E. Anastasiou, Ulf Dittmer, Randi Manegold, Joachim Riße, David Fistera, Clemens Kill, Maximilian Falk
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0113496

Synergy: A Web Resource for Exploring Gene Regulation in Synechocystis sp. PCC6803
Cited by: 4
Author(s): Niklas Mähler, Otilia Cheregi, Christiane Funk, Sergiu Netotea, Torgeir R. Hvidsten
Software Mentions: 3
Published: almost 10 years ago

10.1186/s13059-016-1090-1

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Cited by: 119
Author(s): Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva‐Cañas, Anna Vlasova, Marina Marcet‐Houben, Begoña Martínez‐Cruz, Jade Yu Cheng, Pablo Prieto, Vı́ctor Quesada, Javier Quilez, Gang Li, Francisca García, Miriam Rubio-Camarillo, Leonor Frías, Paolo Ribeca, Salvador Capella-Gutiérrez, José Manuel Vázquez Rodríguez, Francisco Câmara, Ernesto Lowy, Luca Cozzuto, Ionas Erb, Michael L. Tress, José Manuel Rodriguez, Jorge Ruiz-Orera, Ferrán Reverter, Mireia Casas-Marcé, Laura García-España Soriano, Javier R. Arango, Sophia Derdak, Beatriz Galán, Julie Blanc, Marta Gut, Belén Lorente-Galdós, Marta Andrés-Nieto, Carlos López‐Otín, Alfonso Valencia, Ivo Gut, José Luis Garcı́a, Roderic Guigó, William J. Murphy, Aurora Ruiz‐Herrera, Tomàs Marquès-Bonet, Guglielmo Roma, Cédric Notredame, Thomas Mailund, Mar Albà, Toni Gabaldón, Tyler Alioto, José A. Godoy
Software Mentions: 3
Published: almost 8 years ago

10.3389/fvets.2021.714423

Magnetic Resonance Imaging Findings of the Proximal Metacarpal Region in Warmblood Horses: 36 Lame and 26 Control Limbs (2015–2021)
Cited by: 2
Author(s): Elisabeth van Veggel, Kurt Selberg, Brenda van der Velde-Hoogelander, Nick Bolas, Katrien Vanderperren, Hendrik Bergman
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0218085

De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages
Cited by: 23
Author(s): C. Rozenfeld, José Blanca, Víctor Gallego, Victor García‐Carpintero, J.G. Herranz-Jusdado, Luz Pérez, Juan F. Asturiano, Joaquı́n Cañizares, David S. Peñaranda
Software Mentions: 3
Published: over 5 years ago

10.1038/s41396-018-0282-y

A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.)
Cited by: 132
Author(s): Christian Rinke, Francesco Rubino, Lauren F. Messer, Noha H. Youssef, Donovan H. Parks, Maria Chuvochina, Mark V. Brown, Thomas C. Jeffries, Gene W. Tyson, Justin R. Seymour, Philip Hugenholtz
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0182016

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins
Cited by: 20
Author(s): Marcin Michalik, Marcella Orwick‐Rydmark, Michael Habeck, Vikram Alva, Thomas C. Arnold, Dirk Linke
Software Mentions: 3
Published: over 7 years ago

10.1007/s00894-015-2883-y

Improving the iterative Linear Interaction Energy approach using automated recognition of configurational transitions
Cited by: 12
Author(s): C. Ruben Vosmeer, Derk P. Kooi, Luigi Capoferri, Margreet M. Terpstra, Nico Vermeulen, Daan P. Geerke
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.bpj.2018.01.033

CONAN: A Tool to Decode Dynamical Information from Molecular Interaction Maps
Cited by: 70
Author(s): Davide Mercadante, Frauke Gräter, Csaba Daday
Software Mentions: 3
Published: over 6 years ago

10.1016/j.cub.2020.04.042

Two Distinct Types of Eye-Head Coupling in Freely Moving Mice
Cited by: 93
Author(s): Arne F. Meyer, John O’Keefe, Jasper Poort
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2202-16-S1-P184

pypet: a python toolkit for simulations and numerical experiments
Cited by: 0
Author(s): Robert K. Meyer, Klaus Obermayer
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0240693

Inside the decentralised casino: A longitudinal study of actual cryptocurrency gambling transactions
Cited by: 6
Author(s): Oliver James Scholten, David Zendle, James Alfred Walker
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0216080

Using fecal microbiota as biomarkers for predictions of performance in the selective breeding process of pedigree broiler breeders
Cited by: 26
Author(s): Sandra Díaz-Sánchez, Alessandra Perrotta, Isaac Rockafellow, Eric J. Alm, Ron Okimoto, Rachel Hawken, Irene Hanning
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053273320001916

SPIND-TC: an indexing method for two-color X-ray diffraction data
Cited by: 2
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 2
Published: over 4 years ago

10.1107/S2059798321001170

Ice in biomolecular cryocrystallography
Cited by: 8
Author(s): David Moreau, Hakan Atakişi, Robert Thorne
Software Mentions: 2
Published: over 3 years ago

10.1186/s40478-020-00927-4

Validation of machine learning models to detect amyloid pathologies across institutions
Cited by: 20
Author(s): Juan C. Vizcarra, Marla Gearing, Michael J. Keiser, Jonathan D. Glass, Brittany N. Dugger, David Gutman
Software Mentions: 2
Published: over 4 years ago

10.1186/s13756-021-00956-1

Long-term antimicrobial effectiveness of a silver-impregnated foil on high-touch hospital surfaces in patient rooms
Cited by: 1
Author(s): Andreas F. Widmer, Sonja Kuster, Marc Dangel, Sammy Jäger, Reno Frei
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-14-268

Centroid based clustering of high throughput sequencing reads based on n-mer counts
Cited by: 17
Author(s): Alexander Solovyov, W. Ian Lipkin
Software Mentions: 2
Published: about 11 years ago

10.1186/s12859-019-3303-6

Base-pair ambiguity and the kinetics of RNA folding
Cited by: 2
Author(s): Guangyao Zhou, Jackson Loper, Stuart Geman
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-020-3437-6

Identification of early mild cognitive impairment using multi-modal data and graph convolutional networks
Cited by: 17
Author(s): Jin Liu, Guanxin Tan, Wei Lan, Jianxin Wang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-016-1015-8

BAGEL: a computational framework for identifying essential genes from pooled library screens
Cited by: 205
Author(s): Traver Hart, Jason Moffat
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-15-S9-S7

Fast lossless compression via cascading Bloom filters
Cited by: 23
Author(s): Roye Rozov, Ron Shamir, Eran Halperin
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2148-13-54

Probabilistic models for CRISPR spacer content evolution
Cited by: 13
Author(s): Anne Kupczok, Jonathan P. Bollback
Software Mentions: 2
Published: over 11 years ago

10.1186/s12864-018-5024-z

From mutations to mechanisms and dysfunction via computation and mining of protein energy landscapes
Cited by: 6
Author(s): Wanli Qiao, Nasrin Akhter, Xiaowen Fang, T. Maximova, Erion Plaku, Amarda Shehu
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-015-1264-3

Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study
Cited by: 15
Author(s): John A. Capra
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-021-07965-9

A tetraploidization event shaped the Aquilaria sinensis genome and contributed to the ability of sesquiterpenes synthesis
Cited by: 3
Author(s): Fanbo Meng, Tianzhe Chu, Qiang Tang, Wei Chen
Software Mentions: 2
Published: about 3 years ago

10.1186/s12864-018-5055-5

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought
Cited by: 34
Author(s): Jennifer Spindel, Jeff Dahlberg, Matthew S. Colgan, Joy Hollingsworth, Julie Sievert, Scott H. Staggenborg, Robert B. Hutmacher, Christer Jansson, John P. Vogel
Software Mentions: 2
Published: about 6 years ago

10.1186/s12880-021-00558-8

Fast calculation software for modified Look-Locker inversion recovery (MOLLI) T1 mapping
Cited by: 3
Author(s): Yoon‐Chul Kim, Khu Rai Kim, Hyelee Lee, Yeon Hyeon Choe
Software Mentions: 2
Published: almost 4 years ago

10.1186/1752-0509-8-74

Prediction of kinase inhibitor response using activity profiling, in vitro screening, and elastic net regression
Cited by: 17
Author(s): Trish P Tran, Edison Ong, Andrew Hodges, Giovanni Paternostro, Carlo Piermarocchi
Software Mentions: 2
Published: over 10 years ago

10.1016/j.bbamem.2016.02.007

Computational virology: From the inside out
Cited by: 44
Author(s): Tyler Reddy, Mark S. P. Sansom
Software Mentions: 2
Published: over 8 years ago

10.1093/bioinformatics/btz265

PHANOTATE: a novel approach to gene identification in phage genomes
Cited by: 130
Author(s): Katelyn McNair, Carol L. Ecale Zhou, Elizabeth A. Dinsdale, Brian Souza, Robert A. Edwards
Software Mentions: 2
Published: over 5 years ago

10.1242/bio.036103

Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance
Cited by: 16
Author(s): David Mavor, Kyle Barlow, Daniel Asarnow, Yuliya Birman, Derek Britain, Weilin Chen, Evan M. Green, L.R. Kenner, Bruk Mensa, Leanna S. Morinishi, Charlotte Nelson, Erin M. Poss, Pooja Suresh, Ruilin Tian, Taylor Arhar, Beatrice Ary, Diana Bauer, Ian D. Bergman, Rachel M. Brunetti, Cynthia M. Chio, Shizhong Dai, Miles Sasha Dickinson, Susanna K. Elledge, Cole V. M. Helsell, Nathan L. Hendel, Emily L. Kang, Nadja Kern, Matvei Khoroshkin, Lisa L. Kirkemo, Greyson R. Lewis, Kevin Lou, Wesley M. Marin, Alison Maxwell, Peter F. McTigue, Douglas Myers-Turnbull, Tamas L. Nagy, Andrew M. Natale, Keely Oltion, Sergei Pourmal, Gabriel Reder, Nicholas J. Rettko, Peter J. Rohweder, Daniel M. C. Schwarz, Sophia K. Tan, Paul Thomas, Ryan W. Tibble, Jason P. Town, Mary K. Tsai, Fatima S. Ugur, Douglas R. Wassarman, Alexander M. Wolff, Taia Wu, Derek Bogdanoff, Jennifer Li, Kurt S. Thorn, Shane Ó’Conchúir, Danielle L. Swaney, Eric D. Chow, Hiten Madhani, Sy Redding, Daniel N. Bolon, Tanja Kortemme, Joseph L. DeRisi, Martin Kampmann, James S. Fraser
Software Mentions: 2
Published: over 6 years ago

10.3390/biomedicines9091229

Cisd2 Preserves the Youthful Pattern of the Liver Proteome during Natural Aging of Mice
Cited by: 4
Author(s): Chen Huang, Yi Huang, Zhao Qing Shen, Lin Chao, Ting Fen Tsai
Software Mentions: 2
Published: about 3 years ago

10.3390/biom10060946

Sequence-Dependent Correlated Segments in the Intrinsically Disordered Region of ChiZ
Cited by: 17
Author(s): Alan Hicks, Cristian A. Escobar, Timothy A. Cross, Huan‐Xiang Zhou
Software Mentions: 2
Published: over 4 years ago

10.3390/biom10101460

Predicting Deep Learning Based Multi-Omics Parallel Integration Survival Subtypes in Lung Cancer Using Reverse Phase Protein Array Data
Cited by: 33
Author(s): Satoshi Takahashi, Ken Asada, Ken Takasawa, Ryo Shimoyama, Akira Sakai, Amina Bolatkan, Norio Shinkai, Kazuma Kobayashi, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Software Mentions: 2
Published: about 4 years ago

10.1186/s13068-019-1436-5

Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)
Cited by: 42
Author(s): Kristian Barrett, Lene Lange
Software Mentions: 2
Published: over 5 years ago

10.1016/j.bonr.2020.100261

Comparison of different microCT-based morphology assessment tools using human trabecular bone
Cited by: 12
Author(s): Lukas Steiner, Alexander Synek, Dieter H. Pahr
Software Mentions: 2
Published: over 4 years ago

10.3390/brainsci10120991

Predictive Values of Location and Volumetric MRI Injury Patterns for Neurodevelopmental Outcomes in Hypoxic-Ischemic Encephalopathy Neonates
Cited by: 12
Author(s): Peter D. Chang, Daniel Chow, Anna Alber, Yen Kuang Lin, Young Ah Youn
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00429-020-02124-4

Properties and temporal dynamics of choice- and action-predictive signals during item recognition decisions
Cited by: 4
Author(s): Roberto Guidotti, Annalisa Tosoni, Carlo Sestieri
Software Mentions: 2
Published: over 4 years ago

10.1021/acs.langmuir.1c01689

Investigation of Self-Emulsifying Drug-Delivery System Interaction with a Biomimetic Membrane under Conditions Relevant to the Small Intestine
Cited by: 6
Author(s): Oliver J. Hedge, Fredrik Höök, Paul Joyce, Christel A S Bergström
Software Mentions: 2
Published: over 3 years ago

10.1038/s41375-021-01318-x

Integrated genomic-metabolic classification of acute myeloid leukemia defines a subgroup with NPM1 and cohesin/DNA damage mutations
Cited by: 13
Author(s): Giorgia Simonetti, Carlo Mengucci, Antonella Padella, Eugenio Fonzi, Gianfranco Picone, Claudio Delpino, Jacopo Nanni, Rossella De Tommaso, Eugenia Franchini, Cristina Papayannidis, Giovanni Marconi, Massimiliano Pazzaglia, Margherita Perricone, Emanuela Scarpi, Maria Chiara Fontana, Samantha Bruno, Michela Tebaldi, Anna Ferrari, Maria Teresa Bochicchio, Andrea Ghelli Luserna di Rorà, Martina Ghetti, Roberta Napolitano, Annalisa Astolfi, Carmen Baldazzi, Viviana Guadagnuolo, Emanuela Ottaviani, Ilaria Iacobucci, Michèle Cavo, Gastone Castellani, Torsten Haferlach, Daniel Remondini, Francesco Capozzi, Giovanni Martinelli
Software Mentions: 2
Published: over 3 years ago

10.1002/mrm.28620

Apparent propagator anisotropy from single‐shell diffusion MRI acquisitions
Cited by: 7
Author(s): Santiago Aja‐Fernández, Antonio Tristán‐Vega, Derek K. Jones
Software Mentions: 2
Published: almost 4 years ago

10.3390/ma9080649

The Sulphur Poisoning Behaviour of Gadolinia Doped Ceria Model Systems in Reducing Atmospheres
Cited by: 21
Author(s): Matthias P. Gerstl, Andreas Nenning, Riza Iskandar, Veronika A. Rojek-Wöckner, Martin Bram, Herbert Hutter, Alexander Karl Opitz
Software Mentions: 2
Published: over 8 years ago

10.3390/ma14071747

Design and Additive Manufacturing of Porous Sound Absorbers—A Machine-Learning Approach
Cited by: 15
Author(s): Sebastian Kuschmitz, Tobias P. Ring, Hagen Watschke, Sabine Langer, Thomas Vietor
Software Mentions: 2
Published: over 3 years ago

10.3390/metabo9110264

Seasonal Variations and Interspecific Differences in Metabolomes of Freshwater Fish Tissues: Quantitative Metabolomic Profiles of Lenses and Gills
Cited by: 16
Author(s): Yuri P. Tsentalovich, Vadim V. Yanshole, Lyudmila V. Yanshole, Ekaterina A. Zelentsova, Arsenty D Melnikov, R. Z. Sagdeev
Software Mentions: 2
Published: about 5 years ago

10.1016/j.mex.2020.101052

A method to implement the electrode-entropy differentiation for lithium batteries
Cited by: 0
Author(s): Guillaume Thenaisie, Junho Cho, Cheol-Hui Park, Sang‐Gug Lee
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms8030331

Clustering of Bacterial Growth Dynamics in Response to Growth Media by Dynamic Time Warping
Cited by: 6
Author(s): Yangyang Cao, Tetsuya Yomo, Bei‐Wen Ying
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules24091802

Calibration Transfer Based on Affine Invariance for NIR without Transfer Standards
Cited by: 13
Author(s): Yuhui Zhao, Ziqi Zhao, Peng Shan, Silong Peng, Jinlong Yu, Shuang Gao
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules24071289

PLS Subspace-Based Calibration Transfer for Near-Infrared Spectroscopy Quantitative Analysis
Cited by: 13
Author(s): Yuhui Zhao, Jinlong Yu, Peng Shan, Ziqi Zhao, Xueying Jiang, Shuang Gao
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules25010154

Photochromic and Photocatalytic Properties of Ultra-Small PVP-Stabilized WO3 Nanoparticles
Cited by: 9
Author(s): Д. А. Козлов, A. B. Shcherbakov, T. O. Kozlova, Borislav Angelov, G. P. Kopitsa, А.В. Гаршев, А. Е. Baranchikov, О. С. Иванова, В. К. Иванов
Software Mentions: 2
Published: almost 5 years ago

10.3390/molecules24040740

Fentanyl Family at the Mu-Opioid Receptor: Uniform Assessment of Binding and Computational Analysis
Cited by: 38
Author(s): Piotr F. J. Lipiński, Piotr Kossoń, Joanna Matalińska, Piotr Roszkowski, Zbigniew Czarnocki, Małgorzata Jarończyk, Aleksandra Misicka, Jan Cz. Dobrowolski, Joanna Sadlej
Software Mentions: 2
Published: almost 6 years ago

10.15252/msb.20209813

Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis
Cited by: 19
Author(s): Özge Karayel, Xu Peng, Isabell Bludau, Senthil Velan Bhoopalan, Yu Yao, Freitas Colaco Ana Rita, Alberto Santos, Brenda A. Schulman, Arno F. Alpi, Mitchell J. Weiss, Matthias Mann
Software Mentions: 2
Published: almost 4 years ago

10.3390/v13050893

Scalable, Micro-Neutralization Assay for Assessment of SARS-CoV-2 (COVID-19) Virus-Neutralizing Antibodies in Human Clinical Samples
Cited by: 21
Author(s): Richard S. Bennett, Elena Postnikova, Janie Liang, Robin Gross, Steven Mazur, Saurabh Dixit, Gregory Kocher, Shuīqìng Yú, Shalamar Georgia-Clark, Dawn M. Gerhardt, Yíngyún Caì, Lindsay Marron, В. В. Лукин, Michael R. Holbrook
Software Mentions: 2
Published: over 3 years ago

10.12688/wellcomeopenres.15421.1

Proteome turnover in the bloodstream and procyclic forms of Trypanosoma brucei measured by quantitative proteomics
Cited by: 26
Author(s): Michele Tinti, Maria Lucia S. Güther, Thomas W. M. Crozier, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 2
Published: about 5 years ago

10.1098/rstb.2019.0681

Experimental manipulation of selfish genetic elements links genes to microbial community function
Cited by: 14
Author(s): Steven D. Quistad, Guilhem Doulcier, Paul B. Rainey
Software Mentions: 2
Published: over 4 years ago

10.1111/tpj.13743

Multiple marker abundance profiling: combining selected reaction monitoring and data‐dependent acquisition for rapid estimation of organelle abundance in subcellular samples
Cited by: 13
Author(s): Cornelia M. Hooper, Tim J. Stevens, Anna Maija Saukkonen, Ian Castleden, Pragya Singh, Gregory W. Mann, Bertrand Fabre, Jun Ito, Michael J. Deery, Kathryn S. Lilley, Young-Mo Kim, A. Harvey Millar, Joshua L. Heazlewood, Harriet T. Parsons
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.3000712

PiVR: An affordable and versatile closed-loop platform to study unrestrained sensorimotor behavior
Cited by: 23
Author(s): David Tadres, Matthieu Louis
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pbio.2000633

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine
Cited by: 103
Author(s): Nicole M. Vega, Jeff Gore
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1005329

Inferring the Chemotactic Strategy of P. putida and E. coli Using Modified Kramers-Moyal Coefficients
Cited by: 20
Author(s): Oliver Pohl, Marius Hintsche, Zahra Alirezaeizanjani, Maximilian Seyrich, Carsten Beta, Holger Stark
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1006359

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas
Cited by: 82
Author(s): Maximilian Schmidt, Rembrandt Bakker, Kelly Shen, Gleb Bezgin, Markus Diesmann, Sacha J. van Albada
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1006325

A model for hydrophobic protrusions on peripheral membrane proteins
Cited by: 22
Author(s): Edvin Fuglebakk, Nathalie Reuter
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1008231

Dynamic bistable switches enhance robustness and accuracy of cell cycle transitions
Cited by: 15
Author(s): Jan Rombouts, Lendert Gelens
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008122

Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention
Cited by: 6
Author(s): Yunjun Zhang, Thomas Leitner, Jan Albert, Tom Britton
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1008680

Dynamics of chromosomal target search by a membrane-integrated one-component receptor
Cited by: 6
Author(s): Linda Martini, Sophie Brameyer, Elisabeth Hoyer, Kirsten Jung, Ulrich Gerland
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1004762

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome
Cited by: 136
Author(s): Matthieu Gilson, Rubén Moreno-Bote, Adrián Ponce‐Alvarez, Petra Ritter, Gustavo Deco
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1006692

A diurnal flux balance model of Synechocystis sp. PCC 6803 metabolism
Cited by: 23
Author(s): Debolina Sarkar, Thomas Mueller, Deng Liu, Himadri B. Pakrasi, Costas D. Maranas
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1005082

Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
Cited by: 21
Author(s): Mark Read, Jacqueline Bailey, Jon Timmis, Tatyana Chtanova
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pcbi.1009299

Quantifying dose-, strain-, and tissue-specific kinetics of parainfluenza virus infection
Cited by: 4
Author(s): Lubna Pinky, Crystal W. Burke, Charles J. Russell, Amber M. Smith
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007417

Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis
Cited by: 19
Author(s): Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle C. A. Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1007218

Optimizing circadian drug infusion schedules towards personalized cancer chronotherapy
Cited by: 25
Author(s): Roger J. Hill, Pasquale F. Innominato, Françis Lévi, Annabelle Ballesta
Software Mentions: 2
Published: almost 5 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071