pypi: scipy | Projects | Ecosyste.ms: Papers

10.7554/eLife.49748

Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with UTIs
Cited by: 41
Author(s): Anna Sintsova, Arwen E Frick-Cheng, Sara N. Smith, Ali Pirani, Sargurunathan Subashchandrabose, Evan S. Snitkin, Harry L. T. Mobley
Software Mentions: 4
Published: about 5 years ago

10.1038/s41437-018-0177-8

MHC class I diversity predicts non-random mating in Chinese alligators (Alligator sinensis)
Cited by: 8
Author(s): Quan Han, Ru-Na Sun, Hai-Qiong Yang, Zhenwei Wang, Qiu‐Hong Wan, Sheng‐Guo Fang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fncir.2014.00005

A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system
Cited by: 22
Author(s): Bernhard Kaplan, Anders Lansner
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12911-019-0805-0

Identifying clinically important COPD sub-types using data-driven approaches in primary care population based electronic health records
Cited by: 54
Author(s): Maria Pikoula, Jennifer K Quint, Francis Nissen, Harry Hemingway, Liam Smeeth, Spiros Denaxas
Software Mentions: 4
Published: over 5 years ago

10.1002/hbm.25144

High‐density intracranial recordings reveal a distinct site in anterior dorsal precentral cortex that tracks perceived speech
Cited by: 10
Author(s): Julia Berezutskaya, Clarissa Baratin, Zachary V. Freudenburg, N.F. Ramsey
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.31209

Mouse color and wavelength-specific luminance contrast sensitivity are non-uniform across visual space
Cited by: 59
Author(s): Daniel J. Denman, Jennifer Luviano, Douglas R. Ollerenshaw, Sissy Cross, Derric Williams, Michael A. Buice, Shawn R. Olsen, R. Clay Reid
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0212189

Preprocessing 2D data for fast convex hull computations
Cited by: 2
Author(s): Oswaldo Cadenas, Graham M. Megson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0121233

Disease Specific Productivity of American Cancer Hospitals
Cited by: 0
Author(s): Jeffrey A. Goldstein, Vinay Prasad
Software Mentions: 4
Published: over 9 years ago

10.3389/fmed.2020.00177

Effects of Label Noise on Deep Learning-Based Skin Cancer Classification
Cited by: 31
Author(s): Achim Hekler, Jakob Nikolas Kather, Eva Krieghoff-Henning, Jochen Utikal, Friedegund Meier, Frank Friedrich Gellrich, Julius Upmeier zu Belzen, Lars E. French, Justin Gabriel Schlager, Kamran Ghoreschi, Tabea Wilhelm, Heinz Kutzner, Carola Berking, Markus V. Heppt, Sebastian Haferkamp, Wiebke Sondermann, Dirk Schadendorf, Bastian Schilling, Benjamin Izar, Roman C. Maron, Max Schmitt, Stefan Fröhling, Daniel B. Lipka, Titus J. Brinker
Software Mentions: 4
Published: over 4 years ago

10.1109/tbdata.2020.3035935

COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature
Cited by: 47
Author(s): Yifan Peng, Yuxing Tang, Sungwon Lee, Yingying Zhu, Ronald M. Summers, Zhiyong Lu
Software Mentions: 4
Published: over 3 years ago

10.1074/mcp.O117.067728

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
Cited by: 62
Author(s): Bo Zhang, Mohammad Pirmoradian, Roman A. Zubarev, Lukas Käll
Software Mentions: 4
Published: over 7 years ago

10.1111/acel.13443

The antagonistic pleiotropy of insulin‐like growth factor 1
Cited by: 22
Author(s): William B. Zhang, Kenny Ye, Nir Barzilai, Sofiya Milman
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.65856

CRISPR-based functional genomics in human dendritic cells
Cited by: 10
Author(s): Marco Jost, Amy N. Jacobson, Jeffrey A. Hussmann, Giana Cirolia, Michael A. Fischbach, Jonathan S. Weissman
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0050039

Word Decoding of Protein Amino Acid Sequences with Availability Analysis: A Linguistic Approach
Cited by: 20
Author(s): Kenta Motomura, Tomohiro Fujita, Motosuke Tsutsumi, Satsuki Kikuzato, Morikazu Nakamura, Joji M. Otaki
Software Mentions: 4
Published: about 12 years ago

10.7554/eLife.62438

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping
Cited by: 52
Author(s): Philip P. Adams, Gabriele Baniulyte, Caroline Esnault, Kavya Chegireddy, Navjot Singh, Molly Monge, Ryan Dale, Gisela Storz, Joseph T. Wade
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0119807

Protocols and Programs for High-Throughput Growth and Aging Phenotyping in Yeast
Cited by: 48
Author(s): Paul P. Jung, Nils Christian, Daniel P. Kay, Alexander Skupin, Carole L. Linster
Software Mentions: 4
Published: over 9 years ago

10.1186/s12920-020-0659-4

Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer
Cited by: 16
Author(s): Chai-Jin Lee, Hongryul Ahn, Dabin Jeong, Minwoo Pak, Ji Hwan Moon, Sun Kim
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0245368

Utilization of the Naranjo scale to evaluate adverse drug reactions at a free-standing children’s hospital
Cited by: 11
Author(s): Madhavi Murali, Sarah L. Suppes, Keith Feldman, Jennifer L. Goldman
Software Mentions: 4
Published: almost 4 years ago

10.1080/19490976.2020.1814107

Young versus aged microbiota transplants to germ-free mice: increased short-chain fatty acids and improved cognitive performance
Cited by: 58
Author(s): Jun-Young Lee, Venugopal Reddy Venna, David J. Durgan, Huanan Shi, Jacob Hudobenko, Nagireddy Putluri, Joseph F. Petrosino, Louise D. McCullough, Robert M. Bryan
Software Mentions: 4
Published: about 4 years ago

10.1080/19490976.2021.1927635

Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Cited by: 8
Author(s): Patrick Browne, Frederik Cold, Andreas Munk Petersen, Sofie Ingdam Halkjær, Alice Højer Christensen, Stig Günther, Lars Hestbjerg Hansen
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-021-04329-8

DI2: prior-free and multi-item discretization of biological data and its applications
Cited by: 2
Author(s): Leonardo Alexandre, Rafael S. Costa, Rui Henriques
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0163556

Separating Predicted and Perceived Sensory Consequences of Motor Learning
Cited by: 23
Author(s): Bernard Marius ’t Hart, Denise Y. P. Henriques
Software Mentions: 4
Published: about 8 years ago

10.1093/gigascience/giaa136

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma
Cited by: 8
Author(s): Lauren Sanders, Allison Cheney, Lucas Seninge, Anouk van den Bout, Marissa Chen, Holly C. Beale, Ellen Kephart, Jacob Pfeil, Katrina Learned, A. Geoffrey Lyle, Isabel Bjork, David Haussler, Sofie R. Salama, Olena M. Vaske
Software Mentions: 4
Published: almost 4 years ago

10.1107/S2052252515006740

Serial snapshot crystallography for materials science with SwissFEL
Cited by: 18
Author(s): Catherine Dejoie, Stef Smeets, Christian Baerlocher, Nobumichi Tamura, Philip Pattison, R. Abela, Lynne B. McCusker
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0224143

Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data
Cited by: 14
Author(s): J. Abecassis, Anne-Sophie Hamy, Cécile Laurent, Benjamin Sadacca, Hélène Bonsang-Kitzis, Fabien Reyal, Jean-Philippe Vert
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph17186711

Objective Facts or Misleading Hype? Associations between Features of E-Cigarette Marketing and Sales on a Chinese E-Commerce Platform
Cited by: 2
Author(s): Yibei Chen, Shaojing Sun, Xiaoquan Zhao, Han Zhou, Fan Wang
Software Mentions: 4
Published: about 4 years ago

10.1128/mSystems.00731-19

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries
Cited by: 113
Author(s): Matthew R. Olm, Alexander Crits-Christoph, Spencer Diamond, Adi Lavy, Paula B. Matheus Carnevali, Jillian F. Banfield
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0130622

DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications
Cited by: 54
Author(s): Yiming Lu, Wubin Qu, Guangyu Shan, Chenggang Zhang
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2020.00194

Quantifying RNA Editing in Deep Transcriptome Datasets
Cited by: 26
Author(s): Claudio Lo Giudice, Domenico Alessandro Silvestris, Shalom Hillel Roth, Eli Eisenberg, Graziano Pesole, Angela Gallo, Ernesto Picardi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0203839

Using wearable sensors to classify subject-specific running biomechanical gait patterns based on changes in environmental weather conditions
Cited by: 40
Author(s): Nizam Uddin Ahamed, Dylan Kobsar, Lauren C. Benson, Christian A. Clermont, Russell Kohrs, Sean T. Osis, Reed Ferber
Software Mentions: 4
Published: about 6 years ago

10.1186/s13059-020-01983-8

High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells
Cited by: 73
Author(s): Peiyao A. Zhao, Takayo Sasaki, David M. Gilbert
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-020-02022-2

RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function
Cited by: 28
Author(s): Boyang Shi, Jinsong Zhang, Jian Heng, Jing Gong, Ting Zhang, Li Pan, Bao‐Fa Sun, Ying Yang, Ning Zhang, Yongliang Zhao, Hailin Wang, Feng Liu, Qiangfeng Cliff Zhang, Yun‐Gui Yang
Software Mentions: 4
Published: over 4 years ago

10.3390/sports9050068

An Analysis of Sport-Specific Pain Symptoms through Inter-Individual Training Differences in CrossFit
Cited by: 3
Author(s): Maria Alexandra Bernstorff, Norman Schumann, Nader Maai, Thomas A. Schildhauer, Matthias Königshausen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1006401

Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes
Cited by: 52
Author(s): H. Charlotte van der Does, Like Fokkens, Ally Yang, Sarah M. Schmidt, Léon Langereis, Joanna Lukasiewicz, Timothy R. Hughes, Martijn Rep
Software Mentions: 4
Published: about 8 years ago

10.1186/s13059-018-1392-6

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
Cited by: 99
Author(s): Paul Bailey, Christian Schudoma, William J. Jackson, Erin Baggs, Gulay Dagdas, Wilfried Haerty, Matthew J. Moscou, Ksenia V. Krasileva
Software Mentions: 4
Published: almost 7 years ago

10.3389/fncom.2013.00112

Anisotropic connectivity implements motion-based prediction in a spiking neural network
Cited by: 10
Author(s): Bernhard Kaplan, Anders Lansner, Guillaume S. Masson, Laurent Perrinet
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pcbi.1008914

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Cited by: 29
Author(s): Laetitia Hebert, Tosif Ahamed, Á. S. Costa, Liam O’Shaughnessy, Greg J. Stephens
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1006077

New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images
Cited by: 1
Author(s): Ilya Patrushev, Christina James-Zorn, Aldo Ciau-Uitz, Roger Patient, Michael J. Gilchrist
Software Mentions: 4
Published: about 6 years ago

10.1186/s13059-015-0721-2

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
Cited by: 2,420
Author(s): David Emms, Steven Kelly
Software Mentions: 4
Published: over 9 years ago

10.1063/1.5132692

Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein
Cited by: 14
Author(s): David C. Wych, James S. Fraser, David L. Mobley, Michael E. Wall
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-019-2596-9

Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks
Cited by: 8
Author(s): André Voigt, Eivind Almaas
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes11070775

Evolutionary History of the Risk of SNPs for Diffuse-Type Gastric Cancer in the Japanese Population
Cited by: 2
Author(s): Risa L. Iwasaki, Koji Ishiya, Hideaki Kanzawa-Kiriyama, Yosuke Kawai, Jun Gojobori, Yoko Satta
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008001

Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites
Cited by: 2
Author(s): Ethan D. Evans, Dai Cl, Siavash Isazadeh, Shinkyu Park, Carlo Ratti, Eric J. Alm
Software Mentions: 4
Published: over 4 years ago

10.1038/s42003-020-01419-w

Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs
Cited by: 27
Author(s): M.G. Iadanza, Bob Schiffrin, Paul White, Matthew Watson, Jim E. Horne, A.J. Higgins, Antonio N. Calabrese, David J. Brockwell, Roman Tůma, Antreas C. Kalli, Sheena E. Radford, Neil A. Ranson
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1008476

Hi-C implementation of genome structure for in silico models of radiation-induced DNA damage
Cited by: 7
Author(s): Samuel Ingram, Nicholas Henthorn, John-William Warmenhoven, N.F. Kirkby, Ranald I Mackay, Karen J Kirkby, Michael J Merchant
Software Mentions: 4
Published: almost 4 years ago

10.1021/acsnano.0c10632

Spatial Regulation of T-Cell Signaling by Programmed Death-Ligand 1 on Wireframe DNA Origami Flat Sheets
Cited by: 37
Author(s): Trixy Fang, Jonatan Alvelid, Joel Spratt, Elena Ambrosetti, Ilaria Testa, Ana I. Teixeira
Software Mentions: 4
Published: almost 4 years ago

10.1002/cam4.1498

Establishment of a nine‐gene prognostic model for predicting overall survival of patients with endometrial carcinoma
Cited by: 13
Author(s): Jianchao Ying, Qian Wang, Teng Xu, Jianxin Lyu
Software Mentions: 4
Published: over 6 years ago

10.3390/genes10060433

BarkBase: Epigenomic Annotation of Canine Genomes
Cited by: 26
Author(s): Kate Megquier, Diane P. Genereux, Jessica P. Hekman, Ross Swofford, Jason Turner-Maier, Jeremy Johnson, Jacob Alonso, Li Xue, Kathleen M. Morrill, Lynne J. Anguish, Michele Koltookian, Brittney Logan, Claire R. Sharp, Lluís Ferrer, Kerstin Lindblad‐Toh, Vicki N. Meyers-Wallen, Andrew M. Hoffman, Elinor K. Karlsson
Software Mentions: 4
Published: over 5 years ago

10.1186/s12863-016-0388-z

Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms
Cited by: 40
Author(s): Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud‐Haond, Solenn Stoeckel
Software Mentions: 4
Published: over 8 years ago

10.3389/fpsyt.2020.532623

Identification of Veterans With PTSD Based on EEG Features Collected During Sleep
Cited by: 3
Author(s): Swamy Laxminarayan, Chao Wang, Tatsuya Oyama, J David Cashmere, Anne Germain, Jaques Reifman
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1006844

A new clustering and nomenclature for beta turns derived from high-resolution protein structures
Cited by: 50
Author(s): Maxim V. Shapovalov, Slobodan Vučetić, Roland L. Dunbrack
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83901-x

Continuous glucose monitoring during pregnancy in healthy mice
Cited by: 4
Author(s): Caroline Wuyts, Caroline Simoens, Shirly Pinto, Koenraad Philippaert, Rudi Vennekens
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007909

Perturbation biology links temporal protein changes to drug responses in a melanoma cell line
Cited by: 14
Author(s): Elin Nyman, Richard R. Stein, Xin Jing, Weiqing Wang, Benjamin Marks, Ioannis K. Zervantonakis, Anil Korkut, Nicholas Paul Gauthier, Chris Sander
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1003493

A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses
Cited by: 16
Author(s): F. A. Matsen, Christopher T Small, Khanh Soliven, Gregory Engel, Mohammed Mostafa Feeroz, Xiaoxing Wang, Karen L. Craig, Md. Rakib Hasan, Michael Emerman, Maxine L. Linial, Lisa Jones‐Engel
Software Mentions: 4
Published: over 10 years ago

10.1186/s12862-017-0999-7

Minimal tool set for a prokaryotic circadian clock
Cited by: 42
Author(s): Nicolas Schmelling, Robert Lehmann, Paushali Chaudhury, Christian Beck, Sonja‐Verena Albers, Ilka M. Axmann, Anika Wiegard
Software Mentions: 4
Published: over 7 years ago

10.3389/fpubh.2019.00081

Crowdbreaks: Tracking Health Trends Using Public Social Media Data and Crowdsourcing
Cited by: 41
Author(s): Martin Müller, Marcel Salathé
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83212-1

A novel Python module for statistical analysis of turbulence (P-SAT) in geophysical flows
Cited by: 1
Author(s): Mayank Agarwal, Vishal Deshpande, David Katoshevski, Bimlesh Kumar
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.54082

Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Cited by: 10
Author(s): Tarun Kumar, Leo Blondel, Cassandra G. Extavour
Software Mentions: 4
Published: about 4 years ago

10.1186/s12902-016-0140-8

Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2
Cited by: 8
Author(s): Mogens Fenger, Dorte L. Hansen, Dorte Worm, Lisbeth E. Hvolris, Viggo B. Kristiansen, Elin Rebecka Carlsson, Sten Madsbad
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pcbi.1006434

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria
Cited by: 33
Author(s): Erki Aun, Age Brauer, Veljo Kisand, Tanel Tenson, Maido Remm
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2021.684396

Adrenomedullin Expression Characterizes Leukemia Stem Cells and Associates With an Inflammatory Signature in Acute Myeloid Leukemia
Cited by: 6
Author(s): Giorgia Simonetti, Davide Angeli, Elisabetta Petracci, Eugenio Fonzi, Susanna Vedovato, Alessandra Sperotto, Antonella Padella, Martina Ghetti, Anna Ferrari, Valentina Robustelli, Rosa Di Liddo, Maria Teresa Conconi, Cristina Papayannidis, Claudio Cerchione, Michela Rondoni, Annalisa Astolfi, Emanuela Ottaviani, Giovanni Martinelli, Michele Gottardi
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-72781-2

Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine
Cited by: 29
Author(s): Marisa Maia, António E. N. Ferreira, Rui Nascimento, Filipa Monteiro, Francisco Traquete, A. Marques, Jorge Cunha, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva
Software Mentions: 3
Published: about 4 years ago

10.1186/s12885-020-06906-1

Stereotactic robotic body radiotherapy for patients with oligorecurrent pulmonary metastases
Cited by: 12
Author(s): P. Berkovic, Ákos Gulybán, Gilles Defraene, Laurie Swenen, D. Dechambre, Paul Viet Nguyen, Nicolas Jansen, C. Mievis, Pierre Lovinfosse, L. Jánváry, Maarten Lambrecht, Gert De Meerleer
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-62525-7

Decoding of Pain Perception using EEG Signals for a Real-Time Reflex System in Prostheses: A Case Study
Cited by: 22
Author(s): Zied Tayeb, Rohit Bose, Andrei Dragomir, Luke Osborn, Nitish V. Thakor, Gordon Cheng
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007921

Signal-to-signal neural networks for improved spike estimation from calcium imaging data
Cited by: 8
Author(s): Jilt Sebastian, Mriganka Sur, Hema A. Murthy, Mathew Magimai-Doss
Software Mentions: 3
Published: over 3 years ago

10.3389/fbioe.2020.00249

Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments
Cited by: 20
Author(s): Jessica Yu, Neda Bagheri
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.00757

Integration of Digital Pathologic and Transcriptomic Analyses Connects Tumor-Infiltrating Lymphocyte Spatial Density With Clinical Response to BRAF Inhibitors
Cited by: 9
Author(s): Artūras Žiemys, Michelle Kim, Alexander M. Menzies, James S. Wilmott, Georgina V. Long, Richard A. Scolyer, Larry Kwong, Ashley M. Holder, Genevieve M. Boland
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007822

Biophysically grounded mean-field models of neural populations under electrical stimulation
Cited by: 36
Author(s): Caglar Cakan, Klaus Obermayer
Software Mentions: 3
Published: over 4 years ago

10.3389/fnins.2015.00418

Effects of thresholding on correlation-based image similarity metrics
Cited by: 3
Author(s): Vanessa Sochat, Krzysztof J. Gorgolewski, Oluwasanmi Koyejo, Joke Durnez, Russell A. Poldrack
Software Mentions: 3
Published: about 9 years ago

10.3389/fnut.2020.603090

Olfactory Cues in Infant Feeds: Volatile Profiles of Different Milks Fed to Preterm Infants
Cited by: 6
Author(s): Mariana Muelbert, Frank H. Bloomfield, Shikha Pundir, Jane E Harding, Chris Pook
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-41345-4

Single-trial classification of awareness state during anesthesia by measuring critical dynamics of global brain activity
Cited by: 17
Author(s): Leandro M. Alonso, Guillermo Solovey, Toru Yanagawa, Alex Proekt, Guillermo A. Cecchi, Marcelo O. Magnasco
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1006184

Interplay of multiple pathways and activity-dependent rules in STDP
Cited by: 8
Author(s): Gaëtan Vignoud, Laurent Venance, Jonathan Touboul
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-45673-3

Precipitation extremes and depth-duration-frequency under internal climate variability
Cited by: 8
Author(s): Udit Bhatia, Auroop R. Ganguly
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-61180-2

Combined behavioral and electrophysiological evidence for a direct cortical effect of prefrontal tDCS on disorders of consciousness
Cited by: 50
Author(s): Bertrand Hermann, Federico Raimondo, Lukas Hirsch, Yu Huang, Mélanie Denis-Valente, Pauline Pérez, Denis A. Engemann, Frédéric Faugeras, Nicolas Weiss, Sophie Demeret, Benjamin Rohaut, Lucas C. Parra, Jacobo Sitt, Lionel Naccache
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-37835-6

Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations
Cited by: 20
Author(s): Sajal Dash, Nicholas A. Kinney, Robin Varghese, Harold R. Garner, Wu-chun Feng, Ramu Anandakrishnan
Software Mentions: 3
Published: almost 6 years ago

10.15252/embj.20105114

<scp>SARS</scp> ‐CoV‐2 receptor <scp>ACE</scp> 2 and <scp>TMPRSS</scp> 2 are primarily expressed in bronchial transient secretory cells
Cited by: 639
Author(s): Söeren Lukassen, Robert Lorenz Chua, Timo B. Trefzer, Nicolas Kahn, Marc A. Schneider, Thomas Muley, Hauke Winter, Michael Meister, Carmen Veith, Agnes W. Boots, Bianca P. Hennig, Michael Kreuter, Christian Conrad, Roland Eils
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-29390-x

Role of extrinsic mechanical force in the development of the RA-I tactile mechanoreceptor
Cited by: 0
Author(s): Trung Quang Pham, Takumi Kawaue, Takayuki Hoshi, Yoshihiro Tanaka, Takaki Miyata, Akihito Sano
Software Mentions: 3
Published: over 6 years ago

10.1242/dmm.047001

Transformed notochordal cells trigger chronic wounds in zebrafish, destabilizing the vertebral column and bone homeostasis
Cited by: 7
Author(s): Paco López-Cuevas, Luke Deane, Yuan Yang, Chrissy L. Hammond, Érika Kague
Software Mentions: 3
Published: over 3 years ago

10.3389/fnbot.2020.589532

Robust Trajectory Generation for Robotic Control on the Neuromorphic Research Chip Loihi
Cited by: 7
Author(s): Carlo Michaelis, Andrew B. Lehr, Christian Tetzlaff
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-36041-8

Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics
Cited by: 20
Author(s): Olivier Sheik Amamuddy, Nigel T. Bishop, Özlem Tastan Bishop
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pbio.3000814

Ratiometric quorum sensing governs the trade-off between bacterial vertical and horizontal antibiotic resistance propagation
Cited by: 4
Author(s): Alvaro Banderas, Arthur Carcano, Elisa Sia, Shuang Li, Ariel B. Lindner
Software Mentions: 3
Published: over 4 years ago

10.1242/dev.199459

Anterior expansion and posterior addition to the notochord mechanically coordinate zebrafish embryo axis elongation
Cited by: 10
Author(s): Susannah B. P. McLaren, Benjamin Steventon
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-17071-0

Bayesian Analysis of MicroScale Thermophoresis Data to Quantify Affinity of Protein:Protein Interactions with Human Survivin
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Author(s): María-José García-Bonete, Mikael Jensen, Christian V. Recktenwald, Sandra Rocha, Volker Stadler, Maria Bokarewa, Gergely Katona
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00330-020-07635-6

Radiomics score predicts acute respiratory distress syndrome based on the initial CT scan after trauma
Cited by: 9
Author(s): Sebastian Röhrich, Johannes Hofmanninger, Lukas Leopold Negrin, Georg Langs, Helmut Prosch
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btaa711

A semi-supervised learning framework for quantitative structure–activity regression modelling
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Author(s): Oliver P. Watson, Isidro Cortés-Ciriano, James A Watson
Software Mentions: 3
Published: over 4 years ago

10.3389/fneur.2020.578571

Cognitive Processing Impacts High Frequency Intracranial EEG Activity of Human Hippocampus in Patients With Pharmacoresistant Focal Epilepsy
Cited by: 5
Author(s): Jan Cimbálník, Martin Pail, Petr Klimeš, Vojtech Travnicek, Róbert Román, Adam Vajčner, Milan Brázdil
Software Mentions: 3
Published: about 4 years ago

10.1016/j.cub.2020.04.042

Two Distinct Types of Eye-Head Coupling in Freely Moving Mice
Cited by: 93
Author(s): Arne F. Meyer, John O’Keefe, Jasper Poort
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-17500-0

Blood plasma/IgG N-glycome biosignatures associated with major depressive disorder symptom severity and the antidepressant response
Cited by: 24
Author(s): Dong Ik Park, Jerko Štambuk, Genadij Razdorov, Maja Pučić‐Baković, Daniel Martins-de-Souza, Gordan Lauc, Christoph W. Turck
Software Mentions: 3
Published: almost 7 years ago

10.1111/tpj.13640

A computational approach for inferring the cell wall properties that govern guard cell dynamics
Cited by: 43
Author(s): Hugh Woolfenden, Gildas Bourdais, Michaela Kopischke, Eva Miedes, Antonio Molina, Silke Robatzek, Richard J. Morris
Software Mentions: 3
Published: about 7 years ago

10.3389/fnins.2018.00041

Understanding the Generation of Network Bursts by Adaptive Oscillatory Neurons
Cited by: 22
Author(s): Tanguy Fardet, Mathieu Ballandras, Samuel Bottani, Stéphane Métens, Pascal Monceau
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-40965-0

Transposable elements contribute to fungal genes and impact fungal lifestyle
Cited by: 49
Author(s): Anna Muszewska, Kamil Steczkiewicz, Marta M. Stepniewska-Dziubinska, Krzysztof Ginalski
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-76599-w

Integrating single-cell RNA-seq and imaging with SCOPE-seq2
Cited by: 15
Author(s): Zhouzerui Liu, Jinzhou Yuan, Anna Lasorella, Antonio Iavarone, Jeffrey N. Bruce, Peter Canoll, Peter A. Sims
Software Mentions: 3
Published: about 4 years ago

10.1038/srep42765

Duration of SHIV production by infected cells is not exponentially distributed: Implications for estimates of infection parameters and antiviral efficacy
Cited by: 31
Author(s): C. Beauchemin, Tomoyuki Miura, Shingo Iwami
Software Mentions: 3
Published: almost 8 years ago

10.1098/rstb.2013.0067

Attention in natural scenes: contrast affects rapid visual processing and fixations alike
Cited by: 27
Author(s): Bernard Marius ’t Hart, Hannah Claudia Elfriede Fanny Schmidt, Ingo Klein-Harmeyer, Wolfgang Einhäuser
Software Mentions: 3
Published: about 11 years ago

10.1093/bioinformatics/btaa928

BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences
Cited by: 14
Author(s): Aziz Khan, Rafael Riudavets Puig, Paul Boddie, Anthony Mathelier
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-017-1774-x

Repliscan: a tool for classifying replication timing regions
Cited by: 15
Author(s): Gregory J Zynda, Jawon Song, Lorenzo Concia, Emily E. Wear, Linda Hanley‐Bowdoin, William F. Thompson, Matthew Vaughn
Software Mentions: 3
Published: over 7 years ago

10.1038/s42003-021-01786-y

Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing
Cited by: 12
Author(s): Shimpei I. Kubota, Kei Takahashi, Tomoyuki Mano, Katsuhiko Matsumoto, Takahiro Katsumata, Shoi Shi, Kazuki Tainaka, Hiroki R. Ueda, Shogo Ehata, Kohei Miyazono
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-06741-8

Porcine familial adenomatous polyposis model enables systematic analysis of early events in adenoma progression
Cited by: 22
Author(s): Tatiana Flisikowska, Monika Stachowiak, Hongen Xu, Alexandra Wagner, Alejandra Hernandez-Caceres, Christine Wurmser, Carolin Perleberg, Hubert Pausch, Anna Perkowska, Konrad Fischer, Dmitrij Frishman, R. Fries, M. Świtoński, Alexander Kind, Dieter Saur, Angelika Schnieke, Krzysztof Flisikowski
Software Mentions: 3
Published: over 7 years ago

10.1038/srep11988

Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells
Cited by: 17
Author(s): Keith C. Heyde, Warren C. Ruder
Software Mentions: 3
Published: over 9 years ago

10.1038/s42003-020-01247-y

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
Cited by: 215
Author(s): Alma Andersson, Joseph Bergenstråhle, Michaela Asp, Ludvig Bergenstråhle, Aleksandra Jurek, José Fernández Navarro, Joakim Lundeberg
Software Mentions: 3
Published: about 4 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071