Projects: pypi: scikit-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn
A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month
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vanderplas@astro.washington.edu
bh00038@cvplws63.eps.surrey.ac.uk
ha258@cornell.edu
satra@mit.edu
zl2480@columbia.edu
pinto@alum.mit.edu
jz4721@nyu.edu
matteo.visconti.gr@dartmouth.edu
vighneshbirodkar@nyu.edu
robert.l.marchman@dartmouth.edu
rs2715@stern.nyu.edu
claire.savard@colorado.edu
aaaagrawal@iitb.ac.in
ihaque@cs.stanford.edu
rspeer@mit.edu
mluessi@nmr.mgh.harvard.edu
amitibo@tx.technion.ac.il
ericchang2017@u.northwestern.edu
jkarno@seas.upenn.edu
minghui.liu@trincoll.edu
m.lyra@sussex.ac.uk
andrew.knyazev@ucdenver.edu
lamb@cs.stanford.edu
camilo@neurostat.mit.edu
martino.sorbaro@ed.ac.uk
t.sheerman-chase@surrey.ac.uk
cgohlke@uci.edu
batulaa@drexel.edu
kcarnold@alum.mit.edu
apw@seas.harvard.edu
abie@alum.mit.edu
rossbar@berkeley.edu
alceballosa@unal.edu.co
fhoang7@berkeley.edu
hechen@seas.upenn.edu
stefan@sun.ac.za
deepyaman.datta@utexas.edu
rebekah.kim@columbia.edu
shubham.bhardwaj2015@vit.ac.in
slama@berkeley.edu
nisingh@wharton.upenn.edu
kanikas3@vt.edu
jdlabal@stanford.edu
kjells@uw.edu
markus.loning.17@ucl.ac.uk
k_nzw@klis.tsukuba.ac.jp
dkirkby@uci.edu
balawson@bu.edu
c.brummitt@columbia.edu
choo8@illinois.edu
giorgio.patrini@anu.edu.au
shangwuy@andrew.cmu.edu
rafael.possas@sydney.edu.au
olsonran@msu.edu
brian.mcfee@nyu.edu
naj273@nyu.edu
dgrusak@trinity.edu
emd222@cornell.edu
voth0@sewanee.edu
trishnendu.dd2014@cs.iiests.ac.in
apeng@berkeley.edu
boucher@cs.umass.edu
lunt@ctbp.ucsd.edu
bakhbari@mgh.harvard.edu
piraka@brandeis.edu
neal.lathia@cl.cam.ac.uk
razhoshia@post.bgu.ac.il
michal.romaniuk06@ic.ac.uk
m.batchkarov@sussex.ac.uk
lemin@cs.colostate.edu
rudvlf0413@korea.ac.kr
vredev16@msu.edu
raschkas@msu.edu
ali.baharev@univie.ac.at
a.krasoulis@sms.ed.ac.uk
arokem@berkeley.edu
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glemaitre@visor.udg.edu
naoyaiijima@hiroshima-u.ac.jp
ayushgup@iitk.ac.in
joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au
jam7w2@mail.missouri.edu
j.hale09@imperial.ac.uk
tw991@nyu.edu
patel_zeel@iitgn.ac.in
vincent.lostanlen@nyu.edu
stvjc@channing.harvard.edu
ritchieng@u.nus.edu
bansalsi@usc.edu
rbarnes@umn.edu
rrohan@cs.cmu.edu
liutong.zhou@columbia.edu
mdh386@nyu.edu
mlf419@nyu.edu
shreyave@usc.edu
jin.siy@northeastern.edu
samuel_ainsworth@brown.edu
cwijes1@lsu.edu
wadawson@ucdavis.edu
xinyuliu@umich.edu
rz258@cornell.edu
daniel.mallia21@myhunter.cuny.edu
argriffi@ncsu.edu
filipj@umich.edu
kms15@case.edu
sam.dixon@berkeley.edu
khong008@e.ntu.edu.sg
jnelso11@gmu.edu
jclawton@umich.edu
jaehyunahn@sogang.ac.kr
ijpulidos@unal.edu.co
gstupp@scripps.edu
justhube@umich.edu
noamkeidar@campus.technion.ac.il
nityamd@nyu.edu
css459@nyu.edu
alyee@ucsd.edu
andersk@mit.edu
dhanus@mit.edu
coreylevinson@uchicago.edu
cailean.carter@quadram.ac.uk
bral4884@colorado.edu
dschult@colgate.edu
dpwe@ee.columbia.edu
dylan.cashman@tufts.edu
pawelsendyk@berkeley.edu
qzhang90@gatech.edu
mhaberla@calpoly.edu
saketk@student.unimelb.edu.au
eunjikim@dm.snu.ac.kr
erinrhof@uw.edu
ksivaman@purdue.edu
garmstrong@ucsd.edu
konstantin.shmelkov@polytechnique.edu
e175774@ie.u-ryukyu.ac.jp
hermidal@cs.umd.edu
jbearer@hmc.edu
jmarin@csail.mit.edu
Repository Activity:
Repository Owner:
scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+2840
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142 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
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PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning scikit-learn 2,431
10.1177/2472555218820805
Evaluation of Machine Learning Classifiers to Predict Compound Mechanism of Action When Transferred across Distinct Cell LinesCited by: 12
Author(s): Scott J. Warchal, John C. Dawson, Neil O. Carragher
Software Mentions: 3
Published: over 6 years ago
10.3390/healthcare9070792
Post-Analysis of Predictive Modeling with an Epidemiological ExampleCited by: 0
Author(s): Christina Brester, Ari Voutilainen, Tomi‐Pekka Tuomainen, Jussi Kauhanen, Mikko Kolehmainen
Software Mentions: 3
Published: over 4 years ago
10.1016/j.heliyon.2021.e07356
Examining variable selection methods for the predictive performance of regression models and the proportion of selected variables and selected random variablesCited by: 7
Author(s): Hiromasa Kaneko
Software Mentions: 3
Published: over 4 years ago
10.3390/healthcare9050522
A Novel Method for COVID-19 Diagnosis Using Artificial Intelligence in Chest X-ray ImagesCited by: 54
Author(s): Yassir Edrees Almalki, Abdul Qayyum, Muhammad Irfan, Noman Haider, Adam Głowacz, Fahad Alshehri, Sharifa Khalid Alduraibi, Khalaf Alshamrani, Mohammad Abd Alkhalik Basha, Alaa Khalid Alduraibi, M.K. Saeed, Saifur Rahman
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0093344
Mapping Topographic Structure in White Matter Pathways with Level Set TreesCited by: 5
Author(s): Brian P. Kent, Alessandro Rinaldo, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 3
Published: over 11 years ago
10.1007/s13755-021-00161-9
The development of a machine learning algorithm to identify occupational injuries in agriculture using pre-hospital care reportsCited by: 4
Author(s): Erika Scott, Liane Hirabayashi, Alex Levenstein, Nicole Krupa, Paul Jenkins
Software Mentions: 3
Published: over 4 years ago
10.3390/molecules26061734
QSAR Models for Active Substances against Pseudomonas aeruginosa Using Disk-Diffusion Test DataCited by: 5
Author(s): Cosmin Alexandru Bugeac, Robert Ancuceanu, Mihaela Dinu
Software Mentions: 3
Published: over 4 years ago
10.1136/gutjnl-2018-317071
Fine needle aspirates comprehensively sample intrahepatic immunityCited by: 60
Author(s): Upkar S. Gill, Laura J. Pallett, Niclas Thomas, Alice R. Burton, Amit A. Patel, Simon Yona, Patrick Kennedy, Mala K. Maini
Software Mentions: 3
Published: almost 7 years ago
10.1074/mcp.O115.055467
Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation ProfilingCited by: 61
Author(s): Mark Larance, Kathryn J. Kirkwood, Michele Tinti, Alejandro Brenes Murillo, Michael A. J. Ferguson, Angus I. Lamond
Software Mentions: 3
Published: over 9 years ago
10.1016/j.mcpro.2021.100096
Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord InjuryCited by: 14
Author(s): Michael A. Skinnider, Jason C. Rogalski, Seth Tigchelaar, Neda Manouchehri, Anna Prudova, Angela Jackson, Karina Nielsen, Jaihyun Jeong, Shalini Chaudhary, Katelyn Shortt, Ylonna Gallagher-Kurtzke, Kitty So, Allan Fong, Rishab Gupta, Elena B. Okon, Michael A. Rizzuto, Kevin Dong, Femke Streijger, Lise Bélanger, Leanna Ritchie, Angela Tsang, Sean Christie, Jean-Marc Mac-Thiong, Chris Bailey, Tamir Ailon, Raphaële Charest-Morin, Nicolas Dea, Jefferson R. Wilson, Sanjay S. Dhall, Scott Paquette, John Street, Charles G. Fisher, Marcel F. Dvorak, Casey P. Shannon, Christoph H. Borchers, Robert Balshaw, Leonard J. Foster, Brian K. Kwon
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.203071
Development and validation of a nomogram for predicting stroke risk in rheumatoid arthritis patientsCited by: 2
Author(s): Fangran Xin, Ling Fu, Bowen Yang, Haina Liu, Tingting Wei, Cunlu Zou, Bingqing Bai
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0219452
Prediction of disease-associated mutations in the transmembrane regions of proteins with known 3D structureCited by: 17
Author(s): Petr Popov, Ilya V. Bizin, M. Michael Gromiha, A. Kulandaisamy, Dmitrij Frishman
Software Mentions: 3
Published: over 6 years ago
10.1093/gigascience/giaa062
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systemsCited by: 27
Author(s): Victor Alexandre Padilha, Omer S. Alkhnbashi, Shiraz A. Shah, André C. P. L. F. de Carvalho, Rolf Backofen
Software Mentions: 3
Published: over 5 years ago
10.1093/molbev/msab195
Molecular Evolutionary Dynamics of Energy Limited MicroorganismsCited by: 3
Author(s): William R. Shoemaker, Evgeniya Polezhaeva, Kenzie B. Givens, Jay T. Lennon
Software Mentions: 3
Published: over 4 years ago
10.1186/s13229-020-00396-5
Combined frequency-tagging EEG and eye-tracking measures provide no support for the “excess mouth/diminished eye attention” hypothesis in autismCited by: 9
Author(s): Sofie Vettori, Stephanie Van der Donck, Jannes Nys, Pieter Moors, Tim Van Wesemael, Jean Steyaert, Bruno Rossion, Milena Dzhelyova, Bart Boets
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12859-018-2448-z
Learning protein binding affinity using privileged informationCited by: 28
Author(s): Wajid Arshad Abbasi, Amina Asif, Asa Ben-Hur, Fayyaz Minhas
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41379-020-0640-y
Artificial intelligence assistance significantly improves Gleason grading of prostate biopsies by pathologistsCited by: 74
Author(s): Wouter Bulten, Maschenka Balkenhol, Jean-Joël Awoumou Belinga, Américo Brilhante, Aslı Çakir, Lars Egevad, Martin Eklund, Xavier Farré, Katerina Geronatsiou, Vincent Molinié, Guilherme Martins Pereira, Paromita Roy, Günter Saile, Paulo G. O. Salles, Ewout Schaafsma, Joëlle Tschui, Anne-Marie Vos, ISUP Pathology Imagebase Expert Panel, Hester van Boven, Robert Vink, Jeroen van der Laak, Christina Hulsbergen-van der Kaa, Geert Litjens, Brett Delahunt, Hemamali Samaratunga, David J. Grignon, Andrew Evans, Daniel M. Berney, Chin-Chen Pan, Glen Kristiansen, James G. Kench, Jon Oxley, Kátia Ramos Moreira Leite, Jesse K. McKenney, Peter A. Humphrey, Samson W. Fine, Toyonori Tsuzuki, Murali Varma, Ming Zhou, Éva Compérat, David G. Bostwick, Kenneth A. Iczkowski, Cristina Magi‐Galluzzi, John R. Srigley, Hiroyuki Takahashi, Theo van der Kwast
Software Mentions: 3
Published: over 4 years ago
10.1186/s12880-021-00654-9
Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scansCited by: 5
Author(s): Scherwin Mahmoudi, Simon S. Martin, Jörg Ackermann, Yauheniya Zhdanovich, Ina Koch, Thomas J. Vogl, Moritz H. Albrecht, Lukas Lenga, Simon Bernatz
Software Mentions: 3
Published: about 4 years ago
10.3390/microorganisms8030438
The Interplay between Mucosal Microbiota Composition and Host Gene-Expression is Linked with Infliximab Response in Inflammatory Bowel DiseasesCited by: 41
Author(s): Nikolas Dovrolis, George Michalopoulos, George Theodoropoulos, Konstantinos Arvanitidis, George Kolios, Leonardo Antonio Sechi, Aristidis G. Eliopoulos, Maria Gazouli
Software Mentions: 3
Published: over 5 years ago
10.1016/j.gpb.2019.09.004
Machine Learning to Detect Alzheimer’s Disease from Circulating Non-coding RNAsCited by: 63
Author(s): Nicole Ludwig, Tobias Fehlmann, Fabian Kern, M. Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna‐Katharina von Thaler, Christian Deuschle, Florian Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 3
Published: over 6 years ago
10.1016/j.omtn.2020.06.004
Prediction of m5C Modifications in RNA Sequences by Combining Multiple Sequence FeaturesCited by: 31
Author(s): Lijun Dou, Xiaoling Li, Hui Ding, Lei Xu, Hong‐Bing Xiang
Software Mentions: 3
Published: about 5 years ago
10.1093/gigascience/gix096
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycleCited by: 24
Author(s): Valerie De Anda, Icoquih Zapata‐Peñasco, Augusto César Poot-Hernández, Luis E. Eguiarte, Bruno Contreras‐Moreira, Valeria Souza
Software Mentions: 3
Published: about 8 years ago
10.1186/s13073-020-00796-5
Integrated analysis of microbiome and host transcriptome reveals correlations between gut microbiota and clinical outcomes in HBV-related hepatocellular carcinomaCited by: 73
Author(s): Hechen Huang, Zhigang Ren, Xingxing Gao, Xiaoyi Hu, Yuan Zhou, Jianwen Jiang, Haifeng Lü, Shengyong Yin, Junfang Ji, Lin Zhou, Shusen Zheng
Software Mentions: 3
Published: almost 5 years ago
10.1107/S1399004715004241
Using support vector machines to improve elemental ion identification in macromolecular crystal structuresCited by: 4
Author(s): Nader Morshed, Nathaniel Echols, Paul D. Adams
Software Mentions: 3
Published: over 10 years ago
10.1186/s12920-017-0264-3
Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancersCited by: 7
Author(s): Julia Herman-Iżycka, Michał Wlasnowolski, Bartek Wilczyński
Software Mentions: 3
Published: over 8 years ago
10.1186/s40168-018-0450-3
Similarity of the dog and human gut microbiomes in gene content and response to dietCited by: 185
Author(s): Luís Pedro Coelho, Jens Roat Kultima, Paul Igor Costea, Coralie Fournier, Yuanlong Pan, Gail L. Czarnecki-Maulden, Matthew R. Hayward, Kristoffer Forslund, Thomas Sebastian Benedikt Schmidt, Patrick Descombes, Janet R. Jackson, Qinghong Li, Peer Bork
Software Mentions: 3
Published: over 7 years ago
10.1016/j.mex.2020.100920
Training LSTM-neural networks on early warning signals of declining cooperation in simulated repeated public good gamesCited by: 5
Author(s): Manfred Füllsack, Marie Lisa Kapeller, Simon Plakolb, Georg Jäger
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12920-019-0613-5
Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cellsCited by: 19
Author(s): Yen Jung Chiu, Yi Hsuan Hsieh, Yen Hua Huang
Software Mentions: 3
Published: almost 6 years ago
10.3390/metabo10100416
A Python-Based Pipeline for Preprocessing LC–MS Data for Untargeted Metabolomics WorkflowsCited by: 22
Author(s): Gabriel Riquelme, Nicolás Zabalegui, Pablo Marchi, Christina M. Jones, Marı́a Eugenia Monge
Software Mentions: 3
Published: about 5 years ago
10.3390/metabo10100393
BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and ClassificationCited by: 5
Author(s): Peter Weber, Josch Pauling, Markus List, Jan Baumbach
Software Mentions: 3
Published: about 5 years ago
10.1186/s13148-021-01110-9
Altered DNA methylation pattern reveals epigenetic regulation of Hox genes in thoracic aortic dissection and serves as a biomarker in disease diagnosisCited by: 5
Author(s): Peiru Liu, Jing Zhang, Duo Du, Dandan Zhang, Zelin Jin, Qiu Wan-hua, Xinchen Zhou, Sujun Dong, Mengyu Zhou, Heyu Zhao, Wei Zhang, Jiakang Ma, Song Sun, Weiguo Fu, Yun Liu, Lixin Wang
Software Mentions: 3
Published: over 4 years ago
10.1039/d1sc00145k
High-resolution mining of the SARS-CoV-2 main protease conformational space: supercomputer-driven unsupervised adaptive samplingCited by: 31
Author(s): Théo Jaffrelot Inizan, Frédéric Célerse, Olivier Adjoua, Dina El Ahdab, Luc‐Henri Jolly, Chengwen Liu, Pengyu Ren, Matthieu Montès, Nathalie Lagarde, Louis Lagardère, Pierre Monmarché, Jean‐Philip Piquemal
Software Mentions: 3
Published: almost 5 years ago
10.1186/s13059-020-02019-x
A human lung tumor microenvironment interactome identifies clinically relevant cell-type cross-talkCited by: 31
Author(s): Andrew J. Gentles, Angela Bik‐Yu Hui, Weiguo Feng, Armon Azizi, Ramesh V. Nair, Gina Bouchard, David A. Knowles, Alice L. Yu, Youngtae Jeong, Alborz Bejnood, Erna Forgó, Sushama Varma, Yue Xu, Amanda Kuong, Viswam S. Nair, Robert B. West, Matt van de Rijn, Chuong D. Hoang, Maximilian Diehn, Sylvia K. Plevritis
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-47493-x
Strategies and limitations in app usage and human mobilityCited by: 24
Author(s): Marco De Nadai, Ângelo Cardoso, Antonio Lima, Bruno Lepri, Núria Oliver
Software Mentions: 3
Published: over 6 years ago
10.1186/s13059-019-1854-5
Assessment of computational methods for the analysis of single-cell ATAC-seq dataCited by: 197
Author(s): Huidong Chen, Caleb A. Lareau, Tommaso Andreani, Michael Vinyard, Sara P. Garcia, Kendell Clement, Miguel A. Andrade‐Navarro, Jason D. Buenrostro, Luca Pinello
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13059-020-02253-3
SPIN reveals genome-wide landscape of nuclear compartmentalizationCited by: 52
Author(s): Yuchuan Wang, Yang Zhang, Ruochi Zhang, Tom van Schaik, Liguo Zhang, Takayo Sasaki, Daniel Peric-Hupkes, Yu Chen, David M. Gilbert, Bas van Steensel, Andrew S. Belmont, Jian Ma
Software Mentions: 3
Published: almost 5 years ago
10.1016/j.celrep.2021.109730
Anipose: A toolkit for robust markerless 3D pose estimationCited by: 85
Author(s): Pierre Karashchuk, Katie L. Rupp, Evyn S Dickinson, Sarah Walling-Bell, Elischa Sanders, Eiman Azim, Bingni W. Brunton, John C. Tuthill
Software Mentions: 3
Published: about 4 years ago
10.3390/ma14040713
On the Use of Machine Learning Models for Prediction of Compressive Strength of Concrete: Influence of Dimensionality Reduction on the Model PerformanceCited by: 34
Author(s): Zhi Wan, Yading Xu, Branko Šavija
Software Mentions: 3
Published: almost 5 years ago
10.1186/s13059-018-1599-6
Predicting age from the transcriptome of human dermal fibroblastsCited by: 126
Author(s): Jason G. Fleischer, Roberta Schulte, Hsiao Tsai, Swati Tyagi, Arkaitz Ibarra, Maxim N. Shokhirev, Ling Huang, Martin W. Hetzer, Saket Navlakha
Software Mentions: 3
Published: almost 7 years ago
10.1186/s13059-017-1186-2
Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatmentCited by: 232
Author(s): Tina Wang, Brian Tsui, Jason F. Kreisberg, Neil Robertson, Andrew M. Gross, Michael Yu, Hannah Carter, Holly M. Brown–Borg, Peter D. Adams, Trey Ideker
Software Mentions: 3
Published: over 8 years ago
10.1186/s13059-019-1644-0
Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityCited by: 57
Author(s): Stephanie M. Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis J. McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle, Marc Jan Bonder
Software Mentions: 3
Published: over 6 years ago
10.1534/g3.116.033654
Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep LearningCited by: 112
Author(s): Tanel Pärnamaa, Leopold Parts
Software Mentions: 3
Published: over 8 years ago
10.3390/genes9090424
Human Age Prediction Based on DNA Methylation Using a Gradient Boosting RegressorCited by: 41
Author(s): Xingyan Li, Weidong Li, Yan Xu
Software Mentions: 3
Published: about 7 years ago
10.3390/cancers13061192
Homology-Based Image Processing for Automatic Classification of Histopathological Images of Lung TissueCited by: 38
Author(s): Motohiro Nishio, Masaki Nishio, Naoe Jimbo, Kazuaki Nakane
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers12061593
Sex-Specific Differences in Primary CNS LymphomaCited by: 2
Author(s): Thomas Roetzer, Julia Furtner, Johanna Gesperger, Lukas Seebrecht, Dave Bandke, Martina Brada, Tanisa Brandner-Kokalj, Astrid Grams, Johannes Haybaeck, Melitta Kitzwoegerer, Stefan Leber, Franz Marhold, Patrizia Moser, Camillo Sherif, Johannes Trenkler, Julia Judith Unterluggauer, Serge Weis, Franz Wuertz, Johannes A. Hainfellner, Georg Langs, Karl-Heinz Nenning, Adelheid Wöehrer
Software Mentions: 3
Published: over 5 years ago
10.3390/genes9060300
Automated Recognition of RNA Structure Motifs by Their SHAPE Data SignaturesCited by: 10
Author(s): Pierce Radecki, Mirko Ledda, Sharon Aviran
Software Mentions: 3
Published: over 7 years ago
10.3390/genes12020186
VIRMOTIF: A User-Friendly Tool for Viral Sequence AnalysisCited by: 17
Author(s): Pedram Rajaei, Khadijeh Jahanian, Amin Beheshti, Shahab S. Band, Abdollah Dehzangi, Hamid Alinejad‐Rokny
Software Mentions: 3
Published: almost 5 years ago
10.3390/cancers13020339
Radiomics and Dosiomics for Predicting Local Control after Carbon-Ion Radiotherapy in Skull-Base ChordomaCited by: 20
Author(s): Giulia Buizza, Chiara Paganelli, E. D’Ippolito, Giulia Fontana, Silvia Molinelli, Lorenzo Preda, Giulia Riva, Alberto Iannalfi, Francesca Valvo, Ester Orlandi, Guido Baroni
Software Mentions: 3
Published: almost 5 years ago
10.1093/g3journal/jkab129
Genetic basis of offspring number–body weight tradeoff in <i>Drosophila melanogaster</i>Cited by: 5
Author(s): Jamilla Akhund-Zade, Shraddha Lall, Erika Gajda, Denise Yoon, Julien F. Ayroles, Benjamin L. de Bivort
Software Mentions: 3
Published: over 4 years ago
10.1007/s10994-017-5685-x
Meta-QSAR: a large-scale application of meta-learning to drug design and discoveryCited by: 58
Author(s): Iván Olier, Noureddin Sadawi, G. Richard J. Bickerton, Joaquin Vanschoren, Crina Groşan, Larisa Soldatova, Ross D. King
Software Mentions: 3
Published: almost 8 years ago
10.3390/cancers13081796
Multi-View Data Integration Methods for Radiotherapy Structure Name StandardizationCited by: 4
Author(s): Khajamoinuddin Syed, William C. Sleeman, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 3
Published: over 4 years ago
10.3390/genes9020104
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression ModelsCited by: 69
Author(s): Aeriel D. Belk, Zhenjiang Zech Xu, David Carter, Aaron M. Lynne, Sibyl R. Bucheli, Rob Knight, Jessica L. Metcalf
Software Mentions: 3
Published: over 7 years ago
10.3390/cancers13061294
An AI-Powered Blood Test to Detect Cancer Using NanoDSFCited by: 7
Author(s): Philipp O. Tsvetkov, Rémi Eyraud, Stéphane Ayache, Anton Bougaev, Soazig Malesinski, Hamed Benazha, Svetlana Gorokhova, Christophe Buffat, Caroline Dehais, Marc Sanson, Franck Bielle, Dominique Figarella Branger, Olivier Chinot, Émeline Tabouret, François Devred
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-019-2900-8
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysisCited by: 10
Author(s): Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Software Mentions: 3
Published: over 6 years ago
10.1038/s41374-021-00612-7
A new technological approach in diagnostic pathology: mass spectrometry imaging-based metabolomics for biomarker detection in urachal cancerCited by: 10
Author(s): Judith Martha Neumann, Karsten Niehaus, Nils Neumann, Hans Christoph Knobloch, Felix Bremmer, Ulrich Krafft, Udo Kellner, Péter Nyírády, Tibor Szarvas, Hanna Bednarz, Henning Reis
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0204938
“Is a picture really worth a thousand words?”: A case study on classifying user attributes on InstagramCited by: 21
Author(s): Junho Song, Kyungsik Han, Dongwon Lee, Sang Wook Kim
Software Mentions: 3
Published: about 7 years ago
10.3390/ma13102317
Feature Importance of Stabilised Rammed Earth Components Affecting the Compressive Strength Calculated with Explainable Artificial Intelligence ToolsCited by: 27
Author(s): Hubert Anysz, Łukasz Brzozowski, Wojciech Kretowicz, Piotr Narloch
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-020-07237-y
Predicting Long non-coding RNAs through feature ensemble learningCited by: 3
Author(s): Yanzhen Xu, Xiaohan Zhao, Shuai Liu, Wen Zhang
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0239781
A theoretical morphological model for quantitative description of the three-dimensional floral morphology in water lily (Nymphaea)Cited by: 1
Author(s): Shiryu Kirié, Hideo Iwasaki, Koji Noshita, Hiroyoshi Iwata
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0250753
Automated analysis of bacterial flow cytometry data with FlowGateNISTCited by: 7
Author(s): David Ross
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0183889
Elastic network model of learned maintained contacts to predict protein motionCited by: 13
Author(s): Ines Putz, Oliver Brock
Software Mentions: 3
Published: about 8 years ago
10.1177/1176935120965542
Robust Distance Measures for <i>k</i>NN Classification of Cancer DataCited by: 27
Author(s): Rezvan Ehsani, Finn Drabløs
Software Mentions: 3
Published: almost 6 years ago
10.1534/g3.116.035915
Predictability of Genetic Interactions from Functional Gene ModulesCited by: 9
Author(s): Jonathan H. Young, Edward M. Marcotte
Software Mentions: 3
Published: almost 9 years ago
10.1186/s13059-016-1012-2
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPORCited by: 1,224
Author(s): Maximilian Haeussler, Kai Shi, Hélène Eckert, Alexis Eschstruth, Joffrey Mianné, Jean Renaud, Sylvie Schneider‐Maunoury, Alena Shkumatava, Lydia Teboul, J. H. Kent, Jean‐Stéphane Joly, Jean‐Paul Concordet
Software Mentions: 3
Published: over 9 years ago
10.1007/s00280-019-03797-3
A novel method to address the association between received dose intensity and survival outcome: benefits of approaching treatment intensification at a more individualised level in a trial of the European Osteosarcoma IntergroupCited by: 18
Author(s): Carlo Lancia, Jakob Anninga, Matthew R. Sydes, Cristian Spitoni, Jeremy S Whelan, Pancras C.W. Hogendoorn, Hans Gelderblom, Marta Fiocco
Software Mentions: 3
Published: over 6 years ago
10.1186/s12864-018-4665-2
Prediction of plant lncRNA by ensemble machine learning classifiersCited by: 48
Author(s): Caitlin M. A. Simopoulos, Elizabeth A. Weretilnyk, G. Brian Golding
Software Mentions: 3
Published: over 7 years ago
10.1089/crispr.2020.0022
Deconvolution of Complex DNA Repair (DECODR): Establishing a Novel Deconvolution Algorithm for Comprehensive Analysis of CRISPR-Edited Sanger Sequencing DataCited by: 39
Author(s): Kevin Bloh, Rohan Kanchana, Pawel Bialk, Kelly Banas, Zugui Zhang, Byung-Chun Yoo, Eric B. Kmiec
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphys.2020.575968
Investigating Mitonuclear Genetic Interactions Through Machine Learning: A Case Study on Cold Adaptation Genes in Human Populations From Different European Climate RegionsCited by: 1
Author(s): Alena Kalyakulina, Vincenzo Iannuzzi, Marco Sazzini, Paolo Garagnani, Sarika Jalan, Claudio Franceschi, Mikhail Ivanchenko, Cristina Giuliani
Software Mentions: 3
Published: almost 5 years ago
10.3390/brainsci10120921
Mindfulness, Interoception, and Olfaction: A Network ApproachCited by: 8
Author(s): Barbara Lefranc, Charles Martin‐Krumm, Charlotte Aufauvre-Poupon, Benoit Berthail, Marion Trousselard
Software Mentions: 3
Published: almost 5 years ago
10.1107/S1399004715000383
<i>Brickworx</i>builds recurrent RNA and DNA structural motifs into medium- and low-resolution electron-density mapsCited by: 8
Author(s): Grzegorz Chojnowski, Tomasz Waleń, Paweł Piątkowski, Wojciech Potrzebowski, Janusz M. Bujnicki
Software Mentions: 3
Published: over 10 years ago
10.3389/fphar.2019.01054
Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk AssessmentCited by: 14
Author(s): Jaimit Parikh, Paolo Di Achille, James Kozloski, Viatcheslav Gurev
Software Mentions: 3
Published: about 6 years ago
10.3389/fphys.2021.644349
Deep Shape Features for Predicting Future Intracranial Aneurysm GrowthCited by: 5
Author(s): Žiga Bizjak, Franjo Pernuš, Žiga Špiclin
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0165556
Is Neural Activity Detected by ERP-Based Brain-Computer Interfaces Task Specific?Cited by: 6
Author(s): Markus Wenzel, Inês Almeida, Benjamin Blankertz
Software Mentions: 3
Published: about 9 years ago
10.3389/fphar.2021.660313
AI-Based Drug Discovery of TKIs Targeting L858R/T790M/C797S-Mutant EGFR in Non-small Cell Lung CancerCited by: 7
Author(s): Gyeong Man Choi, Daegeun Kim, Junehwan Oh
Software Mentions: 3
Published: over 4 years ago
10.3389/fphar.2019.01690
SAMbinder: A Web Server for Predicting S-Adenosyl-L-Methionine Binding Residues of a Protein From Its Amino Acid SequenceCited by: 3
Author(s): Piyush Agrawal, Gaurav Mishra, Gajendra P. S. Raghava
Software Mentions: 3
Published: almost 6 years ago
10.3389/fphar.2018.00270
Uncovering the Mechanisms of Chinese Herbal Medicine (MaZiRenWan) for Functional Constipation by Focused Network Pharmacology ApproachCited by: 36
Author(s): Tao Huang, Ziwan Ning, Dong-Dong Hu, Man Zhang, Ling Zhao, Chengyuan Lin, Linda L. D. Zhong, Zhijun Yang, Xu Hong, Zhaoxiang Bian
Software Mentions: 3
Published: over 7 years ago
10.1186/s12859-019-2892-4
MHCSeqNet: a deep neural network model for universal MHC binding predictionCited by: 48
Author(s): Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0227788
Blind method for discovering number of clusters in multidimensional datasets by regression on linkage hierarchies generated from random dataCited by: 0
Author(s): Osbert C. Zalay
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12864-020-07185-7
Triage of documents containing protein interactions affected by mutations using an NLP based machine learning approachCited by: 7
Author(s): Jinchan Qu, Albert Steppi, Dongrui Zhong, Jie Hao, Jian Wang, Pei-Yau Lung, Tingting Zhao, Zhe He, Jinfeng Zhang
Software Mentions: 3
Published: almost 5 years ago
10.3390/metabo11010013
SeMPI 2.0—A Web Server for PKS and NRPS Predictions Combined with Metabolite Screening in Natural Product DatabasesCited by: 14
Author(s): Paul Zierep, Adriana Teresa Ceci, Ilia Dobrusin, Sinclair C Rockwell-Kollmann, Stefan Günther
Software Mentions: 3
Published: almost 5 years ago
10.3389/fonc.2020.598721
Deep CNN Model Using CT Radiomics Feature Mapping Recognizes EGFR Gene Mutation Status of Lung AdenocarcinomaCited by: 24
Author(s): Baihua Zhang, Shouliang Qi, Pan Xu, Chen Li, Yu-Dong Yao, Wei Qian, Yubao Guan
Software Mentions: 3
Published: over 4 years ago
10.1007/s41109-018-0087-y
An illustrated approach to Soft Textual CartographyCited by: 1
Author(s): Raphaël Ceré, Mattia Egloff
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0174698
A general approach for predicting the behavior of the Supreme Court of the United StatesCited by: 194
Author(s): Daniel Katz, Michael James Bommarito, Josh Blackman
Software Mentions: 3
Published: over 8 years ago
10.1038/s42003-020-01143-5
Host-parasite tissue adhesion by a secreted type of β-1,4-glucanase in the parasitic plant Phtheirospermum japonicumCited by: 26
Author(s): Ken-ichi Kurotani, Takanori Wakatake, Yasunori Ichihashi, Koji Okayasu, Yu Sawai, Satoshi Ogawa, Songkui Cui, Takamasa Suzuki, Ken Shirasu, Michitaka Notaguchi
Software Mentions: 3
Published: over 5 years ago
10.1186/s12859-021-04348-5
DELEAT: gene essentiality prediction and deletion design for bacterial genome reductionCited by: 2
Author(s): Jimena Solana, Emilio Garrote-Sánchez, Rosario Gil
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0250278
Molecular subtyping of Alzheimer’s disease with consensus non-negative matrix factorizationCited by: 14
Author(s): Chunlei Zheng, Rong Xu
Software Mentions: 3
Published: over 4 years ago
10.7554/eLife.56890
Diverse homeostatic and immunomodulatory roles of immune cells in the developing mouse lung at single cell resolutionCited by: 27
Author(s): Racquel Domingo-Gonzalez, Fabio Zanini, Xibing Che, Min Liu, Robert C. Jones, Michael Swift, Stephen R. Quake, David N. Cornfield, Cristina M. Alvira
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2018.00035
Design and Selection of Machine Learning Methods Using Radiomics and Dosiomics for Normal Tissue Complication Probability Modeling of XerostomiaCited by: 96
Author(s): Hubert S. Gabryś, Florian Buettner, Florian Sterzing, Henrik Hauswald, Mark Bangert
Software Mentions: 3
Published: over 7 years ago
10.3389/fonc.2021.621278
Subgroup-Independent Mapping of Renal Cell Carcinoma—Machine Learning Reveals Prognostic Mitochondrial Gene Signature Beyond Histopathologic BoundariesCited by: 30
Author(s): André Marquardt, Antonio Giovanni Solimando, Alexander Kerscher, Max Bittrich, Charis Kalogirou, Hubert Kübler, Andreas Rosenwald, Ralf C. Bargou, Philip Kollmannsberger, Bastian Schilling, Svenja Meierjohann, Markus Krebs
Software Mentions: 3
Published: over 4 years ago
10.3389/fonc.2020.00592
A Computed Tomography-Based Radiomics Nomogram to Preoperatively Predict Tumor Necrosis in Patients With Clear Cell Renal Cell CarcinomaCited by: 3
Author(s): Yi Jiang, Wuchao Li, Chencui Huang, Chong Tian, Qi Chen, Xian‐Chun Zeng, Yin Chen, Yi Chen, Yintong Yang, Heng Liu, Yonghua Bo, Chenggong Luo, Yiming Li, Tijiang Zhang, Rongping Wang
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.51975
Elements of a stochastic 3D prediction engine in larval zebrafish prey captureCited by: 28
Author(s): Andrew D. Bolton, Martin Haesemeyer, Josua Jordi, Ulrich Schaechtle, Feras A. Saad, Vikash K. Mansinghka, Joshua B. Tenenbaum, Florian Engert
Software Mentions: 3
Published: almost 6 years ago
10.3390/bios9010029
Differentiation of Patients with Balance Insufficiency (Vestibular Hypofunction) versus Normal Subjects Using a Low-Cost Small Wireless Wearable Gait SensorCited by: 9
Author(s): Tam Nguyên, Jonathan H. Young, Amanda Rodriguez, Steven Zupancic, Donald Y. C. Lie
Software Mentions: 3
Published: over 6 years ago
10.7554/eLife.54055
Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkersCited by: 60
Author(s): Denis A. Engemann, Oleh Kozynets, David Sabbagh, G Lemaître, Gaël Varoquaux, Franziskus Liem, Alexandre Gramfort
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2021.661244
DeepCUBIT: Predicting Lymphovascular Invasion or Pathological Lymph Node Involvement of Clinical T1 Stage Non-Small Cell Lung Cancer on Chest CT Scan Using Deep Cubical Nodule Transfer Learning AlgorithmCited by: 5
Author(s): Kyongmin Sarah Beck, Bomi Gil, Sae Jung Na, Ji Hyung Hong, Sang Hoon Chun, Ho Jung An, Jae Jun Kim, Soon Auck Hong, Bora Lee, Won Sang Shim, Sung Soo Park, Yoon Ho Ko
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0249423
Predicting student satisfaction of emergency remote learning in higher education during COVID-19 using machine learning techniquesCited by: 52
Author(s): Indy Man Kit Ho, K.Y. Cheong, Anthony Weldon
Software Mentions: 3
Published: over 4 years ago
10.1186/s12885-021-08276-8
Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancerCited by: 6
Author(s): Yichao Li, Sushila Jaiswal, Rupleen Kaur, Dana Alsaadi, Xiaoyu Liang, Frank A. Drews, Julie A. DeLoia, Thomas C. Krivak, Hanna M. Petrykowska, Valer Gotea, Lonnie R. Welch, Laura Elnitski
Software Mentions: 3
Published: over 4 years ago
10.7554/eLife.46935
Deep generative models for T cell receptor protein sequencesCited by: 57
Author(s): Kristian Davidsen, Branden J Olson, William S DeWitt, Jean Feng, Elias Harkins, Philip Bradley, F. A. Matsen
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.52707
The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapiesCited by: 19
Author(s): Jennifer E. L. Diaz, Mehmet Eren Ahsen, Thomas Schaffter, Xintong Chen, Ronald Realubit, Charles Karan, Andrea Califano, Bojan Losic, Gustavo Stolovitzky
Software Mentions: 3
Published: about 5 years ago
10.1038/s41388-020-01614-3
Comprehensive characterisation of intronic mis-splicing mutations in human cancersCited by: 20
Author(s): Hyunchul Jung, Kang Seon Lee, Jung Kyoon Choi
Software Mentions: 3
Published: almost 5 years ago
10.3389/fnins.2021.691244
MRI Radiomic Signature of White Matter Hyperintensities Is Associated With Clinical PhenotypesCited by: 9
Author(s): Martin Bretzner, Anna K. Bonkhoff, Markus D. Schirmer, Sungmin Hong, Adrian V. Dalca, Kathleen Donahue, Anne‐Katrin Giese, Mark R. Etherton, Pamela M. Rist, Marco Nardin, Rǎzvan V. Marinescu, Clinton Wang, Robert W Regenhardt, Xavier Leclerc, Renaud Lopes, Oscar Benavente, John W. Cole, Amanda Donatti, Christoph J. Griessenauer, Laura Heitsch, Lukas Holmegaard, Katarina Jood, Jordi Jiménez‐Conde, Steven J. Kittner, Robin Lemmens, Christopher Levi, Patrick F. McArdle, Caitrin W. McDonough, James F. Meschia, Chia‐Ling Phuah, Arndt Rolfs, Stefan Ropele, Jonathan Rosand, Jaume Roquer, Tatjana Rundek, Ralph L. Sacco, Reinhold Schmidt, Pankaj Sharma, Agnieszka Słowik, Alessandro Sousa, Tara M. Stanne, Daniel Strbian, Turgut Tatlısumak, Vincent Thijs, Achala Vagal, Johan Wassélius, Daniel Woo, Ona Wu, Ramin Zand, Bradford B. Worrall, Jane Maguire, Arne Lindgren, Christina Jern, Polina Golland, Grégory Kuchcinski, Natalia S. Rost
Software Mentions: 3
Published: over 4 years ago