Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: almost 3 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.1523/ENEURO.0038-20.2020
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
Cited by: 11
Author(s): Julien Denis, Robin F Dard, Eleonora Quiroli, Rosa Cossart, Michel A. Picardo
Software Mentions: 3
Published: over 6 years ago
10.1186/s12920-017-0264-3
Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers
Cited by: 7
Author(s): Julia Herman-Iżycka, Michał Wlasnowolski, Bartek Wilczyński
Software Mentions: 3
Published: over 9 years ago
10.1186/s40168-018-0450-3
Similarity of the dog and human gut microbiomes in gene content and response to diet
Cited by: 185
Author(s): Luís Pedro Coelho, Jens Roat Kultima, Paul Igor Costea, Coralie Fournier, Yuanlong Pan, Gail L. Czarnecki-Maulden, Matthew R. Hayward, Kristoffer Forslund, Thomas Sebastian Benedikt Schmidt, Patrick Descombes, Janet R. Jackson, Qinghong Li, Peer Bork
Software Mentions: 3
Published: over 8 years ago
10.1016/j.mex.2020.100920
Training LSTM-neural networks on early warning signals of declining cooperation in simulated repeated public good games
Cited by: 5
Author(s): Manfred Füllsack, Marie Lisa Kapeller, Simon Plakolb, Georg Jäger
Software Mentions: 3
Published: almost 7 years ago
10.3389/fonc.2020.598721
Deep CNN Model Using CT Radiomics Feature Mapping Recognizes EGFR Gene Mutation Status of Lung Adenocarcinoma
Cited by: 24
Author(s): Baihua Zhang, Shouliang Qi, Pan Xu, Chen Li, Yu-Dong Yao, Wei Qian, Yubao Guan
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2020.575968
Investigating Mitonuclear Genetic Interactions Through Machine Learning: A Case Study on Cold Adaptation Genes in Human Populations From Different European Climate Regions
Cited by: 1
Author(s): Alena Kalyakulina, Vincenzo Iannuzzi, Marco Sazzini, Paolo Garagnani, Sarika Jalan, Claudio Franceschi, Mikhail Ivanchenko, Cristina Giuliani
Software Mentions: 3
Published: almost 6 years ago
10.1038/s42003-020-01143-5
Host-parasite tissue adhesion by a secreted type of β-1,4-glucanase in the parasitic plant Phtheirospermum japonicum
Cited by: 26
Author(s): Ken-ichi Kurotani, Takanori Wakatake, Yasunori Ichihashi, Koji Okayasu, Yu Sawai, Satoshi Ogawa, Songkui Cui, Takamasa Suzuki, Ken Shirasu, Michitaka Notaguchi
Software Mentions: 3
Published: about 6 years ago
10.1186/s12920-019-0613-5
Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cells
Cited by: 19
Author(s): Yen Jung Chiu, Yi Hsuan Hsieh, Yen Hua Huang
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0249423
Predicting student satisfaction of emergency remote learning in higher education during COVID-19 using machine learning techniques
Cited by: 52
Author(s): Indy Man Kit Ho, K.Y. Cheong, Anthony Weldon
Software Mentions: 3
Published: over 5 years ago
10.3390/metabo10100416
A Python-Based Pipeline for Preprocessing LC–MS Data for Untargeted Metabolomics Workflows
Cited by: 22
Author(s): Gabriel Riquelme, Nicolás Zabalegui, Pablo Marchi, Christina M. Jones, Marı́a Eugenia Monge
Software Mentions: 3
Published: almost 6 years ago
10.3390/metabo11010013
SeMPI 2.0—A Web Server for PKS and NRPS Predictions Combined with Metabolite Screening in Natural Product Databases
Cited by: 14
Author(s): Paul Zierep, Adriana Teresa Ceci, Ilia Dobrusin, Sinclair C Rockwell-Kollmann, Stefan Günther
Software Mentions: 3
Published: almost 6 years ago
10.3389/fonc.2019.00821
CT-Based Radiomics Signature for the Preoperative Discrimination Between Head and Neck Squamous Cell Carcinoma Grades
Cited by: 36
Author(s): Wenli Wu, Junyong Ye, Qi Wang, Jin Luo, Shengsheng Xu
Software Mentions: 3
Published: about 7 years ago
10.1523/ENEURO.0305-18.2020
Circuit and Cellular Mechanisms Facilitate the Transformation from Dense to Sparse Coding in the Insect Olfactory System
Cited by: 16
Author(s): Rinaldo Betkiewicz, Benjamin Lindner, Martin Paul Nawrot
Software Mentions: 3
Published: over 6 years ago
10.3390/metabo10100393
BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and Classification
Cited by: 5
Author(s): Peter Weber, Josch Pauling, Markus List, Jan Baumbach
Software Mentions: 3
Published: about 6 years ago
10.3389/fonc.2020.00592
A Computed Tomography-Based Radiomics Nomogram to Preoperatively Predict Tumor Necrosis in Patients With Clear Cell Renal Cell Carcinoma
Cited by: 3
Author(s): Yi Jiang, Wuchao Li, Chencui Huang, Chong Tian, Qi Chen, Xian‐Chun Zeng, Yin Chen, Yi Chen, Yintong Yang, Heng Liu, Yonghua Bo, Chenggong Luo, Yiming Li, Tijiang Zhang, Rongping Wang
Software Mentions: 3
Published: over 6 years ago
10.3389/fonc.2021.661244
DeepCUBIT: Predicting Lymphovascular Invasion or Pathological Lymph Node Involvement of Clinical T1 Stage Non-Small Cell Lung Cancer on Chest CT Scan Using Deep Cubical Nodule Transfer Learning Algorithm
Cited by: 5
Author(s): Kyongmin Sarah Beck, Bomi Gil, Sae Jung Na, Ji Hyung Hong, Sang Hoon Chun, Ho Jung An, Jae Jun Kim, Soon Auck Hong, Bora Lee, Won Sang Shim, Sung Soo Park, Yoon Ho Ko
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2018.00035
Design and Selection of Machine Learning Methods Using Radiomics and Dosiomics for Normal Tissue Complication Probability Modeling of Xerostomia
Cited by: 96
Author(s): Hubert S. Gabryś, Florian Buettner, Florian Sterzing, Henrik Hauswald, Mark Bangert
Software Mentions: 3
Published: over 8 years ago
10.3389/fonc.2021.621278
Subgroup-Independent Mapping of Renal Cell Carcinoma—Machine Learning Reveals Prognostic Mitochondrial Gene Signature Beyond Histopathologic Boundaries
Cited by: 30
Author(s): André Marquardt, Antonio Giovanni Solimando, Alexander Kerscher, Max Bittrich, Charis Kalogirou, Hubert Kübler, Andreas Rosenwald, Ralf C. Bargou, Philip Kollmannsberger, Bastian Schilling, Svenja Meierjohann, Markus Krebs
Software Mentions: 3
Published: over 5 years ago
10.1128/JVI.03614-14
Genome Diversity of Epstein-Barr Virus from Multiple Tumor Types and Normal Infection
Cited by: 193
Author(s): Anne L. Palser, Nicholas Grayson, Rob White, Craig Corton, Samantha Correia, Mohammed Ba Abdullah, Simon J. Watson, Matthew Cotten, John R. Arrand, Paul G. Murray, Martin J. Allday, Alan B. Rickinson, Young Lw, Paul J. Farrell, Paul Kellam
Software Mentions: 3
Published: over 11 years ago
10.1186/s12859-019-2892-4
MHCSeqNet: a deep neural network model for universal MHC binding prediction
Cited by: 48
Author(s): Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich
Software Mentions: 3
Published: over 7 years ago
10.1128/JVI.01413-17
The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation
Cited by: 41
Author(s): S. Moquin, Sean Thomas, Sean Whalen, Alix Warburton, Samantha G. Fernandez, Alison A. McBride, Katherine S. Pollard, JJ L. Miranda
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0196615
An automated, high-throughput plant phenotyping system using machine learning-based plant segmentation and image analysis
Cited by: 73
Author(s): Unseok Lee, Sungyul Chang, Gian Anantrio Putra, Hyoungseok Kim, Dong Hwan Kim
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0195798
Automatic lesion detection and segmentation of 18F-FET PET in gliomas: A full 3D U-Net convolutional neural network study
Cited by: 105
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Niklaus Schaefer, Emmanuel Itti, John O. Prior
Software Mentions: 3
Published: over 8 years ago
10.1021/acs.jpcb.1c01281
Membrane Interactions of α-Synuclein Revealed by Multiscale Molecular Dynamics Simulations, Markov State Models, and NMR
Cited by: 13
Author(s): Sarah-Beth T. A. Amos, Thomas C. Schwarz, Jiye Shi, Benjamin P. Cossins, Terry Baker, Richard J. K. Taylor, Robert Konrat, Mark S. P. Sansom
Software Mentions: 3
Published: over 5 years ago
10.2196/26892
Constructing High-Fidelity Phenotype Knowledge Graphs for Infectious Diseases With a Fine-Grained Semantic Information Model: Development and Usability Study
Cited by: 6
Author(s): Lizong Deng, Luming Chen, Tao Yang, Mi Liu, Shicheng Li, Taijiao Jiang
Software Mentions: 3
Published: over 5 years ago
10.2196/11990
Detecting Hypoglycemia Incidents Reported in Patients’ Secure Messages: Using Cost-Sensitive Learning and Oversampling to Reduce Data Imbalance
Cited by: 24
Author(s): Jinying Chen, John P. Lalor, Weisong Liu, Emily Druhl, Edgard A. Granillo, Varsha G Vimalananda, Hong Yu
Software Mentions: 3
Published: over 7 years ago
10.3390/ma14040713
On the Use of Machine Learning Models for Prediction of Compressive Strength of Concrete: Influence of Dimensionality Reduction on the Model Performance
Cited by: 34
Author(s): Zhi Wan, Yading Xu, Branko Šavija
Software Mentions: 3
Published: over 5 years ago
10.3389/fneur.2020.578571
Cognitive Processing Impacts High Frequency Intracranial EEG Activity of Human Hippocampus in Patients With Pharmacoresistant Focal Epilepsy
Cited by: 5
Author(s): Jan Cimbálník, Martin Pail, Petr Klimeš, Vojtech Travnicek, Róbert Román, Adam Vajčner, Milan Brázdil
Software Mentions: 3
Published: almost 6 years ago
10.2196/19263
Efficiency of Computer-Aided Facial Phenotyping (DeepGestalt) in Individuals With and Without a Genetic Syndrome: Diagnostic Accuracy Study
Cited by: 19
Author(s): Jean Tori Pantel, Nurulhuda Hajjir, Magdalena Danyel, Jonas Elsner, Angela Teresa Abad-Perez, Peter C. Hansen, Stefan Mundlos, Malte Spielmann, Denise Horn, Claus‐Eric Ott, Martin A. Mensah
Software Mentions: 3
Published: almost 6 years ago
10.3389/fninf.2016.00049
Pyrcca: Regularized Kernel Canonical Correlation Analysis in Python and Its Applications to Neuroimaging
Cited by: 54
Author(s): Natalia Y. Bilenko, Jack L. Gallant
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0253023
Replication of machine learning methods to predict treatment outcome with antidepressant medications in patients with major depressive disorder from STAR*D and CAN-BIND-1
Cited by: 2
Author(s): John-Jose Nunez, Teyden T. Nguyen, Yihan Zhou, Bo Cao, Raymond T. Ng, Jun Chen, Benício N. Frey, Roumen Milev, Daniel J. Müller, Susan Rotzinger, Cláudio N. Soares, Rudolf Uher, Sidney H. Kennedy, Raymond W. Lam
Software Mentions: 3
Published: over 5 years ago
10.2196/22635
Natural Language Processing Reveals Vulnerable Mental Health Support Groups and Heightened Health Anxiety on Reddit During COVID-19: Observational Study
Cited by: 174
Author(s): Daniel M. Low, Laurie Rumker, Tanya Talkar, John Torous, Guillermo A. Cecchi, Samik Ghosh
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0256152
Radiomics machine learning study with a small sample size: Single random training-test set split may lead to unreliable results
Cited by: 26
Author(s): Chansik An, Yae Won Park, Sung Soo Ahn, Kyunghwa Han, Hwiyoung Kim, Seung Koo Lee
Software Mentions: 3
Published: about 5 years ago
10.3390/ma13102317
Feature Importance of Stabilised Rammed Earth Components Affecting the Compressive Strength Calculated with Explainable Artificial Intelligence Tools
Cited by: 27
Author(s): Hubert Anysz, Łukasz Brzozowski, Wojciech Kretowicz, Piotr Narloch
Software Mentions: 3
Published: over 6 years ago
10.3389/fnbot.2018.00086
DeepDynamicHand: A Deep Neural Architecture for Labeling Hand Manipulation Strategies in Video Sources Exploiting Temporal Information
Cited by: 3
Author(s): Visar Arapi, Cosimo Della Santina, Davide Bacciu, Matteo Bianchi, Antonio Bicchi
Software Mentions: 3
Published: almost 8 years ago
10.2196/26139
Use of Multiprognostic Index Domain Scores, Clinical Data, and Machine Learning to Improve 12-Month Mortality Risk Prediction in Older Hospitalized Patients: Prospective Cohort Study
Cited by: 9
Author(s): Richard Woodman, Kimberley Bryant, Michael J. Sorich, Alberto Pilotto, Arduino A. Mangoni
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0167822
On the Reconstruction of Text Phylogeny Trees: Evaluation and Analysis of Textual Relationships
Cited by: 7
Author(s): Guilherme D. Marmerola, Marina Atsumi Oikawa, Zanoni Dias, Siome Goldenstein, Anderson Rocha
Software Mentions: 3
Published: almost 10 years ago
10.2196/17087
Investigation of Geographic and Macrolevel Variations in LGBTQ Patient Experiences: Longitudinal Social Media Analysis
Cited by: 8
Author(s): Yulin Hswen, Amanda Zhang, Kara Sewalk, Gaurav Tuli, John S. Brownstein, Joseph E. Hawkins
Software Mentions: 3
Published: about 6 years ago
10.2196/12783
Tweet Classification Toward Twitter-Based Disease Surveillance: New Data, Methods, and Evaluations
Cited by: 23
Author(s): Shoko Wakamiya, Mizuki Morita, Yoshinobu Kano, Tomoko Ohkuma, Eiji Aramaki
Software Mentions: 3
Published: over 7 years ago
10.2196/20645
Marrying Medical Domain Knowledge With Deep Learning on Electronic Health Records: A Deep Visual Analytics Approach
Cited by: 15
Author(s): Rui Li, Changchang Yin, Samuel Yang, Buyue Qian, Ping Zhang
Software Mentions: 3
Published: about 6 years ago
10.2196/26075
Predictability of COVID-19 Hospitalizations, Intensive Care Unit Admissions, and Respiratory Assistance in Portugal: Longitudinal Cohort Study
Cited by: 10
Author(s): André Patrício, Rafael S. Costa, Rui Henriques
Software Mentions: 3
Published: over 5 years ago
10.2196/27060
Prediction and Feature Importance Analysis for Severity of COVID-19 in South Korea Using Artificial Intelligence: Model Development and Validation
Cited by: 25
Author(s): Ho Young Chung, Hoon Ko, Wu Seong Kang, Kyung Won Kim, Hooseok Lee, Chul Park, Hyun-Ok Song, Tae–Young Choi, Jae Ho Seo, Jin-Seok Lee
Software Mentions: 3
Published: over 5 years ago
10.2196/30251
Leveraging Transfer Learning to Analyze Opinions, Attitudes, and Behavioral Intentions Toward COVID-19 Vaccines: Social Media Content and Temporal Analysis
Cited by: 20
Author(s): Siru Liu, Jili Li, Jialin Liu
Software Mentions: 3
Published: about 5 years ago
10.1007/s10994-017-5685-x
Meta-QSAR: a large-scale application of meta-learning to drug design and discovery
Cited by: 58
Author(s): Iván Olier, Noureddin Sadawi, G. Richard J. Bickerton, Joaquin Vanschoren, Crina Groşan, Larisa Soldatova, Ross D. King
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0245026
Estimating pulse wave velocity from the radial pressure wave using machine learning algorithms
Cited by: 17
Author(s): Wen Jin, Philip Chowienczyk, Jordi Alastruey
Software Mentions: 3
Published: over 5 years ago
10.3389/fncir.2020.00042
Automated Curation of CNMF-E-Extracted ROI Spatial Footprints and Calcium Traces Using Open-Source AutoML Tools
Cited by: 9
Author(s): Lina M. Tran, Andrew J. Mocle, Adam I. Ramsaran, Alexander D. Jacob, Paul W. Frankland, Sheena A. Josselyn
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2020.00383
Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease
Cited by: 48
Author(s): Zhangran Chen, Yurou Xie, Fei Zhou, Bangzhou Zhang, Jingtong Wu, Luxi Yang, Shuaimei Xu, Robert D. Stedtfeld, Qiongyun Chen, Jingjing Liu, Xiang Zhang, Hui Xu, Jianlin Ren
Software Mentions: 3
Published: over 6 years ago
10.1186/s12859-019-2900-8
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
Cited by: 10
Author(s): Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2021.644487
Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences
Cited by: 8
Author(s): Michał Ziemski, Treepop Wisanwanichthan, Nicholas A. Bokulich, Benjamin Kaehler
Software Mentions: 3
Published: over 5 years ago
10.1038/s41374-021-00612-7
A new technological approach in diagnostic pathology: mass spectrometry imaging-based metabolomics for biomarker detection in urachal cancer
Cited by: 10
Author(s): Judith Martha Neumann, Karsten Niehaus, Nils Neumann, Hans Christoph Knobloch, Felix Bremmer, Ulrich Krafft, Udo Kellner, Péter Nyírády, Tibor Szarvas, Hanna Bednarz, Henning Reis
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2021.689987
Diversity and Eco-Evolutionary Associations of Endosymbiotic Astome Ciliates With Their Lumbricid Earthworm Hosts
Cited by: 9
Author(s): Tomáš Obert, Ivan Rurik, Peter Vďačný
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2020.564579
Differential Gut Microbiota and Fecal Metabolites Related With the Clinical Subtypes of Myasthenia Gravis
Cited by: 17
Author(s): Xunmin Tan, Yu Huang, Tingjia Chai, Xiaoli Zhao, Yifan Li, Jing Wu, Hanping Zhang, Jiajia Duan, Weiwei Liang, Bangmin Yin, Ke Cheng, Gang Yu, Peng Zheng, Peng Xie
Software Mentions: 3
Published: about 6 years ago
10.3390/ijms21176036
Transcriptomic Analysis of Short-Term Salt Stress Response in Watermelon Seedlings
Cited by: 21
Author(s): Qiushuo Song, M. S. Joshi, Vijay Joshi
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0113516
Breaking an Epigenetic Chromatin Switch: Curious Features of Hysteresis in Saccharomyces cerevisiae Telomeric Silencing
Cited by: 8
Author(s): Vijayalakshmi H. Nagaraj, Swagatam Mukhopadhyay, Adel Dayarian, Anirvan M. Sengupta
Software Mentions: 3
Published: almost 12 years ago
10.1177/1176935120965542
Robust Distance Measures for <i>k</i>NN Classification of Cancer Data
Cited by: 27
Author(s): Rezvan Ehsani, Finn Drabløs
Software Mentions: 3
Published: almost 7 years ago
10.3389/fmicb.2020.616692
Tracking Major Sources of Water Contamination Using Machine Learning
Cited by: 7
Author(s): Jianyong Wu, Conghe Song, Eric A. Dubinsky, J R Stewart
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.57390
Population-scale proteome variation in human induced pluripotent stem cells
Cited by: 38
Author(s): Bogdan Mirauta, Daniel D Seaton, Dalila Bensaddek, Alejandro Brenes, Marc Jan Bonder, Helena Kilpinen, Chukwuma A. Agu, Alex Alderton, Petr Danecek, Rachel Denton, Richard Durbin, Daniel J Gaffney, Ângela Gonçalves, Reena Halai, Sarah Harper, Christopher M. Kirton, Anja Kolb-Kokocinski, Andreas Leha, Shane McCarthy, Yasin Memari, Minal Patel, Ewan Birney, Francesco Paolo Casale, Laura Clarke, Peter W. Harrison, Helena Kilpinen, Ian Streeter, Davide Denovi, Oliver Stegle, Angus I. Lamond, Ruta Meleckyte, Natalie Moens, Fiona M. Watt, Willem H. Ouwehand, Philip L. Beales, Oliver Stegle, Angus I. Lamond
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.56053
Population coupling predicts the plasticity of stimulus responses in cortical circuits
Cited by: 24
Author(s): Yann Sweeney, Claudia Clopath
Software Mentions: 3
Published: over 6 years ago
10.1007/s00280-019-03797-3
A novel method to address the association between received dose intensity and survival outcome: benefits of approaching treatment intensification at a more individualised level in a trial of the European Osteosarcoma Intergroup
Cited by: 18
Author(s): Carlo Lancia, Jakob Anninga, Matthew R. Sydes, Cristian Spitoni, Jeremy S Whelan, Pancras C.W. Hogendoorn, Hans Gelderblom, Marta Fiocco
Software Mentions: 3
Published: over 7 years ago
10.1186/s12864-018-4665-2
Prediction of plant lncRNA by ensemble machine learning classifiers
Cited by: 48
Author(s): Caitlin M. A. Simopoulos, Elizabeth A. Weretilnyk, G. Brian Golding
Software Mentions: 3
Published: over 8 years ago
10.3389/fimmu.2021.715072
Artificial Intelligence Predicts Severity of COVID-19 Based on Correlation of Exaggerated Monocyte Activation, Excessive Organ Damage and Hyperinflammatory Syndrome: A Prospective Clinical Study
Cited by: 11
Author(s): Olga Krysko, Elena Kondakova, O. S. Vershinina, Elena A. Galova, А С Благонравова, Е. Н. Горшкова, Claus Bachert, Mikhail Ivanchenko, Dmitri V. Krysko, Maria V. Vedunova
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.08719
Molecular architecture of the yeast Mediator complex
Cited by: 133
Author(s): Philip J. Robinson, Michael J. Trnka, Riccardo Pellarin, Charles H. Greenberg, David Bushnell, Roger T. Davis, Alma L. Burlingame, Andrej Šali, Roger D. Kornberg
Software Mentions: 3
Published: about 11 years ago
10.1089/crispr.2020.0022
Deconvolution of Complex DNA Repair (DECODR): Establishing a Novel Deconvolution Algorithm for Comprehensive Analysis of CRISPR-Edited Sanger Sequencing Data
Cited by: 39
Author(s): Kevin Bloh, Rohan Kanchana, Pawel Bialk, Kelly Banas, Zugui Zhang, Byung-Chun Yoo, Eric B. Kmiec
Software Mentions: 3
Published: over 5 years ago
10.3389/fnhum.2021.621493
MindLink-Eumpy: An Open-Source Python Toolbox for Multimodal Emotion Recognition
Cited by: 13
Author(s): Ruixin Li, Yan Liang, Xiaojian Liu, Bingbing Wang, Wenxin Huang, Zhanchuan Cai, Yaoguang Ye, Lina Qiu, Jiahui Pan
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0209139
Computational framework for targeted high-coverage sequencing based NIPT
Cited by: 7
Author(s): Hindrek Teder, Priit Paluoja, Kadri Rekker, Andres Salumets, Kaarel Krjutškov, Priit Palta
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0237304
A fractal kinetics SI model can explain the dynamics of COVID-19 epidemics
Cited by: 13
Author(s): Kosmas Kosmidis, Panos Macheras
Software Mentions: 3
Published: about 6 years ago
10.3389/fnins.2021.691244
MRI Radiomic Signature of White Matter Hyperintensities Is Associated With Clinical Phenotypes
Cited by: 9
Author(s): Martin Bretzner, Anna K. Bonkhoff, Markus D. Schirmer, Sungmin Hong, Adrian V. Dalca, Kathleen Donahue, Anne‐Katrin Giese, Mark R. Etherton, Pamela M. Rist, Marco Nardin, Rǎzvan V. Marinescu, Clinton Wang, Robert W Regenhardt, Xavier Leclerc, Renaud Lopes, Oscar Benavente, John W. Cole, Amanda Donatti, Christoph J. Griessenauer, Laura Heitsch, Lukas Holmegaard, Katarina Jood, Jordi Jiménez‐Conde, Steven J. Kittner, Robin Lemmens, Christopher Levi, Patrick F. McArdle, Caitrin W. McDonough, James F. Meschia, Chia‐Ling Phuah, Arndt Rolfs, Stefan Ropele, Jonathan Rosand, Jaume Roquer, Tatjana Rundek, Ralph L. Sacco, Reinhold Schmidt, Pankaj Sharma, Agnieszka Słowik, Alessandro Sousa, Tara M. Stanne, Daniel Strbian, Turgut Tatlısumak, Vincent Thijs, Achala Vagal, Johan Wassélius, Daniel Woo, Ona Wu, Ramin Zand, Bradford B. Worrall, Jane Maguire, Arne Lindgren, Christina Jern, Polina Golland, Grégory Kuchcinski, Natalia S. Rost
Software Mentions: 3
Published: about 5 years ago
10.3390/ijms22137124
Single Copy Oligonucleotide Fluorescence In Situ Hybridization Probe Design Platforms: Development, Application and Evaluation
Cited by: 9
Author(s): Guanqing Liu, Tao Zhang
Software Mentions: 3
Published: over 5 years ago
10.1107/S1399004715000383
<i>Brickworx</i>builds recurrent RNA and DNA structural motifs into medium- and low-resolution electron-density maps
Cited by: 8
Author(s): Grzegorz Chojnowski, Tomasz Waleń, Paweł Piątkowski, Wojciech Potrzebowski, Janusz M. Bujnicki
Software Mentions: 3
Published: over 11 years ago
10.3390/brainsci10120921
Mindfulness, Interoception, and Olfaction: A Network Approach
Cited by: 8
Author(s): Barbara Lefranc, Charles Martin‐Krumm, Charlotte Aufauvre-Poupon, Benoit Berthail, Marion Trousselard
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0202214
Predictive pollen-based biome modeling using machine learning
Cited by: 11
Author(s): Magdalena K. Sobol, Sarah A. Finkelstein
Software Mentions: 3
Published: about 8 years ago
10.3389/fgene.2021.641100
Unearthing of Key Genes Driving the Pathogenesis of Alzheimer’s Disease via Bioinformatics
Cited by: 5
Author(s): Xingxing Zhao, Hongmei Yao, Xinyi Li
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0166162
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Cited by: 13
Author(s): James B. Pettengill, Arthur W. Pightling, Joseph D. Baugher, Hugh Rand, Errol Strain
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0247444
Attention based GRU-LSTM for software defect prediction
Cited by: 12
Author(s): Hafiz Shahbaz Munir, Shengbing Ren, Mubashar Mustafa, Chaudry Naeem Siddique, Shazib Qayyum
Software Mentions: 3
Published: over 5 years ago
10.1128/mSystems.00022-16
Geography and Location Are the Primary Drivers of Office Microbiome Composition
Cited by: 104
Author(s): John Chase, Jennifer Fouquier, Mahnaz Zare, Derek L. Sonderegger, Rob Knight, Scott T. Kelley, Jeffrey A. Siegel, J. Gregory Caporaso
Software Mentions: 3
Published: over 10 years ago
10.3389/fgene.2020.598318
Applications of Support Vector Machine in Genomic Prediction in Pig and Maize Populations
Cited by: 17
Author(s): Wei Zhao, Xueshuang Lai, Dengying Liu, Zhenyang Zhang, Peipei Ma, Qishan Wang, Zhe Zhang, Yuchun Pan
Software Mentions: 3
Published: almost 6 years ago
10.1128/mSystems.00101-16
From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer
Cited by: 90
Author(s): Aaron Weimann, Kyra Mooren, Jeremy A. Frank, Phillip B. Pope, Andreas Bremges, Alice C. McHardy
Software Mentions: 3
Published: almost 10 years ago
10.1128/mSphere.00482-19
Genomic Variation among Strains of <i>Crithidia bombi</i> and <i>C. expoeki</i>
Cited by: 7
Author(s): Evgeny S. Gerasimov, Niklaus Zemp, Regula Schmid‐Hempel, Paul Schmid‐Hempel, Vyacheslav Yurchenko
Software Mentions: 3
Published: almost 7 years ago
10.1007/s41109-018-0087-y
An illustrated approach to Soft Textual Cartography
Cited by: 1
Author(s): Raphaël Ceré, Mattia Egloff
Software Mentions: 3
Published: about 8 years ago
10.1128/mSystems.00188-16
Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses
Cited by: 35
Author(s): Holly H. Ganz, Ladan Doroud, Alana Firl, Sarah M. Hird, Jonathan A. Eisen, Walter M. Boyce
Software Mentions: 3
Published: over 9 years ago
10.7150/thno.37429
Association of MRI-derived radiomic biomarker with disease-free survival in patients with early-stage cervical cancer
Cited by: 50
Author(s): Fang Jin, Bin Zhang, Shuo Wang, Yan Jin, Fei Wang, Yingying Ding, Justin Chen, Liting Chen, Yueyue Li, Minmin Li, Zhuozhi Chen, Lizhi Liu, Zhenyu Liu, Jie Tian, Shuixing Zhang
Software Mentions: 3
Published: almost 7 years ago
10.1007/s12064-020-00330-6
Are spliced ncRNA host genes distinct classes of lncRNAs?
Cited by: 1
Author(s): Riturparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter F. Stadler
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12859-021-04348-5
DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction
Cited by: 2
Author(s): Jimena Solana, Emilio Garrote-Sánchez, Rosario Gil
Software Mentions: 3
Published: about 5 years ago
10.1038/s41398-019-0595-2
Depression and suicide risk prediction models using blood-derived multi-omics data
Cited by: 32
Author(s): Youngjune Bhak, Hyoung oh Jeong, Yun Sung Cho, Sungwon Jeon, Juok Cho, Jeong An Gim, Yeonsu Jeon, Asta Blažytė, Seung Gu Park, Hak Min Kim, Eun Seok Shin, Jong Woo Paik, Hae Woo Lee, Wooyoung Kang, Aram Kim, Yumi Kim, Byung Chul Kim, Byung Joo Ham, Jong Bhak, Semin Lee
Software Mentions: 3
Published: almost 7 years ago
10.1128/mSystems.00046-17
Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling
Cited by: 179
Author(s): Eva d’Hennezel, Sahar Abubucker, Leon O. Murphy, Thomas W. Cullen
Software Mentions: 3
Published: almost 9 years ago
10.3390/s21144713
Physical Activity Recognition Based on a Parallel Approach for an Ensemble of Machine Learning and Deep Learning Classifiers
Cited by: 5
Author(s): Mariem Abid, Amal Khabou, Youssef Ouakrim, Hugo Watel, Safouene Chemcki, Amar Mitiche, Amel Benazza-Benyahia, Neila Mezghani
Software Mentions: 3
Published: over 5 years ago
10.3390/s21134302
The Promise of Sleep: A Multi-Sensor Approach for Accurate Sleep Stage Detection Using the Oura Ring
Cited by: 57
Author(s): Marco Altini, Hannu Kinnunen
Software Mentions: 3
Published: over 5 years ago
10.3390/s21155218
LPWAN and Embedded Machine Learning as Enablers for the Next Generation of Wearable Devices
Cited by: 14
Author(s): Ramón Sánchez-Iborra
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0201264
Effective injury forecasting in soccer with GPS training data and machine learning
Cited by: 142
Author(s): Alessio Rossi, Luca Pappalardo, Paolo Cintia, F. Marcello Iaia, Javier Fernández, Daniel Medina
Software Mentions: 3
Published: about 8 years ago
10.1371/journal.pone.0256858
A general method for estimating the prevalence of influenza-like-symptoms with Wikipedia data
Cited by: 3
Author(s): Giovanni De Toni, Cristian Consonni, Alberto Montresor
Software Mentions: 3
Published: about 5 years ago
10.3390/bios9010029
Differentiation of Patients with Balance Insufficiency (Vestibular Hypofunction) versus Normal Subjects Using a Low-Cost Small Wireless Wearable Gait Sensor
Cited by: 9
Author(s): Tam Nguyên, Jonathan H. Young, Amanda Rodriguez, Steven Zupancic, Donald Y. C. Lie
Software Mentions: 3
Published: over 7 years ago
10.3390/s21082873
HRV Features as Viable Physiological Markers for Stress Detection Using Wearable Devices
Cited by: 52
Author(s): Kayisan M. Dalmeida, G. L. Masala
Software Mentions: 3
Published: over 5 years ago
10.3390/s21093256
Autonomous Fingerprinting and Large Experimental Data Set for Visible Light Positioning
Cited by: 6
Author(s): Tyrel Glass, Fakhrul Alam, Mathew Legg, Frazer Noble
Software Mentions: 3
Published: over 5 years ago
10.3390/s21020405
DOLARS, a Distributed On-Line Activity Recognition System by Means of Heterogeneous Sensors in Real-Life Deployments—A Case Study in the Smart Lab of The University of Almería
Cited by: 10
Author(s): Marcos Lupión, Javier Medina-Quero, Juan F. Sanjuan, Pilar M. Ortigosa
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12885-021-08276-8
Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer
Cited by: 6
Author(s): Yichao Li, Sushila Jaiswal, Rupleen Kaur, Dana Alsaadi, Xiaoyu Liang, Frank A. Drews, Julie A. DeLoia, Thomas C. Krivak, Hanna M. Petrykowska, Valer Gotea, Lonnie R. Welch, Laura Elnitski
Software Mentions: 3
Published: over 5 years ago
10.3390/s21113867
Climate-Aware and IoT-Enabled Selection of the Most Suitable Stone Fruit Tree Variety
Cited by: 6
Author(s): Juan Antonio López-Morales, Juan Antonio Martı́nez, Manuel Caro, Manuel Erena, Antonio F. Skarmeta
Software Mentions: 3
Published: over 5 years ago
10.3390/s21175896
Enhanced Changeover Detection in Industry 4.0 Environments with Machine Learning
Cited by: 4
Author(s): Eddi Miller, Vladyslav Borysenko, Moritz Heusinger, Niklas Niedner, Bastian Engelmann, Jan Schmitt
Software Mentions: 3
Published: about 5 years ago
10.3389/fcell.2020.594587
DeepCSO: A Deep-Learning Network Approach to Predicting Cysteine S-Sulphenylation Sites
Cited by: 16
Author(s): Xiaru Lyu, Shuhao Li, Chunyang Jiang, Ningning He, Zhe Chen, Yang Zou, Lei Li
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pntd.0008275
Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting
Cited by: 32
Author(s): Alexandra Grote, Yichao Li, Canhui Liu, Denis Voronin, Adam Geber, Sara Lustigman, Thomas R. Unnasch, Elodie Ghedin
Software Mentions: 3
Published: over 6 years ago
10.3389/fcell.2020.00350
Localization Preference of Antimicrobial Peptides on Liquid-Disordered Membrane Domains
Cited by: 26
Author(s): Juanjuan Su, Siewert J. Marrink, Manuel N. Melo
Software Mentions: 3
Published: over 6 years ago