pypi: scikit-learn | Projects | Ecosyste.ms: Papers

10.1371/journal.pbio.3001306

Dynamic landscape of protein occupancy across the Escherichia coli chromosome
Cited by: 18
Author(s): Peter L. Freddolino, Haley M. Amemiya, Thomas J. Goss, Saeed Tavazoie
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.01182

Graph Embedding Deep Learning Guides Microbial Biomarkers' Identification
Cited by: 19
Author(s): Qiang Zhu, Xingpeng Jiang, Qing Zhu, Min Pan, Tingting He
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-019-2680-1

Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics
Cited by: 19
Author(s): Héléna A. Gaspar, Gerome Breen
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00960-20

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fncom.2020.580632

DNNBrain: A Unifying Toolbox for Mapping Deep Neural Networks and Brains
Cited by: 11
Author(s): Xiayu Chen, Ming Zhou, Zhengxin Gong, Wei Xu, Xingyu Liu, Taicheng Huang, Zonglei Zhen, Jia Liu
Software Mentions: 4
Published: almost 4 years ago

10.1186/1752-0509-7-S6-S16

Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data
Cited by: 14
Author(s): Agnieszka Podsiadło, Mariusz Wrzesień, Wiesław Paja, Witold R. Rudnicki, Bartek Wilczyński
Software Mentions: 4
Published: almost 11 years ago

10.1128/mSystems.00211-19

Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning
Cited by: 16
Author(s): Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko
Software Mentions: 4
Published: about 5 years ago

10.34133/2020/5839856

“Macrobot”: An Automated Segmentation-Based System for Powdery Mildew Disease Quantification
Cited by: 15
Author(s): Stefanie Lück, Marc Strickert, Maximilian Lorbeer, Friedrich Melchert, Andreas Backhaus, David Kilias, Udo Seiffert, Dimitar Douchkov
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1009014

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Cited by: 8
Author(s): Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks
Software Mentions: 4
Published: over 3 years ago

10.3389/fncom.2018.00056

Modern Machine Learning as a Benchmark for Fitting Neural Responses
Cited by: 52
Author(s): Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Raeed H. Chowdhury, Lee E. Miller, Konrad Kording
Software Mentions: 4
Published: over 6 years ago

10.7150/thno.55676

A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pmed.1002683

Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study
Cited by: 809
Author(s): John R. Zech, Marcus A. Badgeley, Manway Liu, Anthony Costa, J. Titano, Eric K. Oermann
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008347

Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008001

Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites
Cited by: 2
Author(s): Ethan D. Evans, Dai Cl, Siavash Isazadeh, Shinkyu Park, Carlo Ratti, Eric J. Alm
Software Mentions: 4
Published: over 4 years ago

10.1186/s12870-021-03070-x

Natural variation in wild tomato trichomes; selecting metabolites that contribute to insect resistance using a random forest approach
Cited by: 13
Author(s): Ruy Kortbeek, Marc Galland, Aleksandra Muras, Frans van der Kloet, Bart André, Maurice Heilijgers, Sacha A. F. T. van Hijum, Michel A. Haring, Robert C. Schuurink, Petra Bleeker
Software Mentions: 4
Published: over 3 years ago

10.3390/s21186020

Biometric Identification Based on Eye Movement Dynamic Features
Cited by: 3
Author(s): Katarzyna Harężlak, Michal Blasiak, Paweł Kasprowski
Software Mentions: 4
Published: about 3 years ago

10.1186/s12870-014-0276-5

Populus tremula (European aspen) shows no evidence of sexual dimorphism
Cited by: 46
Author(s): Kathryn M. Robinson, Nicolas Delhomme, Niklas Mähler, Bastian Schiffthaler, Jenny Önskog, Benedicte Riber Albrectsen, Pär K. Ingvarsson, Torgeir R. Hvidsten, Stefan Jansson, Nathaniel R. Street
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008914

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Cited by: 29
Author(s): Laetitia Hebert, Tosif Ahamed, Á. S. Costa, Liam O’Shaughnessy, Greg J. Stephens
Software Mentions: 4
Published: over 3 years ago

10.3389/fncel.2021.668230

Impaired Adaptation and Laminar Processing of the Oddball Paradigm in the Primary Visual Cortex of Fmr1 KO Mouse
Cited by: 4
Author(s): Alexandr Pak, Samuel T. Kissinger, Alexander A. Chubykin
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-24318-x

EEG Analytics for Early Detection of Autism Spectrum Disorder: A data-driven approach
Cited by: 206
Author(s): William J. Bosl, Helen Tager‐Flusberg, Charles A. Nelson
Software Mentions: 4
Published: over 6 years ago

10.1093/scan/nsaa141

HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis
Cited by: 38
Author(s): Anaël Ayrolles, Florence Brun, Yi‐Ping Phoebe Chen, Amir Djalovski, Yann Beauxis, Richard Delorme, Thomas Bourgeron, Suzanne Dikker, Guillaume Dumas
Software Mentions: 4
Published: about 4 years ago

10.1016/j.cels.2019.11.006

Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning
Cited by: 44
Author(s): Gregory L. Medlock, Jason A. Papin
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-020-02021-3

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
Cited by: 40
Author(s): Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-020-02138-5

Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging
Cited by: 40
Author(s): Scott A. Lujan, Matthew J. Longley, Margaret H. Humble, Christopher A. Lavender, Adam Burkholder, Emma L. Blakely, Charlotte L. Alston, Gráinne Gorman, D.M. Turnbull, Robert McFarland, Robert W. Taylor, Thomas A. Kunkel, William C. Copeland
Software Mentions: 4
Published: about 4 years ago

10.1186/s13059-021-02485-x

Mapping the evolving landscape of super-enhancers during cell differentiation
Cited by: 16
Author(s): Yan Kai, Bin E. Li, Min Zhu, Grace Y Li, Fei Chen, Yingli Han, Hye Young Ji, Stuart H. Orkin, Wenqing Cai, Jialiang Huang, Guo‐Cheng Yuan
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0224521

On the development of sleep states in the first weeks of life
Cited by: 13
Author(s): Tomasz Wielek, Renata Del Giudice, Adelheid Lang, Małgorzata Wisłowska, Peter Ott, Manuel Schabus
Software Mentions: 4
Published: about 5 years ago

10.1186/s13073-021-00835-9

CADD-Splice—improving genome-wide variant effect prediction using deep learning-derived splice scores
Cited by: 294
Author(s): Philipp Rentzsch, Max Schubach, Jay Shendure, Martin Kircher
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0246165

Machine learning of EEG spectra classifies unconsciousness during GABAergic anesthesia
Cited by: 10
Author(s): John H. Abel, Marcus A. Badgeley, Benyamin Meschede-Krasa, Gabriel Schamberg, Indie C. Garwood, Kimaya Lecamwasam, S. Chakravarty, David Zhou, Matthew Keating, Patrick L. Purdon, Emery N. Brown
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/gix107

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
Cited by: 8
Author(s): Joshua Lynch, Karen Tang, Sambhawa Priya, Joanna Sands, Margaret Sands, Evan Tang, Sayan Mukherjee, Dan Knights, Ran Blekhman
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-55978-y

Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Cited by: 30
Author(s): Brooke A. Clemmons, Cameron Martino, Joshua B. Powers, Shawn R. Campagna, Brynn H. Voy, Dallas R. Donohoe, James Gaffney, Mallory Embree, Phillip R. Myer
Software Mentions: 4
Published: almost 5 years ago

10.1093/gigascience/giy032

A practical tool for maximal information coefficient analysis
Cited by: 53
Author(s): Davide Albanese, Samantha Riccadonna, Claudio Donati, Pietro Franceschi
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/giab046

NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data
Cited by: 4
Author(s): Michael D. Linderman, Crystal Paudyal, Musab Shakeel, William L. Kelley, Ali Kashif Bashir, Bruce D. Gelb
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0228422

Data-driven diagnosis of spinal abnormalities using feature selection and machine learning algorithms
Cited by: 42
Author(s): Md. Raihan-Al-Masud, M. Rubaiyat Hossain Mondal
Software Mentions: 4
Published: almost 5 years ago

10.3390/healthcare8020120

Integrated Natural Language Processing and Machine Learning Models for Standardizing Radiotherapy Structure Names
Cited by: 14
Author(s): Khajamoinuddin Syed, William C. Sleeman, Kevin Ivey, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: almost 4 years ago

10.2196/mhealth.7820

Well-Being Tracking via Smartphone-Measured Activity and Sleep: Cohort Study
Cited by: 38
Author(s): Orianna DeMasi, Sidney Feygin, Aluma Dembo, Adrián Aguilera, Benjamin Recht
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0184661

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
Cited by: 508
Author(s): Oscar Estéban, Daniel Birman, Marie Schaer, Oluwasanmi Koyejo, Russell A. Poldrack, Krzysztof J. Gorgolewski
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0216453

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function
Cited by: 12
Author(s): Claire Duvallet, Kara Larson, Scott B. Snapper, Sonia Iosim, Ann Lee, Katherine Freer, Kara May, Eric J. Alm, Rachel Rosen
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph181910438

COVID-19 Vaccine Hesitancy in the Month Following the Start of the Vaccination Process
Cited by: 25
Author(s): Liviu‐Adrian Cotfas, Camelia Delcea, Rareș Gherai
Software Mentions: 4
Published: about 3 years ago

10.7554/eLife.54082

Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Cited by: 10
Author(s): Tarun Kumar, Leo Blondel, Cassandra G. Extavour
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0249583

Innovation indicators based on firm websites—Which website characteristics predict firm-level innovation activity?
Cited by: 8
Author(s): Janna Axenbeck, Patrick Breithaupt
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13102366

Sequence Neighborhoods Enable Reliable Prediction of Pathogenic Mutations in Cancer Genomes
Cited by: 6
Author(s): Shayantan Banerjee, Karthik Raman, Balaraman Ravindran
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13153768

Machine Learning Approaches to Classify Primary and Metastatic Cancers Using Tissue of Origin-Based DNA Methylation Profiles
Cited by: 12
Author(s): Vijayachitra Modhukur, Shakshi Sharma, Mainak Mondal, Ankita Lawarde, Keiu Kask, Rajesh Sharma, Andres Salumets
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13163965

Multicenter DSC–MRI-Based Radiomics Predict IDH Mutation in Gliomas
Cited by: 21
Author(s): Georgios C. Manikis, Georgios Ioannidis, Loizos Siakallis, Katerina Nikiforaki, Cassia Michael, Diana Vozlic, Katarina Surlan-Popović, Max Wintermark, Sotirios Bisdas, Kostas Marias
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.19760

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation
Cited by: 551
Author(s): Max A. Horlbeck, Luke A. Gilbert, Jacqueline E. Villalta, Brittany Susan Adamson, Ryan A. Pak, Yu‐Wen Chen, Alexander P. Fields, Chong Yon Park, Jacob E. Corn, Martin Kampmann, Jonathan S. Weissman
Software Mentions: 4
Published: about 8 years ago

10.1016/j.chom.2018.06.005

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
Cited by: 714
Author(s): Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Alice Viappiani, Moran Yassour, Hera Vlamakis, Ramnik J. Xavier, María Carmen Collado, Omry Koren, Saverio Tateo, Massimo Soffiati, Anna Pedrotti, Marco Ventura, Curtis Huttenhower, Peer Bork, Nicola Segata
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.08.077

Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis
Cited by: 129
Author(s): Damien Arnol, Denis Schapiro, Bernd Bodenmiller, Julio Sáez-Rodríguez, Oliver Stegle
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.59780

On the objectivity, reliability, and validity of deep learning enabled bioimage analyses
Cited by: 25
Author(s): Dennis Segebarth, Matthias Griebel, Nikolai Stein, Cora R. von Collenberg, Corinna Martin, Dominik Fiedler, Lucas B. Comeras, Anupam Sah, Victoria Schoeffler, Teresa M. Lüffe, Alexander Dürr, Rohini Gupta, Manju Sasi, Christina Lillesaar, Maren D. Lange, Ramon Tasan, Nicolas Singewald, Hans‐Christian Pape, Christoph M. Flath, Robert Blum
Software Mentions: 4
Published: about 4 years ago

10.1016/j.celrep.2015.12.082

Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells
Cited by: 157
Author(s): Iain C. Macaulay, Valentine Svensson, Charlotte Labalette, Lauren Ferreira, Fiona Hamey, Thierry Voet, Sarah A. Teichmann, Ana Cvejic
Software Mentions: 4
Published: almost 9 years ago

10.3390/cells10092300

Quasar: Easy Machine Learning for Biospectroscopy
Cited by: 39
Author(s): Marko Toplak, Stuart Read, Christophe Sandt, Ferenc Borondics
Software Mentions: 4
Published: about 3 years ago

10.1093/cercor/bhx138

Attention Selectively Reshapes the Geometry of Distributed Semantic Representation
Cited by: 87
Author(s): Samuel A. Nastase, Andrew C. Connolly, Nikolaas N. Oosterhof, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Matteo Visconti di Oleggio Castello, Jason Gors, M. Ida Gobbini, James V. Haxby
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.38173

CaImAn an open source tool for scalable calcium imaging data analysis
Cited by: 495
Author(s): Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon Brown, S. A. Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey Gauthier, Pengcheng Zhou, Baljit S. Khakh, David W. Tank, Dmitri B. Chklovskii, Eftychios A. Pnevmatikakis
Software Mentions: 4
Published: almost 6 years ago

10.2196/17364

Predicting Breast Cancer in Chinese Women Using Machine Learning Techniques: Algorithm Development
Cited by: 25
Author(s): Can Hou, Xiaorong Zhong, Ping He, Bin Xu, Sha Diao, Yi Fang, Hong Zheng, Jiayuan Li
Software Mentions: 4
Published: over 4 years ago

10.2196/19069

Multidimensional Machine Learning Personalized Prognostic Model in an Early Invasive Breast Cancer Population-Based Cohort in China: Algorithm Validation Study
Cited by: 8
Author(s): Xiaorong Zhong, Ting Luo, Ling Deng, Pei Liu, Kejia Hu, Donghao Lü, Dan Zheng, Chunying Luo, Yuxin Xie, Jiayuan Li, Ping He, Tianjie Pu, Feng Ye, Hong Bu, Bo Fu, Hong Zheng
Software Mentions: 4
Published: about 4 years ago

10.1155/2021/6668985

Deep Learning Approach for Discovery of In Silico Drugs for Combating COVID-19
Cited by: 20
Author(s): Nishant Jha, Deepak Prashar, Mamoon Rashid, Mohammad Shafiq, Razaullah Khan, Catalin I. Pruncu, Shams Tabrez Siddiqui, Manindra Kumar
Software Mentions: 4
Published: over 3 years ago

10.1107/S2052252520008830

Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering
Cited by: 11
Author(s): Yen-Lin Chen, Lois Pollack
Software Mentions: 4
Published: over 4 years ago

10.1107/S2052252520000895

The predictive power of data-processing statistics
Cited by: 6
Author(s): M. Vollmar, James M. Parkhurst, Dominic Jaques, Arnaud Baslé, Garib N. Murshudov, David Waterman, Gwyndaf Evans
Software Mentions: 4
Published: over 4 years ago

10.1038/s42003-020-01233-4

A gene prioritization method based on a swine multi-omics knowledgebase and a deep learning model
Cited by: 28
Author(s): Yuhua Fu, Jingya Xu, Zhenshuang Tang, Lu Wang, Yin Ding, Yu Fan, Dongdong Zhang, Fei Deng, Yanping Zhang, Haohao Zhang, Haiyan Wang, Wenhui Xing, Lilin Yin, Shilin Zhu, Mengjin Zhu, Mei Yu, Xinyun Li, Xiaolei Liu, Xiaohui Yuan, Zhao Song
Software Mentions: 4
Published: about 4 years ago

10.1186/s40246-021-00357-w

Evaluation of low-pass genome sequencing in polygenic risk score calculation for Parkinson’s disease
Cited by: 2
Author(s): Sung-Jae Kim, Jong-Yeon Shin, Nak‐Jung Kwon, Chang-Uk Kim, Changhoon Kim, Chong Sik Lee, Jeong‐Sun Seo
Software Mentions: 4
Published: about 3 years ago

10.7554/eLife.63711

Standardized and reproducible measurement of decision-making in mice
Cited by: 72
Author(s): Valeria Aguillon-Rodriguez, Dora E. Angelaki, H Bayer, Niccolò Bonacchi, Matteo Carandini, Fanny Cazettes, Gaelle Chapuis, Anne K. Churchland, Yang Dan, Eric DeWitt, Mayo Faulkner, Hamish Forrest, Laura Haetzel, Michael Häusser, Sonja B. Hofer, Fei Hu, Anup Khanal, Christopher Krasniak, Inês Laranjeira, Zachary F. Mainen, Guido T. Meijer, Nathaniel J Miska, Thomas D. Mrsic-Flogel, Masayoshi Murakami, Jean‐Paul Noel, Alejandro Pan-Vazquez, Cyrille Rossant, Joshua I. Sanders, Karolina Socha, Rebecca Terry, Anne E Urai, Hernando Vergara, Miles J. Wells, Christian J. Wilson, Ilana B. Witten, Lauren E Wool, Anthony M. Zador
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-94696-2

Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
Cited by: 25
Author(s): Santi García-Cremades, Juan Morales-García, Rocío Hernández-Sanjaime, Raquel Martínez‐España, Andrés Bueno-Crespo, Enrique Hernández-Orallo, José J. López-Espín, José M. Cecilia
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.63377

DeepEthogram, a machine learning pipeline for supervised behavior classification from raw pixels
Cited by: 61
Author(s): James P Bohnslav, Nivanthika K Wimalasena, Kelsey J Clausing, Yu Dai, David A. Yarmolinsky, Tomás Cruz, Adam D Kashlan, M. Eugenia Chiappe, Lauren L. Orefice, Clifford J. Woolf, Christopher D. Harvey
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-021-83922-6

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
Cited by: 47
Author(s): Anna Paola Carrieri, Niina Haiminen, Sean Maudsley-Barton, Laura‐Jayne Gardiner, Barry Murphy, Andrew E. Mayes, Sarah Paterson, Sally Grimshaw, Martyn Winn, Cameron Shand, Panagiotis E. Hadjidoukas, Will Rowe, Stacy S. Hawkins, Ashley MacGuire-Flanagan, Jane Tazzioli, John Kenny, Laxmi Parida, Michael Hoptroff, Edward O. Pyzer‐Knapp
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-84003-4

Combined unsupervised-supervised machine learning for phenotyping complex diseases with its application to obstructive sleep apnea
Cited by: 12
Author(s): Eun Yeol, Jeong Whun Kim, Young-Min Lee, Sung Woo Cho, Heeyoung Kim, Jae Kyoung Kim
Software Mentions: 4
Published: over 3 years ago

10.3389/fpsyg.2021.572437

Measuring Cognitive Load Using In-Game Metrics of a Serious Simulation Game
Cited by: 9
Author(s): Natalia Sevcenko, Manuel Ninaus, Franz Wortha, Korbinian Moeller, Peter Gerjets
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.57023

Retrieval practice facilitates memory updating by enhancing and differentiating medial prefrontal cortex representations
Cited by: 14
Author(s): Zhifang Ye, Liang Shi, Anqi Li, Chuansheng Chen, Gui Xue
Software Mentions: 4
Published: over 4 years ago

10.3389/fpubh.2020.00451

Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in Acinetobacter baumannii
Cited by: 6
Author(s): Chandler C. Roe, Charles H. D. Williamson, Adam J. Vazquez, Kristen Kyger, Michael Valentine, Jolene R. Bowers, P.D. Phillips, Veronica Harrison, Elizabeth M. Driebe, David M. Engelthaler, Jason W. Sahl
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-77063-5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-74500-3

SHIFT: speedy histological-to-immunofluorescent translation of a tumor signature enabled by deep learning
Cited by: 25
Author(s): Erik Burlingame, Mary McDonnell, Geoffrey F. Schau, Guillaume Thibault, Christian Lanciault, Terry K. Morgan, Brett Johnson, Christopher L. Corless, Joe W. Gray, Young Hwan Chang
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-64870-z

Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis
Cited by: 5
Author(s): Shiori Hikichi, Masahiro Sugimoto, Masaru Tomita
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-64270-3

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Cited by: 17
Author(s): Jakub W Wojciechowski, Małgorzata Kotulska
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-017-1290-3

A tandem simulation framework for predicting mapping quality
Cited by: 14
Author(s): Ben Langmead
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-020-01983-8

High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells
Cited by: 73
Author(s): Peiyao A. Zhao, Takayo Sasaki, David M. Gilbert
Software Mentions: 4
Published: over 4 years ago

10.2196/30115

Predicting Writing Styles of Web-Based Materials for Children’s Health Education Using the Selection of Semantic Features: Machine Learning Approach
Cited by: 1
Author(s): Wenxiu Xie, Meng Ji, Yanmeng Liu, Tianyong Hao, Chee W. Chow
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-019-1644-0

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity
Cited by: 57
Author(s): Stephanie M. Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis J. McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle, Marc Jan Bonder
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13061192

Homology-Based Image Processing for Automatic Classification of Histopathological Images of Lung Tissue
Cited by: 38
Author(s): Motohiro Nishio, Masaki Nishio, Naoe Jimbo, Kazuaki Nakane
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-89848-3

A deep learning model for detection of cervical spinal cord compression in MRI scans
Cited by: 26
Author(s): Zamir Merali, Justin Z Wang, Jetan H. Badhiwala, Christopher D. Witiw, Jefferson R. Wilson, Michael G. Fehlings
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-87644-7

A deep learning model for the classification of indeterminate lung carcinoma in biopsy whole slide images
Cited by: 19
Author(s): Fahdi Kanavati, Gouji Toyokawa, Seiya Momosaki, Hiroaki Takeoka, Masaki Okamoto, Koji Yamazaki, Sadanori Takeo, Osamu Iizuka, Masayuki Tsuneki
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0174698

A general approach for predicting the behavior of the Supreme Court of the United States
Cited by: 194
Author(s): Daniel Katz, Michael James Bommarito, Josh Blackman
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers12061593

Sex-Specific Differences in Primary CNS Lymphoma
Cited by: 2
Author(s): Thomas Roetzer, Julia Furtner, Johanna Gesperger, Lukas Seebrecht, Dave Bandke, Martina Brada, Tanisa Brandner-Kokalj, Astrid Grams, Johannes Haybaeck, Melitta Kitzwoegerer, Stefan Leber, Franz Marhold, Patrizia Moser, Camillo Sherif, Johannes Trenkler, Julia Judith Unterluggauer, Serge Weis, Franz Wuertz, Johannes A. Hainfellner, Georg Langs, Karl-Heinz Nenning, Adelheid Wöehrer
Software Mentions: 3
Published: over 4 years ago

10.3390/cancers13061294

An AI-Powered Blood Test to Detect Cancer Using NanoDSF
Cited by: 7
Author(s): Philipp O. Tsvetkov, Rémi Eyraud, Stéphane Ayache, Anton Bougaev, Soazig Malesinski, Hamed Benazha, Svetlana Gorokhova, Christophe Buffat, Caroline Dehais, Marc Sanson, Franck Bielle, Dominique Figarella Branger, Olivier Chinot, Émeline Tabouret, François Devred
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-56527-3

Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data
Cited by: 123
Author(s): Aleksei Tiulpin, Stefan Klein, Sita M A Bierma-Zeinstra, Jérôme Thevenot, Esa Rahtu, Joyce B. J. van Meurs, Edwin H.G. Oei, Simo Saarakkala
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.50469

Temporal chunking as a mechanism for unsupervised learning of task-sets
Cited by: 14
Author(s): Flora Bouchacourt, Stefano Palminteri, Etienne Koechlin, Srdjan Ostojic
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-82388-w

Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis
Cited by: 10
Author(s): Ellen Færgestad Mosleth, Christian A. Vedeler, Kristian Hovde Liland, Anette McLeod, Gerd Haga Bringeland, Liesbeth Kroondijk, Frode S. Berven, Artem Lysenko, Christopher J. Rawlings, Karim Eid, Jill A. Opsahl, Bjørn Tore Gjertsen, Kjell‐Morten Myhr, Sonia Gavasso
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-61180-2

Combined behavioral and electrophysiological evidence for a direct cortical effect of prefrontal tDCS on disorders of consciousness
Cited by: 50
Author(s): Bertrand Hermann, Federico Raimondo, Lukas Hirsch, Yu Huang, Mélanie Denis-Valente, Pauline Pérez, Denis A. Engemann, Frédéric Faugeras, Nicolas Weiss, Sophie Demeret, Benjamin Rohaut, Lucas C. Parra, Jacobo Sitt, Lionel Naccache
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-020-00796-5

Integrated analysis of microbiome and host transcriptome reveals correlations between gut microbiota and clinical outcomes in HBV-related hepatocellular carcinoma
Cited by: 73
Author(s): Hechen Huang, Zhigang Ren, Xingxing Gao, Xiaoyi Hu, Yuan Zhou, Jianwen Jiang, Haifeng Lü, Shengyong Yin, Junfang Ji, Lin Zhou, Shusen Zheng
Software Mentions: 3
Published: almost 4 years ago

10.3390/cancers13020339

Radiomics and Dosiomics for Predicting Local Control after Carbon-Ion Radiotherapy in Skull-Base Chordoma
Cited by: 20
Author(s): Giulia Buizza, Chiara Paganelli, E. D’Ippolito, Giulia Fontana, Silvia Molinelli, Lorenzo Preda, Giulia Riva, Alberto Iannalfi, Francesca Valvo, Ester Orlandi, Guido Baroni
Software Mentions: 3
Published: almost 4 years ago

10.3390/cancers13081796

Multi-View Data Integration Methods for Radiotherapy Structure Name Standardization
Cited by: 4
Author(s): Khajamoinuddin Syed, William C. Sleeman, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph17051510

Detecting Binge Drinking and Alcohol-Related Risky Behaviours from Twitter’s Users: An Exploratory Content- and Topology-Based Analysis
Cited by: 11
Author(s): Cristina Crocamo, Marco Viviani, Francesco Bartoli, Giuseppe Carrà, Gabriella Pasi
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0250278

Molecular subtyping of Alzheimer’s disease with consensus non-negative matrix factorization
Cited by: 14
Author(s): Chunlei Zheng, Rong Xu
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-82098-3

A multilayer multimodal detection and prediction model based on explainable artificial intelligence for Alzheimer’s disease
Cited by: 92
Author(s): Shaker El–Sappagh, José M. Alonso, S. M. Riazul Islam, Ahmed Sultan, Kyung Sup Kwak
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0204938

“Is a picture really worth a thousand words?”: A case study on classifying user attributes on Instagram
Cited by: 21
Author(s): Junho Song, Kyungsik Han, Dongwon Lee, Sang Wook Kim
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0239781

A theoretical morphological model for quantitative description of the three-dimensional floral morphology in water lily (Nymphaea)
Cited by: 1
Author(s): Shiryu Kirié, Hideo Iwasaki, Koji Noshita, Hiroyoshi Iwata
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-77660-4

A calibrated measure to compare fluctuations of different entities across timescales
Cited by: 5
Author(s): Jan Chołoniewski, Julian Sienkiewicz, Naum Dretnik, Gregor Leban, Mike Thelwall, Janusz A. Hołyst
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-77765-w

Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
Cited by: 4
Author(s): Alessio Lugnan, Emmanuel Gooskens, Jeremy Vatin, Joni Dambre, Peter Bienstman
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-77549-2

Automated measurement of long-term bower behaviors in Lake Malawi cichlids using depth sensing and action recognition
Cited by: 3
Author(s): Zachary V. Johnson, Manu Tej Sharma Arrojwala, Vineeth Aljapur, Tyrone Lee, Tucker J. Lancaster, Mark C. Lowder, Karen Gu, Joseph Stockert, Rachel L. Lecesne, Jean Michael Moorman, J. Todd Streelman, Patrick T. McGrath
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-59988-z

A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibility
Cited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.54055

Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers
Cited by: 60
Author(s): Denis A. Engemann, Oleh Kozynets, David Sabbagh, G Lemaître, Gaël Varoquaux, Franziskus Liem, Alexandre Gramfort
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-74823-1

Predicting human health from biofluid-based metabolomics using machine learning
Cited by: 15
Author(s): Ethan D. Evans, Claire Duvallet, Nathaniel D. Chu, Michael Oberst, Michael Murphy, Isaac Rockafellow, David Sontag, Eric J. Alm
Software Mentions: 3
Published: about 4 years ago

Projects: pypi: scikit-learn

Papers Mentioning scikit-learn 2,431