Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.3390/cancers13102342
Voxelwise Principal Component Analysis of Dynamic [S-Methyl-11C]Methionine PET Data in Glioma Patients
Cited by: 9
Author(s): Corentin Martens, Olivier Debeir, Christine Decaestecker, Thierry Metens, Laetitia Lebrun, Gil Leurquin‐Sterk, Nicola Trotta, Serge Goldman, Gaëtan Van Simaeys
Software Mentions: 2
Published: over 4 years ago
10.1038/s41398-020-00965-5
Machine-learning classification using neuroimaging data in schizophrenia, autism, ultra-high risk and first-episode psychosis
Cited by: 53
Author(s): Walid Yassin, Hayato Nakatani, Yinghan Zhu, Mitsuharu Kojima, Keiho Owada, Hitoshi Kuwabara, Wataru Gonoi, Yuta Aoki, Hidemasa Takao, Tatsunobu Natsubori, Norichika Iwashiro, Kazuhiko Kasai, Yukiko Kano, Osamu Abe, Hidenori Yamasue, Shinsuke Koike
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pcbi.1008587
Four different mechanisms for switching cell polarity
Cited by: 4
Author(s): Filipe Tostevin, Manon Wigbers, Lotte Søgaard‐Andersen, Ulrich Gerland
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pcbi.1004590
Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models
Cited by: 20
Author(s): Dmitry Svetlichnyy, Hana Imrichová, Mark Fiers, Zeynep Kalender Atak, Stein Aerts
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pcbi.1008857
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Cited by: 14
Author(s): Josh L. Espinoza, Chris L. Dupont, Aubrie O’Rourke, Sinem Beyhan, Pavel Morales, Amy L. Spoering, Kirsten J. Meyer, Agnes P. Chan, Yongwook Choi, William C. Nierman, Kim Lewis, Karen E. Nelson
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pcbi.1006813
Predicting kinase inhibitors using bioactivity matrix derived informer sets
Cited by: 9
Author(s): Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton
Software Mentions: 2
Published: over 6 years ago
10.1107/S2059798320009080
Predicting protein model correctness in <i>Coot</i> using machine learning
Cited by: 17
Author(s): Paul S. Bond, K.S. Wilson, Kevin Cowtan
Software Mentions: 2
Published: over 5 years ago
10.1038/s41597-020-00646-4
Mapping twenty years of corn and soybean across the US Midwest using the Landsat archive
Cited by: 46
Author(s): Sherrie Wang, Stefania Di Tommaso, Jillian M. Deines, David B. Lobell
Software Mentions: 2
Published: about 5 years ago
10.3389/fneur.2020.00886
Multi-Dimensional, Short-Timescale Quantification of Parkinson's Disease and Essential Tremor Motor Dysfunction
Cited by: 5
Author(s): John Sanderson, James Yu, David D. Liu, Daniel E Amaya, Peter M Lauro, Anelyssa D’Abreu, Umer Akbar, Shane Lee, Wael F. Asaad
Software Mentions: 2
Published: about 5 years ago
10.1186/s12879-021-06038-2
Projecting COVID-19 disease severity in cancer patients using purposefully-designed machine learning
Cited by: 4
Author(s): Saket Navlakha, Sejal Morjaria, Rocío Pérez-Johnston, Allen Zhang, Ying Taur
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pcbi.1007318
A lipophilicity-based energy function for membrane-protein modelling and design
Cited by: 29
Author(s): Jonathan Weinstein, Assaf Elazar, Sarel J. Fleishman
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pbio.3000979
A multi-scale cortical wiring space links cellular architecture and functional dynamics in the human brain
Cited by: 61
Author(s): Casey Paquola, Jakob Seidlitz, Oualid Benkarim, Jessica Royer, Petr Klimeš, Richard A. I. Bethlehem, Sara Larivière, Reinder Vos de Wael, Raúl Rodríguez‐Cruces, Jeffery A. Hall, Birgit Frauscher, Jonathan Smallwood, Boris C. Bernhardt
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers11111680
Radiomics Model Based on Non-Contrast CT Shows No Predictive Power for Complete Pathological Response in Locally Advanced Rectal Cancer
Cited by: 22
Author(s): Gordian Hamerla, Hans‐Jonas Meyer, Peter Hambsch, U. Wolf, Thomas Kuhnt, Karl‐Titus Hoffmann, Alexey Surov
Software Mentions: 2
Published: about 6 years ago
10.1186/s12864-020-06978-0
ACEP: improving antimicrobial peptides recognition through automatic feature fusion and amino acid embedding
Cited by: 23
Author(s): Hongtuo Fu, Zicheng Cao, Mingyuan Li, Shunfang Wang
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pbio.3000611
Combining genomics and epidemiology to track mumps virus transmission in the United States
Cited by: 34
Author(s): Shirlee Wohl, Hayden C. Metsky, Stephen F. Schaffner, Anne Piantadosi, Meagan Burns, Joseph A Lewnard, Bridget Chak, Lydia A. Krasilnikova, Katherine J. Siddle, Christian B. Matranga, Bettina Bankamp, Scott Hennigan, Brandon Sabina, Elizabeth H. Byrne, Rebecca J. McNall, Rickey R. Shah, James Qu, Daniel J. Park, Soheyla D. Gharib, Susan Fitzgerald, Paul Barreira, Stephen B. Fleming, Susan M. Lett, Paul A. Rota, Lawrence C. Madoff, Nathan L. Yozwiak, Bronwyn MacInnis, Sandra Smole, Yonatan H. Grad
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0254720
Evaluating the impact of multivariate imputation by MICE in feature selection
Cited by: 22
Author(s): Maritza Mera-Gaona, Ursula Neumann, Rubiel Vargas-Cañas, Diego M. López
Software Mentions: 2
Published: over 4 years ago
10.3390/antibiotics9120861
Comprehensive Statistical Evaluation of Etest®, UMIC®, MicroScan and Disc Diffusion versus Standard Broth Microdilution: Workflow for an Accurate Detection of Colistin-Resistant and Mcr-Positive E. coli
Cited by: 8
Author(s): Isidro García-Meniño, Pilar Lumbreras, Pablo Valledor, Dafne Díaz-Jiménez, Luz Lestón, Javier Fernández, Azucena Mora
Software Mentions: 2
Published: almost 5 years ago
10.3390/plants9121751
Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana
Cited by: 3
Author(s): Yichao Li, Maxwell Mullin, Yingnan Zhang, Frank A. Drews, Lonnie R. Welch, Allan M. Showalter
Software Mentions: 2
Published: almost 5 years ago
10.3389/fneur.2019.00996
The Pragmatic Classification of Upper Extremity Motion in Neurological Patients: A Primer
Cited by: 8
Author(s): Avinash Parnandi, Jasim Uddin, Dawn Nilsen, Heidi M. Schambra
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pcbi.1007781
PlasClass improves plasmid sequence classification
Cited by: 57
Author(s): David Pellow, Itzik Mizrahi, Ron Shamir
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1008127
The covariance perceptron: A new paradigm for classification and processing of time series in recurrent neuronal networks
Cited by: 3
Author(s): Matthieu Gilson, David Dahmen, Rubén Moreno‐Bote, Andrea Insabato, Moritz Helias
Software Mentions: 2
Published: about 5 years ago
10.3390/cancers13133106
SurvCNN: A Discrete Time-to-Event Cancer Survival Estimation Framework Using Image Representations of Omics Data
Cited by: 1
Author(s): Yogesh Kalakoti, Shashank Yadav, Durai Sundar
Software Mentions: 2
Published: over 4 years ago
10.3389/fneur.2019.00655
Quantifying the Confidence in fMRI-Based Language Lateralisation Through Laterality Index Deconstruction
Cited by: 7
Author(s): Martin Wegrzyn, Markus Mertens, Christian G. Bien, Friedrich G. Woermann, Kirsten Labudda
Software Mentions: 2
Published: over 6 years ago
10.1155/2015/136921
Classification of Parkinsonian Syndromes from FDG-PET Brain Data Using Decision Trees with SSM/PCA Features
Cited by: 41
Author(s): Deborah Mudali, Laura K. Teune, Remco Renken, Klaus L. Leenders, Jos B. T. M. Roerdink
Software Mentions: 2
Published: almost 11 years ago
10.3390/cancers11111751
The Performance of Different Artificial Intelligence Models in Predicting Breast Cancer among Individuals Having Type 2 Diabetes Mellitus
Cited by: 7
Author(s): Meng-Hsuen Hsieh, Li‐Min Sun, Cheng‐Li Lin, Meng-Ju Hsieh, Chung Y. Hsu, Chia Hung Kao
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pcbi.1004456
Explaining the Timing of Natural Scene Understanding with a Computational Model of Perceptual Categorization
Cited by: 18
Author(s): Imri Sofer, Sébastien Crouzet, T. Serre
Software Mentions: 2
Published: about 10 years ago
10.3390/ijerph18168265
Effect of the COVID-19 Lockdown on Air Pollution in the Ostrava Region
Cited by: 4
Author(s): Jan Bitta, Vladislav Svozilík, Aneta Svozilíková Krakovská
Software Mentions: 2
Published: over 4 years ago
10.1038/s41398-020-01104-w
Hard for humans, hard for machines: predicting readmission after psychiatric hospitalization using narrative notes
Cited by: 8
Author(s): William Boag, Olga Kovaleva, Thomas H. McCoy, Anna Rumshisky, Peter Szolovits, Roy H. Perlis
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pcbi.1006157
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
Cited by: 110
Author(s): Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H. Macke, Srinivas C. Turaga, Patrick J. Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W. Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D. Harris, Ben Bolte, Timothy A. Machado, Dario L. Ringach, Jasmine Stone, Luke Edward Rogerson, Nicolas J. Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas S. Tolias, Matthias Bethge
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pcbi.1006954
Estimation of the breadth of CD4bs targeting HIV antibodies by molecular modeling and machine learning
Cited by: 15
Author(s): Simone Conti, Martin Karplus
Software Mentions: 2
Published: over 6 years ago
10.1186/s12918-018-0587-5
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
Cited by: 35
Author(s): Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand V. Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 7 years ago
10.1186/s12864-019-6153-8
Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
Cited by: 3
Author(s): Raúl Y. Wijfjes, Sandra Smit, Dick de Ridder
Software Mentions: 2
Published: about 6 years ago
10.1093/braincomms/fcaa202
Biomarkers of memory variability in traumatic brain injury
Cited by: 5
Author(s): Richard Adamovich‐Zeitlin, Paul A. Wanda, Ethan A. Solomon, Tung D. Phan, Bradley Lega, Barbara C. Jobst, Robert E. Gross, Kan Ding, Ramon Diaz‐Arrastia, Michael J. Kahana
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep36788
Rapid Evaporative Ionisation Mass Spectrometry (REIMS) Provides Accurate Direct from Culture Species Identification within the Genus Candida
Cited by: 44
Author(s): Simon Cameron, Frances Bolt, Alvaro Perdones‐Montero, Tony Rickards, Kate Hardiman, Alireza Abdolrasouli, Adam Burke, Zsolt Bodai, Tamás Karancsi, Daniel Simon, Richard Schaffer, Monica Rebec, Júlia Balog, Zoltán Takáts
Software Mentions: 2
Published: almost 9 years ago
10.1177/2331216518776817
Application of Data Mining to “Big Data” Acquired in Audiology: Principles and Potential
Cited by: 19
Author(s): Joseph Mellor, Michael Stone, John Keane
Software Mentions: 2
Published: almost 8 years ago
10.3389/fnbot.2020.578675
Detecting Changes and Avoiding Catastrophic Forgetting in Dynamic Partially Observable Environments
Cited by: 0
Author(s): Jeffery Dick, Paweł Ładosz, Eseoghene Ben-Iwhiwhu, Hideyasu Shimadzu, Peter Kinnell, Praveen K. Pilly, Soheil Kolouri, Andrea Soltoggio
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep44434
Quantification of arthritic bone degradation by analysis of 3D micro-computed tomography data
Cited by: 3
Author(s): Carl-Magnus Svensson, Birgit Hoffmann, Ingo M. Irmler, Maria Straßburger, Marc Thilo Figge, Hans Peter Saluz
Software Mentions: 2
Published: over 8 years ago
10.3390/molecules24040743
Machine Learning Approach for Determining the Formation of β-Lactam Antibiotic Complexes with Cyclodextrins Using Multispectral Analysis
Cited by: 5
Author(s): Mikołaj Mizera, Kornelia Lewandowska, Andrzej Miklaszewski, Judyta Cielecka‐Piontek
Software Mentions: 2
Published: over 6 years ago
10.1016/j.molcel.2018.11.031
Target-Specific Precision of CRISPR-Mediated Genome Editing
Cited by: 165
Author(s): Anob M. Chakrabarti, Tristan Henser-Brownhill, Josep Monserrat, Anna R. Poetsch, Nicholas M. Luscombe, Paola Scaffidi
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0174719
Structural features embedded in G protein-coupled receptor co-crystal structures are key to their success in virtual screening
Cited by: 11
Author(s): Thomas Coudrat, Arthur Christopoulos, Patrick M. Sexton, Denise Wootten
Software Mentions: 2
Published: over 8 years ago
10.1128/mBio.01593-17
Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in <i>Pseudomonas aeruginosa</i> Biofilms
Cited by: 41
Author(s): Brett M. Babin, Lydia Atangcho, Mark B. van Eldijk, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Tim Tolker‐Nielsen, Dianne K. Newman, David A. Tirrell
Software Mentions: 2
Published: about 8 years ago
10.3390/antibiotics8040225
A New Look at the Structures of Old Sepsis Actors by Exploratory Data Analysis Tools
Cited by: 8
Author(s): Antonio Gnoni, Emanuele De Nitto, Salvatore Scacco, Luigì Santacroce, Luigi Leonardo Palese
Software Mentions: 2
Published: almost 6 years ago
10.7717/peerj-cs.270
A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data
Cited by: 44
Author(s): Reinel Tabares-Soto, Simón Orozco-Arias, Víctor Romero-Cano, Vanesa Segovia Bucheli, José Luis Rodríguez-Sotelo, Cristian Felipe Jiménez Varón
Software Mentions: 2
Published: over 5 years ago
10.3389/fbioe.2020.00033
Tibial Acceleration-Based Prediction of Maximal Vertical Loading Rate During Overground Running: A Machine Learning Approach
Cited by: 18
Author(s): Rud Derie, Pieter Robberechts, Pieter Van den Berghe, Joeri Gerlo, Dirk De Clercq, Veerle Segers, Jesse Davis
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pgen.1007341
Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia
Cited by: 87
Author(s): Daniel R. Schrider, Julien F. Ayroles, Daniel R. Matute, Andrew D. Kern
Software Mentions: 2
Published: over 7 years ago
10.3389/fbioe.2018.00202
The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan
Cited by: 24
Author(s): Eri Nishiyama, Koichi Higashi, Hiroshi Mori, K. Suda, Hitomi Nakamura, Soichi Omori, Shigenori Maruyama, Yuichi Hongoh, Ken Kurokawa
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-019-6293-x
Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation
Cited by: 15
Author(s): Hao Chun Chang, Hsuan Cheng Huang, Hsueh Fen Juan, Chia‐Lang Hsu
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-017-11746-4
CScape: a tool for predicting oncogenic single-point mutations in the cancer genome
Cited by: 41
Author(s): Mark F. Rogers, Hashem A. Shihab, Tom R. Gaunt, Colin Campbell
Software Mentions: 2
Published: about 8 years ago
10.3390/v13081574
A Genome-Wide CRISPR/Cas9 Screen Reveals the Requirement of Host Sphingomyelin Synthase 1 for Infection with Pseudorabies Virus Mutant gD–Pass
Cited by: 6
Author(s): Julia E. Hölper, Finn Grey, J Kenneth Baillie, Tim Regan, Nick Parkinson, Dirk W. Höper, Thiprampai Thamamongood, Martin Schwemmle, Katrin Pannhorst, Lisa Wendt, Thomas C. Mettenleiter, Barbara G. Klupp
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pgen.1007872
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling
Cited by: 197
Author(s): Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling, Brian J. Beliveau, Hiroshi Sasaki, S. Dean Lee, Son C. Nguyen, Ruth B. McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M. C. Martins, Huy Nguyen, Mohammed A. Hannan, Sheikh Russell, Neva C. Durand, Suhas S.P. Rao, Jocelyn Y. Kishi, Paula Soler-Vila, Michele Di Pierro, José N. Onuchic, Steven P. Callahan, John Schreiner, Jeff A. Stuckey, Peng Yin, E Aiden, Marc A. Martí‐Renom, C-ting Wu
Software Mentions: 2
Published: almost 7 years ago
10.3389/fbioe.2020.00737
A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
Cited by: 21
Author(s): Binsheng He, Yanxiang Zhang, Zhen Zhou, Bo Wang, Yuebin Liang, Jidong Lang, Huixin Lin, Pingping Bing, Lan Yu, Dejun Sun, Huaiqing Luo, Jialiang Yang, Geng Tian
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.9562
Prediction of human fetal–maternal blood concentration ratio of chemicals
Cited by: 5
Author(s): Chia-Chi Wang, Pei Lin, Che Yu Chou, Shan Shan Wang, Chun Wei Tung
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pmed.1002709
Characterising risk of in-hospital mortality following cardiac arrest using machine learning: A retrospective international registry study
Cited by: 81
Author(s): Shane Nanayakkara, Sam Fogarty, Michael Tremeer, Kelvin Ross, Brent Richards, Christoph Bergmeir, Sheng Xu, Dion Stub, Karen Smith, Mark Tacey, Danny Liew, David Pilcher, David M. Kaye
Software Mentions: 2
Published: almost 7 years ago
10.3389/fnins.2021.708196
A Contrast Augmentation Approach to Improve Multi-Scanner Generalization in MRI
Cited by: 4
Author(s): Maria Inês Meyer, Ezequiel de la Rosa, Nuno Pedrosa de Barros, Roberto Paolella, Koen Van Leemput, Diana Sima
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-015-1264-3
Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study
Cited by: 15
Author(s): John A. Capra
Software Mentions: 2
Published: over 10 years ago
10.3390/ani10122201
Comparison of the Surface Thermal Patterns of Horses and Donkeys in Infrared Thermography Images
Cited by: 10
Author(s): Małgorzata Domino, Michał Romaszewski, Tomasz Jasiński, Małgorzata Maśko
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0223137
Classification of neurons in the adult mouse cochlear nucleus: Linear discriminant analysis
Cited by: 9
Author(s): Paul B. Manis, Michael R. Kasten, Ruili Xie
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pntd.0005962
Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs
Cited by: 12
Author(s): José Navarrete-Perea, Marta Isasa, João A. Paulo, Ricardo Corral-Corral, Jeanette Flores-Bautista, Beatriz Hernández-Téllez, Raúl J. Bobes, Gladis Fragoso, Edda Sciutto, Xavier Soberón, Steven P. Gygi, Juan Pedro Laclette
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0253809
Developing a Natural Language Processing tool to identify perinatal self-harm in electronic healthcare records
Cited by: 8
Author(s): Karyn Ayre, André Bittar, Joyce Kam, Somain Verma, Louise M. Howard, Rina Dutta
Software Mentions: 2
Published: over 4 years ago
10.3389/fbioe.2020.558880
OpSeF: Open Source Python Framework for Collaborative Instance Segmentation of Bioimages
Cited by: 7
Author(s): Tobias M. Rasse, Réka Hollandi, Péter Horváth
Software Mentions: 2
Published: about 5 years ago
10.1186/s12862-019-1552-7
tRNA functional signatures classify plastids as late-branching cyanobacteria
Cited by: 4
Author(s): Travis J Lawrence, Katherine C. H. Amrine, Wesley D. Swingley, David H. Ardell
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0241686
Evaluation of classification and forecasting methods on time series gene expression data
Cited by: 3
Author(s): Nafis Irtiza Tripto, M. R. Kabir, Md. Shamsuzzoha Bayzid, Atif Rahman
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0193152
Automatically measuring brain ventricular volume within PACS using artificial intelligence
Cited by: 21
Author(s): Fernando Yepes-Calderón, Marvin D. Nelson, J. Gordon McComb
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0108438
Combining Physicochemical and Evolutionary Information for Protein Contact Prediction
Cited by: 19
Author(s): Michael Schneider, Oliver Brock
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0107353
Combining Structural Modeling with Ensemble Machine Learning to Accurately Predict Protein Fold Stability and Binding Affinity Effects upon Mutation
Cited by: 70
Author(s): Niklas Berliner, Joan Teyra, Recep Çolak, Sebastian Garcia Lopez, Philip M. Kim
Software Mentions: 2
Published: about 11 years ago
10.1186/s13104-015-1039-6
A property-based analysis of human transcription factors
Cited by: 7
Author(s): Shahram Bahrami, Rezvan Ehsani, Finn Drabløs
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0222665
Machine learning discovery of longitudinal patterns of depression and suicidal ideation
Cited by: 12
Author(s): Jue Gong, Gregory E. Simon, Shan Liu
Software Mentions: 2
Published: about 6 years ago
10.7717/peerj.10317
Machine learning prediction of motor response after deep brain stimulation in Parkinson’s disease—proof of principle in a retrospective cohort
Cited by: 17
Author(s): Jeroen Habets, Mark Janssen, Annelien Duits, Laura C.J. Sijben, Anne E.P. Mulders, B. de Greef, Yasin Temel, Mark L. Kuijf, Pieter L. Kubben, Christian Herff
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-018-21070-0
Machine learning of correlated dihedral potentials for atomistic molecular force fields
Cited by: 21
Author(s): Pascal Friederich, Manuel Konrad, Timo Strunk, Wolfgang Wenzel
Software Mentions: 2
Published: almost 8 years ago
10.1128/mBio.02048-18
Gene Essentiality Analyzed by <i>In Vivo</i> Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of <i>Candida albicans</i>
Cited by: 96
Author(s): Ella Shtifman Segal, Vladimir Gritsenko, Anton Levitan, Bhawna Yadav, Naama Dror, Jacob L. Steenwyk, Yael Silberberg, Kevin Mielich, Antonis Rokas, Neil A. R. Gow, Reinhard Kunze, Roded Sharan, Judith Berman
Software Mentions: 2
Published: about 7 years ago
10.1128/mBio.01375-19
Chitosan Films for Microfluidic Studies of Single Bacteria and Perspectives for Antibiotic Susceptibility Testing
Cited by: 8
Author(s): Julie Tréguier, Loïc Bugnicourt, G. Gay, Mamoudou Diallo, Salim T. Islam, Alexandre Toro, Laurent David, Olivier Théodoly, Guillaume Sudre, Tâm Mignot
Software Mentions: 2
Published: about 6 years ago
10.7717/peerj.10555
Macrel: antimicrobial peptide screening in genomes and metagenomes
Cited by: 26
Author(s): Célio Dias Santos Júnior, Shaojun Pan, Xing‐Ming Zhao, Luís Pedro Coelho
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0079728
C-PAmP: Large Scale Analysis and Database Construction Containing High Scoring Computationally Predicted Antimicrobial Peptides for All the Available Plant Species
Cited by: 32
Author(s): Anastasia Niarchou, Αναστασία Αλεξανδρίδου, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 2
Published: almost 12 years ago
10.3389/fcvm.2020.591368
Radiomics Signatures of Cardiovascular Risk Factors in Cardiac MRI: Results From the UK Biobank
Cited by: 29
Author(s): Irem Cetin, Zahra Raisi‐Estabragh, Steffen E. Petersen, Sandy Napel, Stefan K. Piechnik, Stefan Neubauer, Miguel Ángel González Ballester, Óscar Cámara, Karim Lekadir
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0127659
QuantiFly: Robust Trainable Software for Automated Drosophila Egg Counting
Cited by: 27
Author(s): Dominic Waithe, Peter Rennert, Gabriel J. Brostow, Matthew D. W. Piper
Software Mentions: 2
Published: over 10 years ago
10.3389/fcvm.2021.684004
Early Prediction of Left Ventricular Reverse Remodeling in First-Diagnosed Idiopathic Dilated Cardiomyopathy: A Comparison of Linear Model, Random Forest, and Extreme Gradient Boosting
Cited by: 5
Author(s): Xinhua Xie, Mingwei Yang, Shan Xie, Xiaoying Wu, Yuan Jiang, Zhaoyu Liu, Huiying Zhao, Yangxin Chen, Yuling Zhang, Jingfeng Wang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0204371
LogLoss-BERAF: An ensemble-based machine learning model for constructing highly accurate diagnostic sets of methylation sites accounting for heterogeneity in prostate cancer
Cited by: 5
Author(s): Konstantin Babalyan, Rinat Sultanov, Edward V. Generozov, Е. И. Шарова, Elena S. Kostryukova, Andrey K. Larin, Alexandra Kanygina, Vadim M. Govorun, Georgij Arapidi
Software Mentions: 2
Published: about 7 years ago
10.1007/s00227-018-3318-y
Development and application of a machine learning algorithm for classification of elasmobranch behaviour from accelerometry data
Cited by: 66
Author(s): Lauran R. Brewster, Jonathan J. Dale, T. L. Guttridge, Samuel H. Gruber, Alexander C. Hansell, Michael Elliott, I. G. Cowx, Nicholas M. Whitney, Adrian C. Gleiss
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0228105
Machine learning for syndromic surveillance using veterinary necropsy reports
Cited by: 13
Author(s): Nathan Bollig, Lorelei L. Clarke, Elizabeth J. Elsmo, Mark Craven
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0198806
Information spreading by a combination of MEG source estimation and multivariate pattern classification
Cited by: 21
Author(s): Masashi Sato, Okito Yamashita, Masa‐aki Sato, Yoichi Miyawaki
Software Mentions: 2
Published: over 7 years ago
10.1016/j.celrep.2021.109566
Synchronization patterns reveal neuronal coding of working memory content
Cited by: 11
Author(s): Fahimeh Mamashli, Sheraz Khan, Matti S. Hämäläinen, Mainak Jas, Tommi Raij, Steven M. Stufflebeam, Aapo Nummenmaa, Jyrki Ahveninen
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0245234
Supervised machine learning for automated classification of human Wharton’s Jelly cells and mechanosensory hair cells
Cited by: 1
Author(s): Abihith Kothapalli, Hinrich Staecker, Adam J. Mellott
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0234647
FasTag: Automatic text classification of unstructured medical narratives
Cited by: 20
Author(s): Guhan Venkataraman, Arturo López Pineda, Oliver J. Bear Don’t Walk, Ashley Zehnder, Sandeep Ayyar, Rodney L. Page, Carlos D. Bustamante, Manuel A. Rivas
Software Mentions: 2
Published: over 5 years ago
10.1080/01969722.2018.1556438
Modeling Mentor-Mentee Dialogues in Film
Cited by: 0
Author(s): Anna Dobrosovestnova, Marcin Skowron, Sabine Payr, Robert Trappl
Software Mentions: 2
Published: over 6 years ago
10.3389/fcell.2021.605977
Prediction of Lymph-Node Metastasis in Cancers Using Differentially Expressed mRNA and Non-coding RNA Signatures
Cited by: 4
Author(s): Shihua Zhang, Cheng Zhang, Jinke Du, Rui Zhang, Shixiong Yang, Bo Li, Pingping Wang, Wensheng Deng
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0253302
Predicting malaria epidemics in Burkina Faso with machine learning
Cited by: 8
Author(s): David Harvey, Wessel Valkenburg, Amara Amara
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0223318
Enhancing timeliness of drug overdose mortality surveillance: A machine learning approach
Cited by: 16
Author(s): Patrick Ward, Peter Rock, Svetla Slavova, April M. Young, Terry Bunn, Ramakanth Kavuluru
Software Mentions: 2
Published: about 6 years ago
10.3389/fnins.2017.00754
White Matter Tract Segmentation as Multiple Linear Assignment Problems
Cited by: 13
Author(s): Nusrat Sharmin, Emanuele Olivetti, Paolo Avesani
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12859-020-3505-y
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes
Cited by: 3
Author(s): Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence T. Yang, Jaehyung Kim
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0230599
Understanding biochemical design principles with ensembles of canonical non-linear models
Cited by: 4
Author(s): Lukas Bromig, Andreas Kremling, Alberto Marı́n-Sanguino
Software Mentions: 2
Published: over 5 years ago
10.1038/s41408-020-0322-5
Combining gene expression profiling and machine learning to diagnose B-cell non-Hodgkin lymphoma
Cited by: 19
Author(s): Victor Bobée, Fanny Drieux, Vinciane Marchand, Vincent Sater, Liana Veresezan, Jean‐Michel Picquenot, Pierre‐Julien Viailly, Marie‐Delphine Lanic, Mathieu Viennot, Élodie Bohers, Lucie Obéric, Christiane Copie‐Bergman, Thierry Jo Molina, Philippe Gaulard, Corinne Haı̈oun, Gilles Salles, Hervé Tilly, Fabrice Jardin, Philippe Ruminy
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-018-25891-x
Sensory representation of an auditory cued tactile stimulus in the posterior parietal cortex of the mouse
Cited by: 16
Author(s): Hemanth Mohan, Yasir Gallero‐Salas, Stefano Carta, João Sacramento, Balazs Laurenczy, Lazar T. Sumanovski, De Kock, Fritjof Helmchen, Shankar Sachidhanandam
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-018-23534-9
Extracting biological age from biomedical data via deep learning: too much of a good thing?
Cited by: 78
Author(s): Timothy V. Pyrkov, Konstantin Slipensky, Mikhail Barg, Alexey Kondrashin, Boris Zhurov, Aleksandr Zenin, Mikhail A. Pyatnitskiy, L. I. Men’shikov, Sergei Markov, П. О. Федичев
Software Mentions: 2
Published: over 7 years ago
10.1128/mSphere.00218-18
Rifampin- or Capreomycin-Induced Remodeling of the <i>Mycobacterium smegmatis</i> Mycolic Acid Layer Is Mitigated in Synergistic Combinations with Cationic Antimicrobial Peptides
Cited by: 10
Author(s): DeDe Kwun-Wai Man, Tokuwa Kanno, Giorgia Manzo, Brian D. Robertson, Jason T. Lam, A. James Mason
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0205097
Novel knowledge-based system with relation detection and textual evidence for question answering research
Cited by: 4
Author(s): Haitao Zheng, Zuo-You Fu, Jin‐Yuan Chen, Arun Kumar Sangaiah, Yong Jiang, Cong-Zhi Zhao
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0243622
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches
Cited by: 11
Author(s): David S. Campo, Joseph W. Gussler, Amanda Sue, Pavel Skums, Yury Khudyakov
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0199089
Feature selection for the accurate prediction of septic and cardiogenic shock ICU mortality in the acute phase
Cited by: 22
Author(s): Alexander Aushev, Vicent Ribas Ripoll, Alfredo Vellido, Federico Aletti, Bernardo Bollen Pinto, Antoine Herpain, Emiel Hendrik Post, Eduardo Romay Medina, Ricard Ferrer, Giuseppe Baselli, Karim Bendjelid
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-27627-3
Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics
Cited by: 42
Author(s): Anna Lundmark, Natalija Gerasimčik, Tove Båge, Anders Jemt, Annelie Mollbrink, Fredrik Salmén, Joakim Lundeberg, Tülay Yucel‐Lindberg
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0208924
Distillation of the clinical algorithm improves prognosis by multi-task deep learning in high-risk Neuroblastoma
Cited by: 17
Author(s): Valerio Maggio, Marco Chierici, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSphere.00530-20
PhenoGMM: Gaussian Mixture Modeling of Cytometry Data Quantifies Changes in Microbial Community Structure
Cited by: 16
Author(s): Peter Rubbens, Ruben Props, Frederiek‐Maarten Kerckhof, Nico Boon, Willem Waegeman
Software Mentions: 2
Published: over 4 years ago