Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: almost 3 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.1155/2015/457071
Spatial Patterns of the Indications of Acupoints Using Data Mining in Classic Medical Text: A Possible Visualization of the Meridian System
Cited by: 17
Author(s): Won-Mo Jung, Taehyung Lee, In-Seon Lee, Sang-Hyun Kim, Hyunchul Jang, Song-Yi Kim, Hi-Joon Park, Younbyoung Chae
Software Mentions: 2
Published: over 11 years ago
10.3390/biom10101460
Predicting Deep Learning Based Multi-Omics Parallel Integration Survival Subtypes in Lung Cancer Using Reverse Phase Protein Array Data
Cited by: 33
Author(s): Satoshi Takahashi, Ken Asada, Ken Takasawa, Ryo Shimoyama, Akira Sakai, Amina Bolatkan, Norio Shinkai, Kazuma Kobayashi, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Software Mentions: 2
Published: almost 6 years ago
10.12688/f1000research.16415.1
Large-scale protein function prediction using heterogeneous ensembles
Cited by: 11
Author(s): Linhua Wang, Jeffrey Law, Shiv D. Kale, T. M. Murali, Gaurav Pandey
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-019-39815-w
Utilisation of Ambient Laser Desorption Ionisation Mass Spectrometry (ALDI-MS) Improves Lipid-Based Microbial Species Level Identification
Cited by: 19
Author(s): Simon Cameron, Zsolt Bodai, Burak Temelkuran, Alvaro Perdones‐Montero, Frances Bolt, Adam Burke, Kate Alexander-Hardiman, Michel Salzet, Isabelle Fournier, Monica Rebec, Zoltán Takáts
Software Mentions: 2
Published: over 7 years ago
10.12688/f1000research.25750.1
RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development
Cited by: 2
Author(s): Maria G. Ivanchenko, Olivia R. Ozguc, Stephanie R. Bollmann, Valerie N. Fraser, Molly Megraw
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-38464-9
Four-dimensional joint visualization of electrode degradation and liquid water distribution inside operating polymer electrolyte fuel cells
Cited by: 35
Author(s): Robin White, Sebastian H. Eberhardt, Yadvinder Singh, Tylynn Haddow, Monica Dutta, Francesco P. Orfino, Erik Kjeang
Software Mentions: 2
Published: over 7 years ago
10.7717/peerj.11790
Fusion neural networks for plant classification: learning to combine RGB, hyperspectral, and lidar data
Cited by: 8
Author(s): Victoria Scholl, Joe McGlinchy, Teo Price-Broncucia, Jennifer K. Balch, Maxwell B. Joseph
Software Mentions: 2
Published: about 5 years ago
10.1186/s12859-018-2082-9
DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strains
Cited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-018-35582-2
Comparison of machine learning models for the prediction of mortality of patients with unplanned extubation in intensive care units
Cited by: 32
Author(s): Meng Hsuen Hsieh, Meng Ju Hsieh, Chin‐Ming Chen, Chih-Chang Hsieh, Chien‐Ming Chao, Chih‐Cheng Lai
Software Mentions: 2
Published: almost 8 years ago
10.1016/j.bpj.2020.04.032
Protein-Folding Analysis Using Features Obtained by Persistent Homology
Cited by: 12
Author(s): Takashi Ichinomiya, Ippei Obayashi, Yasuaki Hiraoka
Software Mentions: 2
Published: over 6 years ago
10.3390/molecules24040743
Machine Learning Approach for Determining the Formation of β-Lactam Antibiotic Complexes with Cyclodextrins Using Multispectral Analysis
Cited by: 5
Author(s): Mikołaj Mizera, Kornelia Lewandowska, Andrzej Miklaszewski, Judyta Cielecka‐Piontek
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-021-04272-8
A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns
Cited by: 0
Author(s): Wan Kin Au Yeung, Osamu Maruyama, Hidetada Sasaki
Software Mentions: 2
Published: about 5 years ago
10.3389/fonc.2018.00627
Data-Driven Discovery of Immune Contexture Biomarkers
Cited by: 19
Author(s): Lars Ole Schwen, Emilia Andersson, Konstanty Korski, Nick Weiss, Sabrina Haase, Fabien Gaire, Horst K. Hahn, André Homeyer, Oliver Grimm
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-020-3474-1
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces
Cited by: 3
Author(s): Felippe C. Queiroz, Adriana Maria Patarroyo Vargas, M. G. A. Oliveira, Giovanni Comarela, Simonton Andrade Silveira
Software Mentions: 2
Published: over 6 years ago
10.1038/s41408-020-0322-5
Combining gene expression profiling and machine learning to diagnose B-cell non-Hodgkin lymphoma
Cited by: 19
Author(s): Victor Bobée, Fanny Drieux, Vinciane Marchand, Vincent Sater, Liana Veresezan, Jean‐Michel Picquenot, Pierre‐Julien Viailly, Marie‐Delphine Lanic, Mathieu Viennot, Élodie Bohers, Lucie Obéric, Christiane Copie‐Bergman, Thierry Jo Molina, Philippe Gaulard, Corinne Haı̈oun, Gilles Salles, Hervé Tilly, Fabrice Jardin, Philippe Ruminy
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-017-1729-2
RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers
Cited by: 16
Author(s): Nicola Lazzarini, Jaume Bacardit
Software Mentions: 2
Published: about 9 years ago
10.1038/s41598-018-33110-w
Potential identification of vitamin B6 responsiveness in autism spectrum disorder utilizing phenotype variables and machine learning methods
Cited by: 16
Author(s): Taku Obara, Mami Ishikuro, Gen Tamiya, Masao Ueki, Chizuru Yamanaka, Satoshi Mizuno, Masahiro Kikuya, Hirohito Metoki, Hiroko Matsubara, Masato Nagai, Tomoko Kobayashi, Machiko Kamiyama, M Watanabe, Kazuhiko Kakuta, Minami Ouchi, Akiko Kurihara, Naru Fukuchi, Akihiro Yasuhara, Masumi Inagaki, Makiko Kaga, Shigeo Kure, Shinichi Kuriyama
Software Mentions: 2
Published: almost 8 years ago
10.3389/fnagi.2019.00167
Radiomic Features of the Nigrosome-1 Region of the Substantia Nigra: Using Quantitative Susceptibility Mapping to Assist the Diagnosis of Idiopathic Parkinson's Disease
Cited by: 41
Author(s): Zenghui Cheng, Jiping Zhang, Naying He, Li Yan, Yaofeng Wen, Hongmin Xu, Rongbiao Tang, Zhijia Jin, E. Mark Haacke, Fuhua Yan, Dahong Qian
Software Mentions: 2
Published: about 7 years ago
10.1093/braincomms/fcaa202
Biomarkers of memory variability in traumatic brain injury
Cited by: 5
Author(s): Richard Adamovich‐Zeitlin, Paul A. Wanda, Ethan A. Solomon, Tung D. Phan, Bradley Lega, Barbara C. Jobst, Robert E. Gross, Kan Ding, Ramon Diaz‐Arrastia, Michael J. Kahana
Software Mentions: 2
Published: over 5 years ago
10.1186/s12859-021-04270-w
PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets
Cited by: 21
Author(s): Léa Pradier, Tazzio Tissot, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2105-15-93
SPiCE: a web-based tool for sequence-based protein classification and exploration
Cited by: 16
Author(s): Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder
Software Mentions: 2
Published: over 12 years ago
10.7717/peerj.488
Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning
Cited by: 198
Author(s): Dan Stowell, Mark D. Plumbley
Software Mentions: 2
Published: about 12 years ago
10.1038/s41598-018-27627-3
Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics
Cited by: 42
Author(s): Anna Lundmark, Natalija Gerasimčik, Tove Båge, Anders Jemt, Annelie Mollbrink, Fredrik Salmén, Joakim Lundeberg, Tülay Yucel‐Lindberg
Software Mentions: 2
Published: about 8 years ago
10.3390/brainsci11081049
Using Machine Learning Algorithms for Identifying Gait Parameters Suitable to Evaluate Subtle Changes in Gait in People with Multiple Sclerosis
Cited by: 9
Author(s): Katrin Trentzsch, Paula Schumann, Grzegorz Śliwiński, Paul Bartscht, Rocco Haase, Dirk Schriefer, Andreas Zink, Andreas Heinke, Thurid Jochim, Hagen Malberg, Tjalf Ziemssen
Software Mentions: 2
Published: about 5 years ago
10.3389/fonc.2020.597486
A Urine-Based Liquid Biopsy Method for Detection of Upper Tract Urinary Carcinoma
Cited by: 11
Author(s): Yan Xu, Xin Ma, Xing Ai, Jiangping Gao, Yiming Liang, Qin Zhang, Tao Ma, Kaisheng Mao, Qiwen Zheng, Sizhen Wang, Yuchen Jiao, Xu Zhang, Hongzhao Li
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-018-23534-9
Extracting biological age from biomedical data via deep learning: too much of a good thing?
Cited by: 78
Author(s): Timothy V. Pyrkov, Konstantin Slipensky, Mikhail Barg, Alexey Kondrashin, Boris Zhurov, Aleksandr Zenin, Mikhail A. Pyatnitskiy, L. I. Men’shikov, Sergei Markov, П. О. Федичев
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-018-25891-x
Sensory representation of an auditory cued tactile stimulus in the posterior parietal cortex of the mouse
Cited by: 16
Author(s): Hemanth Mohan, Yasir Gallero‐Salas, Stefano Carta, João Sacramento, Balazs Laurenczy, Lazar T. Sumanovski, De Kock, Fritjof Helmchen, Shankar Sachidhanandam
Software Mentions: 2
Published: over 8 years ago
10.3389/frai.2021.624629
An Attempt to Boost Posterior Population Expansion Using Fast Machine Learning Algorithms
Cited by: 3
Author(s): Przemysław Juda, Philippe Renard
Software Mentions: 2
Published: over 5 years ago
10.1016/j.patter.2020.100087
Cellular State Transformations Using Deep Learning for Precision Medicine Applications
Cited by: 7
Author(s): Colin Targonski, M. Reed Bender, Benjamin T. Shealy, Benafsh Husain, Bill Paseman, Melinda Smith, F. Alex Feltus
Software Mentions: 2
Published: about 6 years ago
10.1186/s12864-019-6153-8
Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
Cited by: 3
Author(s): Raúl Y. Wijfjes, Sandra Smit, Dick de Ridder
Software Mentions: 2
Published: almost 7 years ago
10.3390/brainsci11040521
Differentiating Real-World Autobiographical Experiences without Recourse to Behaviour
Cited by: 0
Author(s): Jonathan Erez, Mélanie Gagnon, Adrian M. Owen
Software Mentions: 2
Published: over 5 years ago
10.3389/frai.2021.579931
Predicting the Disease Outcome in COVID-19 Positive Patients Through Machine Learning: A Retrospective Cohort Study With Brazilian Data
Cited by: 25
Author(s): Fernanda Sumika Hojo de Souza, Natália Satchiko Hojo-Souza, Edimilson Batista dos Santos, Cristiano M. Silva, Daniel L. Guidoni
Software Mentions: 2
Published: about 5 years ago
10.3390/brainsci10050319
Logistic Regression Algorithm Differentiates Gulf War Illness (GWI) Functional Magnetic Resonance Imaging (fMRI) Data from a Sedentary Control
Cited by: 4
Author(s): Destie Provenzano, Stuart D. Washington, Yuan James Rao, Murray H. Loew, James N. Baraniuk
Software Mentions: 2
Published: over 6 years ago
10.3389/fonc.2021.621088
Predicting Survival Duration With MRI Radiomics of Brain Metastases From Non-small Cell Lung Cancer
Cited by: 20
Author(s): Bihong T. Chen, Taihao Jin, Ningrong Ye, Isa Mambetsariev, Tao Wang, Chi Wah Wong, Zikuan Chen, Russell C. Rockne, Rivka R. Colen, Andrei I. Holodny, Sagus Sampath, Ravi Salgia
Software Mentions: 2
Published: over 5 years ago
10.3390/genes9100478
An Improved Method for Prediction of Cancer Prognosis by Network Learning
Cited by: 32
Author(s): Min‐Seon Kim, Ilhwan Oh, Jaegyoon Ahn
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-018-21070-0
Machine learning of correlated dihedral potentials for atomistic molecular force fields
Cited by: 21
Author(s): Pascal Friederich, Manuel Konrad, Timo Strunk, Wolfgang Wenzel
Software Mentions: 2
Published: over 8 years ago
10.12688/wellcomeopenres.16718.1
An automated approach to identify scientific publications reporting pharmacokinetic parameters
Cited by: 6
Author(s): Ferran Gonzalez Hernandez, Simon J. Carter, Juha Iso-Sipilä, Paul C. Goldsmith, Ahmed Almousa, Silke Gastine, Watjana Lilaonitkul, Frank Kloprogge, Joseph F. Standing
Software Mentions: 2
Published: over 5 years ago
10.12688/wellcomeopenres.15617.3
Longitudinal trajectories of brain age in young individuals at familial risk of mood disorder from the Scottish Bipolar Family Study
Cited by: 3
Author(s): Laura de Nooij, Mathew A. Harris, Emma L. Hawkins, Toni‐Kim Clarke, Xueyi Shen, Stella W. Y. Chan, Tim Ziermans, Andrew M. McIntosh, Heather C. Whalley
Software Mentions: 2
Published: almost 6 years ago
10.12688/wellcomeopenres.15201.3
Prediction of mosquito species and population age structure using mid-infrared spectroscopy and supervised machine learning
Cited by: 26
Author(s): Mario González‐Jiménez, Simon A. Babayan, Pegah Khazaeli, Margaret Doyle, Finlay Walton, Elliott Reedy, Thomas Glew, Mafalda Viana, Lisa Ranford-Cartwright, Abdoulaye Niang, Doreen J. Siria, Fredros O. Okumu, Abdoulaye Diabaté, Heather M. Ferguson, Francesco Baldini, Klaas Wynne
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-017-11746-4
CScape: a tool for predicting oncogenic single-point mutations in the cancer genome
Cited by: 41
Author(s): Mark F. Rogers, Hashem A. Shihab, Tom R. Gaunt, Colin Campbell
Software Mentions: 2
Published: almost 9 years ago
10.3389/fninf.2019.00070
ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data
Cited by: 171
Author(s): Taban Eslami, Vahid Mirjalili, A.C.M. Fong, Angela R. Laird, Fahad Saeed
Software Mentions: 2
Published: almost 7 years ago
10.1016/j.wroa.2021.100093
Predictive water virology using regularized regression analyses for projecting virus inactivation efficiency in ozone disinfection
Cited by: 9
Author(s): Syun suke Kadoya, Osamu Nishimura, Hiroyuki Kato, Daisuke Sano
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21165814
DispHred: A Server to Predict pH-Dependent Order–Disorder Transitions in Intrinsically Disordered Proteins
Cited by: 14
Author(s): Jaime Santos, Valentín Iglesias, Carlos Pintado, Juan Santos-Suárez, Salvador Ventura
Software Mentions: 2
Published: about 6 years ago
10.3389/fonc.2020.01363
Identification of Predominant Histopathological Growth Patterns of Colorectal Liver Metastasis by Multi-Habitat and Multi-Sequence Based Radiomics Analysis
Cited by: 27
Author(s): Yujia Han, Fan Chai, Jingwei Wei, Yali Yue, Jin Cheng, Dongsheng Gu, Yinli Zhang, Tong Tong, Weiqi Sheng, Nan Hong, Yingjiang Ye, Yi Wang, Jie Tian
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pmed.1002709
Characterising risk of in-hospital mortality following cardiac arrest using machine learning: A retrospective international registry study
Cited by: 81
Author(s): Shane Nanayakkara, Sam Fogarty, Michael Tremeer, Kelvin Ross, Brent Richards, Christoph Bergmeir, Sheng Xu, Dion Stub, Karen Smith, Mark Tacey, Danny Liew, David Pilcher, David M. Kaye
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pgen.1007872
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling
Cited by: 197
Author(s): Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling, Brian J. Beliveau, Hiroshi Sasaki, S. Dean Lee, Son C. Nguyen, Ruth B. McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M. C. Martins, Huy Nguyen, Mohammed A. Hannan, Sheikh Russell, Neva C. Durand, Suhas S.P. Rao, Jocelyn Y. Kishi, Paula Soler-Vila, Michele Di Pierro, José N. Onuchic, Steven P. Callahan, John Schreiner, Jeff A. Stuckey, Peng Yin, E Aiden, Marc A. Martí‐Renom, C-ting Wu
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-020-3437-6
Identification of early mild cognitive impairment using multi-modal data and graph convolutional networks
Cited by: 17
Author(s): Jin Liu, Guanxin Tan, Wei Lan, Jianxin Wang
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-019-3050-8
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection
Cited by: 46
Author(s): Alejandro Lopez-Rincon, Marlet Martínez‐Archundia, Gustavo Ulises Martínez-Ruiz, Alexander Schoenhuth, Alberto Tonda
Software Mentions: 2
Published: almost 7 years ago
10.3390/ijms21249548
DockingApp RF: A State-of-the-Art Novel Scoring Function for Molecular Docking in a User-Friendly Interface to AutoDock Vina
Cited by: 13
Author(s): Gabriele Macari, Daniele Toti, Andrea Pasquadibisceglie, Fabio Polticelli
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.36652
Functional gradients of the cerebellum
Cited by: 264
Author(s): Xavier Guell, Jeremy D. Schmahmann, John D. E. Gabrieli, Samik Ghosh
Software Mentions: 2
Published: about 8 years ago
10.3390/ijms22062847
An Inverse QSAR Method Based on a Two-Layered Model and Integer Programming
Cited by: 5
Author(s): Yu Shi, Jianshen Zhu, Naveed Ahmed Azam, Kazuya Haraguchi, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.60336
The amygdala instructs insular feedback for affective learning
Cited by: 14
Author(s): Dominic Kargl, Joanna Kaczanowska, Sophia Ulonska, Florian Groessl, Łukasz Piszczek, Jelena Lazović, Katja Buehler, Wulf Haubensak
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pgen.1007341
Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia
Cited by: 87
Author(s): Daniel R. Schrider, Julien F. Ayroles, Daniel R. Matute, Andrew D. Kern
Software Mentions: 2
Published: over 8 years ago
10.3390/v13081574
A Genome-Wide CRISPR/Cas9 Screen Reveals the Requirement of Host Sphingomyelin Synthase 1 for Infection with Pseudorabies Virus Mutant gD–Pass
Cited by: 6
Author(s): Julia E. Hölper, Finn Grey, J Kenneth Baillie, Tim Regan, Nick Parkinson, Dirk W. Höper, Thiprampai Thamamongood, Martin Schwemmle, Katrin Pannhorst, Lisa Wendt, Thomas C. Mettenleiter, Barbara G. Klupp
Software Mentions: 2
Published: about 5 years ago
10.1186/s12859-019-3054-4
Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection
Cited by: 21
Author(s): Jinhong Shi, Yan Yan, Matthew G. Links, Longhai Li, Jo-Anne R. Dillon, Michael C. Horsch, Anthony Kusalik
Software Mentions: 2
Published: almost 7 years ago
10.7554/eLife.57148
Dynamic encoding of social threat and spatial context in the hypothalamus
Cited by: 14
Author(s): Piotr Krzywkowski, Beatrice Penna, Cornelius Gross
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.08935
Human blindsight is mediated by an intact geniculo-extrastriate pathway
Cited by: 101
Author(s): Sara Ajina, Franco Pestilli, Ariel Rokem, Christopher Kennard, Holly Bridge
Software Mentions: 2
Published: almost 11 years ago
10.1038/srep44434
Quantification of arthritic bone degradation by analysis of 3D micro-computed tomography data
Cited by: 3
Author(s): Carl-Magnus Svensson, Birgit Hoffmann, Ingo M. Irmler, Maria Straßburger, Marc Thilo Figge, Hans Peter Saluz
Software Mentions: 2
Published: over 9 years ago
10.2196/21559
Analysis of Scientific Publications During the Early Phase of the COVID-19 Pandemic: Topic Modeling Study
Cited by: 42
Author(s): Andreas Älgå, Oskar Eriksson, M. E. Nordberg
Software Mentions: 2
Published: almost 6 years ago
10.2196/14337
Surveilling Influenza Incidence With Centers for Disease Control and Prevention Web Traffic Data: Demonstration Using a Novel Dataset
Cited by: 4
Author(s): Wendy K. Caldwell, Geoffrey Fairchild, Sara Y. Del Valle
Software Mentions: 2
Published: about 6 years ago
10.7554/eLife.62046
Single-molecule view of coordination in a multi-functional DNA polymerase
Cited by: 10
Author(s): Raymond F. Pauszek, Rajan Lamichhane, Arishma Rajkarnikar Singh, David P. Millar
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pntd.0005962
Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs
Cited by: 12
Author(s): José Navarrete-Perea, Marta Isasa, João A. Paulo, Ricardo Corral-Corral, Jeanette Flores-Bautista, Beatriz Hernández-Téllez, Raúl J. Bobes, Gladis Fragoso, Edda Sciutto, Xavier Soberón, Steven P. Gygi, Juan Pedro Laclette
Software Mentions: 2
Published: almost 9 years ago
10.7554/eLife.45160
Attentional amplification of neural codes for number independent of other quantities along the dorsal visual stream
Cited by: 47
Author(s): Elisa Castaldi, Manuela Piazza, Stanislas Dehaene, Alexandre Vignaud, Evelyn Eger
Software Mentions: 2
Published: about 7 years ago
10.3390/metabo10060237
QSRR Automator: A Tool for Automating Retention Time Prediction in Lipidomics and Metabolomics
Cited by: 27
Author(s): Bradley C. Naylor, J. Leon Catrow, J. Alan Maschek, James E. Cox
Software Mentions: 2
Published: about 6 years ago
10.7554/eLife.42138
Motor context dominates output from purkinje cell functional regions during reflexive visuomotor behaviours
Cited by: 35
Author(s): Laura D. Knogler, Andreas M. Kist, Rubén Portugues
Software Mentions: 2
Published: over 7 years ago
10.1093/ve/veaa106
Tuning intrinsic disorder predictors for virus proteins
Cited by: 3
Author(s): Gal Almog, Abayomi S Olabode, Art F. Y. Poon
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.63591
Functional specialization within the inferior parietal lobes across cognitive domains
Cited by: 49
Author(s): Ole Numssen, Danilo Bzdok, Gesa Hartwigsen
Software Mentions: 2
Published: over 5 years ago
10.1534/g3.116.038448
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 9 years ago
10.7554/eLife.61277
Neuronal timescales are functionally dynamic and shaped by cortical microarchitecture
Cited by: 122
Author(s): Richard Gao, Ruud L. van den Brink, Thomas Pfeffer, Bradley Voytek
Software Mentions: 2
Published: almost 6 years ago
10.2196/15547
Applying Machine Learning to Daily-Life Data From the TrackYourTinnitus Mobile Health Crowdsensing Platform to Predict the Mobile Operating System Used With High Accuracy: Longitudinal Observational Study
Cited by: 11
Author(s): Rüdiger Pryss, Winfried Schlee, Burkhard Hoppenstedt, Manfred Reichert, Myra Spiliopoulou, Berthold Langguth, Marius Breitmayer, Thomas Probst
Software Mentions: 2
Published: about 6 years ago
10.2196/25431
Tracking COVID-19 Discourse on Twitter in North America: Infodemiology Study Using Topic Modeling and Aspect-Based Sentiment Analysis
Cited by: 87
Author(s): Hyeju Jang, Emily Rempel, David R. Roth, Giuseppe Carenini, Naveed Z. Janjua
Software Mentions: 2
Published: over 5 years ago
10.1038/srep36788
Rapid Evaporative Ionisation Mass Spectrometry (REIMS) Provides Accurate Direct from Culture Species Identification within the Genus Candida
Cited by: 44
Author(s): Simon Cameron, Frances Bolt, Alvaro Perdones‐Montero, Tony Rickards, Kate Hardiman, Alireza Abdolrasouli, Adam Burke, Zsolt Bodai, Tamás Karancsi, Daniel Simon, Richard Schaffer, Monica Rebec, Júlia Balog, Zoltán Takáts
Software Mentions: 2
Published: almost 10 years ago
10.3389/fninf.2018.00055
Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network Connectivity
Cited by: 15
Author(s): Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva, Vince D. Calhoun
Software Mentions: 2
Published: about 8 years ago
10.7554/eLife.10134
Affinity and dose of TCR engagement yield proportional enhancer and gene activity in CD4+ T cells
Cited by: 62
Author(s): Karmel A. Allison, Enikö Sajti, Jana G. Collier, David Gosselin, Ty D. Troutman, Erica L. Stone, Stephen M. Hedrick, Christopher K. Glass
Software Mentions: 2
Published: about 10 years ago
10.1128/mSystems.00775-21
Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis
Cited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-019-6293-x
Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation
Cited by: 15
Author(s): Hao Chun Chang, Hsuan Cheng Huang, Hsueh Fen Juan, Chia‐Lang Hsu
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-020-03915-6
Modeling drug mechanism of action with large scale gene-expression profiles using GPAR, an artificial intelligence platform
Cited by: 18
Author(s): Shengqiao Gao, Lu Han, Dan Luo, Gang Liu, Zhiyong Xiao, Guangcun Shan, Yongxiang Zhang, Wenxia Zhou
Software Mentions: 2
Published: over 5 years ago
10.1128/mSystems.00656-19
Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data
Cited by: 30
Author(s): Nenad Macesic, Oliver J. Bear Don’t Walk, Itsik Pe’er, Nicholas P. Tatonetti, Anton Y. Peleg, Anne Catrin Uhlemann
Software Mentions: 2
Published: about 6 years ago
10.1038/s41597-020-00646-4
Mapping twenty years of corn and soybean across the US Midwest using the Landsat archive
Cited by: 46
Author(s): Sherrie Wang, Stefania Di Tommaso, Jillian M. Deines, David B. Lobell
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSystems.00219-18
q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data
Cited by: 180
Author(s): Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, LI Hui-lin, Paul S. Albert, J. Gregory Caporaso
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0254720
Evaluating the impact of multivariate imputation by MICE in feature selection
Cited by: 22
Author(s): Maritza Mera-Gaona, Ursula Neumann, Rubiel Vargas-Cañas, Diego M. López
Software Mentions: 2
Published: about 5 years ago
10.1128/mSphere.00530-20
PhenoGMM: Gaussian Mixture Modeling of Cytometry Data Quantifies Changes in Microbial Community Structure
Cited by: 16
Author(s): Peter Rubbens, Ruben Props, Frederiek‐Maarten Kerckhof, Nico Boon, Willem Waegeman
Software Mentions: 2
Published: over 5 years ago
10.1128/mSphere.00218-18
Rifampin- or Capreomycin-Induced Remodeling of the <i>Mycobacterium smegmatis</i> Mycolic Acid Layer Is Mitigated in Synergistic Combinations with Cationic Antimicrobial Peptides
Cited by: 10
Author(s): DeDe Kwun-Wai Man, Tokuwa Kanno, Giorgia Manzo, Brian D. Robertson, Jason T. Lam, A. James Mason
Software Mentions: 2
Published: about 8 years ago
10.1128/mBio.01375-19
Chitosan Films for Microfluidic Studies of Single Bacteria and Perspectives for Antibiotic Susceptibility Testing
Cited by: 8
Author(s): Julie Tréguier, Loïc Bugnicourt, G. Gay, Mamoudou Diallo, Salim T. Islam, Alexandre Toro, Laurent David, Olivier Théodoly, Guillaume Sudre, Tâm Mignot
Software Mentions: 2
Published: about 7 years ago
10.1128/mBio.02048-18
Gene Essentiality Analyzed by <i>In Vivo</i> Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of <i>Candida albicans</i>
Cited by: 96
Author(s): Ella Shtifman Segal, Vladimir Gritsenko, Anton Levitan, Bhawna Yadav, Naama Dror, Jacob L. Steenwyk, Yael Silberberg, Kevin Mielich, Antonis Rokas, Neil A. R. Gow, Reinhard Kunze, Roded Sharan, Judith Berman
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12864-015-1264-3
Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study
Cited by: 15
Author(s): John A. Capra
Software Mentions: 2
Published: over 11 years ago
10.1186/s12911-020-01329-1
Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosis
Cited by: 13
Author(s): Bin Ma, Zhaolong Wu, Shengyu Li, Ryan Benton, Dongqi Li, Yulong Huang, Mohan Vamsi Kasukurthi, Jingwei Lin, Glen M. Borchert, Shaobo Tan, Gang Li, Meihong Yang, Jingshan Huang
Software Mentions: 2
Published: almost 6 years ago
10.2196/jmir.3532
The Reliability of Tweets as a Supplementary Method of Seasonal Influenza Surveillance
Cited by: 84
Author(s): Anoshé A Aslam, Ming‐Hsiang Tsou, Brian H. Spitzberg, Li An, Jean Mark Gawron, Dipak Kumar Gupta, K. Michael Peddecord, Anna Nagel, Christopher Allen, Jiue-An Yang, Suzanne P. Lindsay
Software Mentions: 2
Published: almost 12 years ago
10.2196/24246
A Machine Learning Prediction Model of Respiratory Failure Within 48 Hours of Patient Admission for COVID-19: Model Development and Validation
Cited by: 70
Author(s): Siavash Bolourani, Max Brenner, Haichao Wang, Thomas McGinn, Jamie S. Hirsch, Douglas P. Barnaby, Theodoros P. Zanos
Software Mentions: 2
Published: over 5 years ago
10.1128/mBio.01593-17
Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in <i>Pseudomonas aeruginosa</i> Biofilms
Cited by: 41
Author(s): Brett M. Babin, Lydia Atangcho, Mark B. van Eldijk, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Tim Tolker‐Nielsen, Dianne K. Newman, David A. Tirrell
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12862-019-1552-7
tRNA functional signatures classify plastids as late-branching cyanobacteria
Cited by: 4
Author(s): Travis J Lawrence, Katherine C. H. Amrine, Wesley D. Swingley, David H. Ardell
Software Mentions: 2
Published: almost 7 years ago
10.1016/j.molcel.2018.11.031
Target-Specific Precision of CRISPR-Mediated Genome Editing
Cited by: 165
Author(s): Anob M. Chakrabarti, Tristan Henser-Brownhill, Josep Monserrat, Anna R. Poetsch, Nicholas M. Luscombe, Paola Scaffidi
Software Mentions: 2
Published: over 7 years ago
10.2196/26302
Using Tweets to Understand How COVID-19–Related Health Beliefs Are Affected in the Age of Social Media: Twitter Data Analysis Study
Cited by: 36
Author(s): Hanyin Wang, Yikuan Li, Meghan R. Hutch, Andrew M. Naidech, Yuan Luo
Software Mentions: 2
Published: over 5 years ago
10.1126/sciadv.abd7954
Prostaglandin E <sub>2</sub> promotes intestinal inflammation via inhibiting microbiota-dependent regulatory T cells
Cited by: 39
Author(s): Siobhan Crittenden, Marie Goepp, Jolinda Pollock, Calum T. Robb, Danielle J. Smyth, You Zhou, Robert Andrews, Victoria J. Tyrrell, Konstantinos Gkikas, Alexander Adima, Richard A. O’Connor, Luke C. Davies, Xuefeng Li, Hatti X. Yao, Gwo‐Tzer Ho, Xiaozhong Zheng, Amil Mair, Sonja Vermeren, Bin‐Zhi Qian, Damian J. Mole, Konstantinos Gerasimidis, Jürgen Schwarze, Richard M. Breyer, Mark J. Arends, Valerie Bridget O'Donnell, John P. Iredale, Stephen M. Anderton, Shuh Narumiya, Rick M. Maizels, Adriano G. Rossi, Sarah Howie, Chengcan Yao
Software Mentions: 2
Published: over 5 years ago
10.1186/s12859-020-03944-1
PCirc: random forest-based plant circRNA identification software
Cited by: 13
Author(s): Shuwei Yin, Xiao Tian, Jingjing Zhang, Peisen Sun, Guanglin Li
Software Mentions: 2
Published: over 5 years ago
10.1126/sciadv.aav0693
New tolerance factor to predict the stability of perovskite oxides and halides
Cited by: 666
Author(s): Christopher J. Bartel, Christopher Sutton, Bryan R. Goldsmith, Runhai Ouyang, Charles B. Musgrave, Luca M. Ghiringhelli, Matthias Scheffler
Software Mentions: 2
Published: over 7 years ago
10.1177/2331216518776817
Application of Data Mining to “Big Data” Acquired in Audiology: Principles and Potential
Cited by: 19
Author(s): Joseph Mellor, Michael Stone, John Keane
Software Mentions: 2
Published: over 8 years ago
10.3389/fneur.2021.670944
A Set of Eight Key Questions Helps to Classify Common Vestibular Disorders—Results From the DizzyReg Patient Registry
Cited by: 7
Author(s): Ralf Strobl, Michael Grözinger, Andreas Zwergal, Doreen Huppert, Filipp Filippopulos, Eva Grill
Software Mentions: 2
Published: over 5 years ago
10.1038/s41398-020-01104-w
Hard for humans, hard for machines: predicting readmission after psychiatric hospitalization using narrative notes
Cited by: 8
Author(s): William Boag, Olga Kovaleva, Thomas H. McCoy, Anna Rumshisky, Peter Szolovits, Roy H. Perlis
Software Mentions: 2
Published: over 5 years ago
10.1038/s41398-020-00965-5
Machine-learning classification using neuroimaging data in schizophrenia, autism, ultra-high risk and first-episode psychosis
Cited by: 53
Author(s): Walid Yassin, Hayato Nakatani, Yinghan Zhu, Mitsuharu Kojima, Keiho Owada, Hitoshi Kuwabara, Wataru Gonoi, Yuta Aoki, Hidemasa Takao, Tatsunobu Natsubori, Norichika Iwashiro, Kazuhiko Kasai, Yukiko Kano, Osamu Abe, Hidenori Yamasue, Shinsuke Koike
Software Mentions: 2
Published: about 6 years ago