pypi: scikit-learn | Projects | Ecosyste.ms: Papers

10.3390/cancers13102342

Voxelwise Principal Component Analysis of Dynamic [S-Methyl-11C]Methionine PET Data in Glioma Patients
Cited by: 9
Author(s): Corentin Martens, Olivier Debeir, Christine Decaestecker, Thierry Metens, Laetitia Lebrun, Gil Leurquin‐Sterk, Nicola Trotta, Serge Goldman, Gaëtan Van Simaeys
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11111680

Radiomics Model Based on Non-Contrast CT Shows No Predictive Power for Complete Pathological Response in Locally Advanced Rectal Cancer
Cited by: 22
Author(s): Gordian Hamerla, Hans‐Jonas Meyer, Peter Hambsch, U. Wolf, Thomas Kuhnt, Karl‐Titus Hoffmann, Alexey Surov
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-020-00990-y

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Cited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0245234

Supervised machine learning for automated classification of human Wharton’s Jelly cells and mechanosensory hair cells
Cited by: 1
Author(s): Abihith Kothapalli, Hinrich Staecker, Adam J. Mellott
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.63591

Functional specialization within the inferior parietal lobes across cognitive domains
Cited by: 49
Author(s): Ole Numssen, Danilo Bzdok, Gesa Hartwigsen
Software Mentions: 2
Published: over 3 years ago

10.1093/braincomms/fcaa202

Biomarkers of memory variability in traumatic brain injury
Cited by: 5
Author(s): Richard Adamovich‐Zeitlin, Paul A. Wanda, Ethan A. Solomon, Tung D. Phan, Bradley Lega, Barbara C. Jobst, Robert E. Gross, Kan Ding, Ramon Diaz‐Arrastia, Michael J. Kahana
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers13133106

SurvCNN: A Discrete Time-to-Event Cancer Survival Estimation Framework Using Image Representations of Omics Data
Cited by: 1
Author(s): Yogesh Kalakoti, Shashank Yadav, Durai Sundar
Software Mentions: 2
Published: over 3 years ago

10.1534/genetics.116.195214

Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps
Cited by: 114
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers11111751

The Performance of Different Artificial Intelligence Models in Predicting Breast Cancer among Individuals Having Type 2 Diabetes Mellitus
Cited by: 7
Author(s): Meng-Hsuen Hsieh, Li‐Min Sun, Cheng‐Li Lin, Meng-Ju Hsieh, Chung Y. Hsu, Chia Hung Kao
Software Mentions: 2
Published: about 5 years ago

10.1186/s13059-016-0957-5

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
Cited by: 62
Author(s): Valentina Proserpio, Andrea Piccolo, Liora Haim-Vilmovsky, Gozde Kar, Tapio Lönnberg, Valentine Svensson, Jhuma Pramanik, Kedar Nath Natarajan, Weichao Zhai, Xiuwei Zhang, Giacomo Donati, Melis Kayikci, Jurij Kotar, Andrew N. J. McKenzie, Ruddy Montandon, Oliver Billker, Steven Woodhouse, Pietro Cicuta, Mario Nicodemi, Sarah A. Teichmann
Software Mentions: 2
Published: over 8 years ago

10.1186/s13059-017-1189-z

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning
Cited by: 340
Author(s): Christof Angermueller, Heather Lee, Wolf Reik
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-018-2535-1

Sequence-based bacterial small RNAs prediction using ensemble learning strategies
Cited by: 14
Author(s): Guifeng Tang, Jingwen Shi, Wenjian Wu, Xiang Yue, Wen Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12911-020-01356-y

Explanation and prediction of clinical data with imbalanced class distribution based on pattern discovery and disentanglement
Cited by: 9
Author(s): Pei-Yuan Zhou, Andrew K. C. Wong
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0234647

FasTag: Automatic text classification of unstructured medical narratives
Cited by: 20
Author(s): Guhan Venkataraman, Arturo López Pineda, Oliver J. Bear Don’t Walk, Ashley Zehnder, Sandeep Ayyar, Rodney L. Page, Carlos D. Bustamante, Manuel A. Rivas
Software Mentions: 2
Published: over 4 years ago

10.1016/j.molcel.2018.11.031

Target-Specific Precision of CRISPR-Mediated Genome Editing
Cited by: 165
Author(s): Anob M. Chakrabarti, Tristan Henser-Brownhill, Josep Monserrat, Anna R. Poetsch, Nicholas M. Luscombe, Paola Scaffidi
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41408-020-0322-5

Combining gene expression profiling and machine learning to diagnose B-cell non-Hodgkin lymphoma
Cited by: 19
Author(s): Victor Bobée, Fanny Drieux, Vinciane Marchand, Vincent Sater, Liana Veresezan, Jean‐Michel Picquenot, Pierre‐Julien Viailly, Marie‐Delphine Lanic, Mathieu Viennot, Élodie Bohers, Lucie Obéric, Christiane Copie‐Bergman, Thierry Jo Molina, Philippe Gaulard, Corinne Haı̈oun, Gilles Salles, Hervé Tilly, Fabrice Jardin, Philippe Ruminy
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.42138

Motor context dominates output from purkinje cell functional regions during reflexive visuomotor behaviours
Cited by: 35
Author(s): Laura D. Knogler, Andreas M. Kist, Rubén Portugues
Software Mentions: 2
Published: almost 6 years ago

10.3390/molecules24040743

Machine Learning Approach for Determining the Formation of β-Lactam Antibiotic Complexes with Cyclodextrins Using Multispectral Analysis
Cited by: 5
Author(s): Mikołaj Mizera, Kornelia Lewandowska, Andrzej Miklaszewski, Judyta Cielecka‐Piontek
Software Mentions: 2
Published: almost 6 years ago

10.3390/molecules24152752

Revisiting the Allosteric Regulation of Sodium Cation on the Binding of Adenosine at the Human A2A Adenosine Receptor: Insights from Supervised Molecular Dynamics (SuMD) Simulations
Cited by: 7
Author(s): Maicol Bissaro, Giovanni Bolcato, Giuseppe Deganutti, Mattia Sturlese, Stefano Moro
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules24102025

Applications of Photonics in Agriculture Sector: A Review
Cited by: 26
Author(s): Tan Jin Yeong, Pin Jern Ker, Kuen Yao Lau, M. A. Hannan, Shirley Gee Hoon Tang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-020-03944-1

PCirc: random forest-based plant circRNA identification software
Cited by: 13
Author(s): Shuwei Yin, Xiao Tian, Jingjing Zhang, Peisen Sun, Guanglin Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-019-1776-2

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation
Cited by: 62
Author(s): Channabasavaiah B. Gurumurthy, Aidan O’Brien, Rolen M. Quadros, John Adams, Pilar Alcaide, Shin-ichi Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Ève Beauchamp, Kathleen A. Becker, Guillaume Bernas, David Brough, Francisco Carrillo‐Salinas, Wesley Chan, Hanying Chen, Ruby Dawson, Victoria DeMambro, Jinke D’Hont, Katharine M. Dibb, James D. Eudy, Lin Gan, Jing Gao, Amy Gonzales, Anyonya R. Guntur, Hongqian Guo, Donald W. Harms, Anne Harrington, Kathryn E. Hentges, Neil Humphreys, Shiho Imai, Hideshi Ishii, Mizuho Iwama, Eric Jonasch, Michelle Karolak, Bernard Keavney, Nay Chi Khin, Masamitsu Konno, Yuko Kotani, Yayoi Kunihiro, Imayavaramban Lakshmanan, Catherine Larochelle, Catherine B. Lawrence, Lin Li, Volkhard Lindner, Xian De Liu, Gloria López-Castejón, A. S. I. Loudon, Jenna Lowe, Loydie A. Jerome-Majewska, Taiji Matsusaka, Hiromi Miura, Yoshiki Miyasaka, Benjamin Morpurgo, Katherine J. Motyl, Yo Ichi Nabeshima, Koji Nakade, Toshiaki Nakashiba, Ken‐ichi Nakashima, Yuichi Obata, Sanae Ogiwara, Mario Ouellet, Leif Oxburgh, Sandra Piltz, Ilka Pinz, Moorthy P. Ponnusamy, David Ray, Ronald Redder, Clifford J. Rosen, Nikki Ross, Mark T. Ruhe, Larisa Ryzhova, Ane M. Salvador, Sabrina Alam, Radislav Sedláček, Karan Sharma, Chad Smith, Katrien Staes, Lora Starrs, Fumihiro Sugiyama, Satoru Takahashi, Tomohiro Tanaka, Andrew W. Trafford, Yoshihiro Uno, Leen Vanhoutte, Frederique Vanrockeghem, Brandon Willis, Christian S Wright, Yuko Yamauchi, Xin Yi, Kazuto Yoshimi, Xuesong Zhang, Yu Zhang, Masato Ohtsuka, Satyabrata Das, Daniel J. Garry, Tino Hochepied, Paul Q. Thomas, Jan Parker-Thornburg, Antony Adamson, Atsushi Yoshiki, Jean Francois Schmouth, Андрей Головко, William R. Thompson, Kevin C K Lloyd, Joshua A. Wood, Mitra Cowan, Tomoji Mashimo, Seiya Mizuno, Min Zhu, Petr Kašpárek, Lucy Liaw, Joseph M. Miano, Gaétan Burgio
Software Mentions: 2
Published: about 5 years ago

10.3390/plants9121751

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana
Cited by: 3
Author(s): Yichao Li, Maxwell Mullin, Yingnan Zhang, Frank A. Drews, Lonnie R. Welch, Allan M. Showalter
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-021-04272-8

A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns
Cited by: 0
Author(s): Wan Kin Au Yeung, Osamu Maruyama, Hidetada Sasaki
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules26010020

Anomaly Identification during Polymerase Chain Reaction for Detecting SARS-CoV-2 Using Artificial Intelligence Trained from Simulated Data
Cited by: 3
Author(s): Reynaldo Villarreal-González, Antonio Acosta-Hoyos, Jaime A Garzon-Ochoa, Nataly J. Galán‐Freyle, Paola Amar-Sepúlveda, Leonardo C. Pacheco‐Londoño
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules26154678

CYPstrate: A Set of Machine Learning Models for the Accurate Classification of Cytochrome P450 Enzyme Substrates and Non-Substrates
Cited by: 4
Author(s): Malte Holmer, Christina de Bruyn Kops, Conrad Stork, Johannes Kirchmair
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules25245901

Towards Deep Neural Network Models for the Prediction of the Blood–Brain Barrier Permeability for Diverse Organic Compounds
Cited by: 17
Author(s): Eugene V. Radchenko, Alina S Dyabina, Vladimir A. Palyulin
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-020-03603-5

A cell-level quality control workflow for high-throughput image analysis
Cited by: 3
Author(s): Minhua Qiu, Bin Zhou, Frederick Lo, Steven C. Cook, Jason Chyba, Doug Quackenbush, Jason Matzen, Zhizhong Li, Puiying A. Mak, Kaisheng Chen, Yingyao Zhou
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0253302

Predicting malaria epidemics in Burkina Faso with machine learning
Cited by: 8
Author(s): David Harvey, Wessel Valkenburg, Amara Amara
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0223318

Enhancing timeliness of drug overdose mortality surveillance: A machine learning approach
Cited by: 16
Author(s): Patrick Ward, Peter Rock, Svetla Slavova, April M. Young, Terry Bunn, Ramakanth Kavuluru
Software Mentions: 2
Published: about 5 years ago

10.1016/j.celrep.2021.109566

Synchronization patterns reveal neuronal coding of working memory content
Cited by: 11
Author(s): Fahimeh Mamashli, Sheraz Khan, Matti S. Hämäläinen, Mainak Jas, Tommi Raij, Steven M. Stufflebeam, Aapo Nummenmaa, Jyrki Ahveninen
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-020-02065-5

Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
Cited by: 18
Author(s): C. Anthony Scott, Jack D. Duryea, Harry A. Mackay, Maria S. Baker, Eleonora Laritsky, T.D.C.P. Gunasekara, Cristian Coarfa, Robert A. Waterland
Software Mentions: 2
Published: over 4 years ago

10.1186/s12911-021-01510-0

Explainable AI enables clinical trial patient selection to retrospectively improve treatment effects in schizophrenia
Cited by: 3
Author(s): Monika S. Mellem, Matthew Kollada, Jane Tiller, Thomas Z. Lauritzen
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-020-02251-5

Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
Cited by: 26
Author(s): Santiago G. Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini
Software Mentions: 2
Published: almost 4 years ago

10.1093/ve/veaa106

Tuning intrinsic disorder predictors for virus proteins
Cited by: 3
Author(s): Gal Almog, Abayomi S Olabode, Art F. Y. Poon
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.bpj.2020.04.032

Protein-Folding Analysis Using Features Obtained by Persistent Homology
Cited by: 12
Author(s): Takashi Ichinomiya, Ippei Obayashi, Yasuaki Hiraoka
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj-cs.270

A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data
Cited by: 44
Author(s): Reinel Tabares-Soto, Simón Orozco-Arias, Víctor Romero-Cano, Vanesa Segovia Bucheli, José Luis Rodríguez-Sotelo, Cristian Felipe Jiménez Varón
Software Mentions: 2
Published: over 4 years ago

10.3390/v13081574

A Genome-Wide CRISPR/Cas9 Screen Reveals the Requirement of Host Sphingomyelin Synthase 1 for Infection with Pseudorabies Virus Mutant gD–Pass
Cited by: 6
Author(s): Julia E. Hölper, Finn Grey, J Kenneth Baillie, Tim Regan, Nick Parkinson, Dirk W. Höper, Thiprampai Thamamongood, Martin Schwemmle, Katrin Pannhorst, Lisa Wendt, Thomas C. Mettenleiter, Barbara G. Klupp
Software Mentions: 2
Published: over 3 years ago

10.1016/j.wroa.2021.100093

Predictive water virology using regularized regression analyses for projecting virus inactivation efficiency in ozone disinfection
Cited by: 9
Author(s): Syun suke Kadoya, Osamu Nishimura, Hiroyuki Kato, Daisuke Sano
Software Mentions: 2
Published: over 3 years ago

10.1016/j.celrep.2020.02.094

Machine Learning Uncovers Food- and Excipient-Drug Interactions
Cited by: 34
Author(s): Daniel Reker, Yulei Shi, Ameya R. Kirtane, Kaitlyn Hess, Grace Zhong, Evan Crane, Chin‐Feng Lin, Robert Langer, Giovanni Traverso
Software Mentions: 2
Published: over 4 years ago

10.12688/wellcomeopenres.15201.3

Prediction of mosquito species and population age structure using mid-infrared spectroscopy and supervised machine learning
Cited by: 26
Author(s): Mario González‐Jiménez, Simon A. Babayan, Pegah Khazaeli, Margaret Doyle, Finlay Walton, Elliott Reedy, Thomas Glew, Mafalda Viana, Lisa Ranford-Cartwright, Abdoulaye Niang, Doreen J. Siria, Fredros O. Okumu, Abdoulaye Diabaté, Heather M. Ferguson, Francesco Baldini, Klaas Wynne
Software Mentions: 2
Published: about 5 years ago

10.12688/wellcomeopenres.15617.3

Longitudinal trajectories of brain age in young individuals at familial risk of mood disorder from the Scottish Bipolar Family Study
Cited by: 3
Author(s): Laura de Nooij, Mathew A. Harris, Emma L. Hawkins, Toni‐Kim Clarke, Xueyi Shen, Stella W. Y. Chan, Tim Ziermans, Andrew M. McIntosh, Heather C. Whalley
Software Mentions: 2
Published: about 4 years ago

10.12688/wellcomeopenres.16718.1

An automated approach to identify scientific publications reporting pharmacokinetic parameters
Cited by: 6
Author(s): Ferran Gonzalez Hernandez, Simon J. Carter, Juha Iso-Sipilä, Paul C. Goldsmith, Ahmed Almousa, Silke Gastine, Watjana Lilaonitkul, Frank Kloprogge, Joseph F. Standing
Software Mentions: 2
Published: over 3 years ago

10.2196/21559

Analysis of Scientific Publications During the Early Phase of the COVID-19 Pandemic: Topic Modeling Study
Cited by: 42
Author(s): Andreas Älgå, Oskar Eriksson, M. E. Nordberg
Software Mentions: 2
Published: about 4 years ago

10.1016/j.patter.2020.100087

Cellular State Transformations Using Deep Learning for Precision Medicine Applications
Cited by: 7
Author(s): Colin Targonski, M. Reed Bender, Benjamin T. Shealy, Benafsh Husain, Bill Paseman, Melinda Smith, F. Alex Feltus
Software Mentions: 2
Published: about 4 years ago

10.2196/jmir.3532

The Reliability of Tweets as a Supplementary Method of Seasonal Influenza Surveillance
Cited by: 84
Author(s): Anoshé A Aslam, Ming‐Hsiang Tsou, Brian H. Spitzberg, Li An, Jean Mark Gawron, Dipak Kumar Gupta, K. Michael Peddecord, Anna Nagel, Christopher Allen, Jiue-An Yang, Suzanne P. Lindsay
Software Mentions: 2
Published: about 10 years ago

10.3390/biom10101460

Predicting Deep Learning Based Multi-Omics Parallel Integration Survival Subtypes in Lung Cancer Using Reverse Phase Protein Array Data
Cited by: 33
Author(s): Satoshi Takahashi, Ken Asada, Ken Takasawa, Ryo Shimoyama, Akira Sakai, Amina Bolatkan, Norio Shinkai, Kazuma Kobayashi, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Software Mentions: 2
Published: about 4 years ago

10.1186/s13059-021-02499-5

Biologically relevant transfer learning improves transcription factor binding prediction
Cited by: 21
Author(s): Gherman Novakovsky, Manu Saraswat, Oriol Fornés, Sara Mostafavi, Wyeth W. Wasserman
Software Mentions: 2
Published: about 3 years ago

10.7717/peerj.488

Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning
Cited by: 198
Author(s): Dan Stowell, Mark D. Plumbley
Software Mentions: 2
Published: over 10 years ago

10.1186/s12911-018-0710-y

Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictability
Cited by: 30
Author(s): Telma Pereira, Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira
Software Mentions: 2
Published: almost 6 years ago

10.3390/biom11091337

Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues
Cited by: 1
Author(s): Ruiyang Song, Baixin Cao, Zhenling Peng, Christopher J. Oldfield, Lukasz Kurgan, Ka-Chun Wong, Jianyi Yang
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2105-15-93

SPiCE: a web-based tool for sequence-based protein classification and exploration
Cited by: 16
Author(s): Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder
Software Mentions: 2
Published: over 10 years ago

10.3390/biom9020043

NP-Scout: Machine Learning Approach for the Quantification and Visualization of the Natural Product-Likeness of Small Molecules
Cited by: 43
Author(s): Chen Ya, Conrad Stork, Steffen Hirte, Johannes Kirchmair
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13073-017-0456-7

Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Cited by: 66
Author(s): Qian Liu, Peng Zhang, Depeng Wang, Wei Gu, Kai Wang
Software Mentions: 2
Published: over 7 years ago

10.3390/cells9020326

Computational Detection of Breast Cancer Invasiveness with DNA Methylation Biomarkers
Cited by: 5
Author(s): Chuyu Wang, Ning Zhao, Linlin Yuan, Xiaoyan Liu
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13073-019-0686-y

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
Cited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 5 years ago

10.2196/14337

Surveilling Influenza Incidence With Centers for Disease Control and Prevention Web Traffic Data: Demonstration Using a Novel Dataset
Cited by: 4
Author(s): Wendy K. Caldwell, Geoffrey Fairchild, Sara Y. Del Valle
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-021-04270-w

PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets
Cited by: 21
Author(s): Léa Pradier, Tazzio Tissot, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme
Software Mentions: 2
Published: over 3 years ago

10.2196/24246

A Machine Learning Prediction Model of Respiratory Failure Within 48 Hours of Patient Admission for COVID-19: Model Development and Validation
Cited by: 70
Author(s): Siavash Bolourani, Max Brenner, Haichao Wang, Thomas McGinn, Jamie S. Hirsch, Douglas P. Barnaby, Theodoros P. Zanos
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-017-1729-2

RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers
Cited by: 16
Author(s): Nicola Lazzarini, Jaume Bacardit
Software Mentions: 2
Published: over 7 years ago

10.1186/s13073-021-00957-0

Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis
Cited by: 36
Author(s): Vinod Kumar Gupta, Kevin Y. Cunningham, Benjamin Hur, Utpal Bakshi, Harvey Huang, Kenneth J. Warrington, Veena Taneja, Elena Myasoedova, John M. Davis, Jaeyun Sung
Software Mentions: 2
Published: about 3 years ago

10.1186/2047-217X-3-28

How machine learning is shaping cognitive neuroimaging
Cited by: 101
Author(s): Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: about 10 years ago

10.1186/s12859-018-2082-9

DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strains
Cited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 6 years ago

10.1093/texcom/tgaa066

Cortical Tuning is Impaired After Perceptual Experience in Primary Visual Cortex of Serotonin Transporter-Deficient Mice
Cited by: 0
Author(s): Alexandr Pak, Alexander A. Chubykin
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0230599

Understanding biochemical design principles with ensembles of canonical non-linear models
Cited by: 4
Author(s): Lukas Bromig, Andreas Kremling, Alberto Marı́n-Sanguino
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.57148

Dynamic encoding of social threat and spatial context in the hypothalamus
Cited by: 14
Author(s): Piotr Krzywkowski, Beatrice Penna, Cornelius Gross
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-016-0895-y

CP-CHARM: segmentation-free image classification made accessible
Cited by: 53
Author(s): Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter
Software Mentions: 2
Published: almost 9 years ago

10.3390/healthcare8030272

Automatic Incident Triage in Radiation Oncology Incident Learning System
Cited by: 10
Author(s): Khajamoinuddin Syed, William C. Sleeman, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 2
Published: over 4 years ago

10.1039/c9sc05999g

Benchmarking the acceleration of materials discovery by sequential learning
Cited by: 74
Author(s): Brian A. Rohr, Helge S. Stein, Dan Guevarra, Yu Wang, Joel A. Haber, Muratahan Aykol, Santosh K. Suram, John M. Gregoire
Software Mentions: 2
Published: almost 5 years ago

10.2196/26302

Using Tweets to Understand How COVID-19–Related Health Beliefs Are Affected in the Age of Social Media: Twitter Data Analysis Study
Cited by: 36
Author(s): Hanyin Wang, Yikuan Li, Meghan R. Hutch, Andrew M. Naidech, Yuan Luo
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0205097

Novel knowledge-based system with relation detection and textual evidence for question answering research
Cited by: 4
Author(s): Haitao Zheng, Zuo-You Fu, Jin‐Yuan Chen, Arun Kumar Sangaiah, Yong Jiang, Cong-Zhi Zhao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0243622

Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches
Cited by: 11
Author(s): David S. Campo, Joseph W. Gussler, Amanda Sue, Pavel Skums, Yury Khudyakov
Software Mentions: 2
Published: almost 4 years ago

10.1109/JTEHM.2019.2940900

Automated Detection of Parkinson’s Disease Based on Multiple Types of Sustained Phonations Using Linear Discriminant Analysis and Genetically Optimized Neural Network
Cited by: 116
Author(s): Liaqat Ali, Ce Zhu, Zhonghao Zhang, Yipeng Liu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1007608

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens
Cited by: 44
Author(s): Jason C. Hyun, Erol Kavvas, Jonathan M. Monk, Jaehyung Kim
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-018-2197-z

Automatic extraction of informal topics from online suicidal ideation
Cited by: 21
Author(s): Reilly N. Grant, David Kucher, Ana M. León, Jonathan Gemmell, Daniela Raicu, Samah Jamal Fodeh
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0208924

Distillation of the clinical algorithm improves prognosis by multi-task deep learning in high-risk Neuroblastoma
Cited by: 17
Author(s): Valerio Maggio, Marco Chierici, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 2
Published: almost 6 years ago

10.1098/rsfs.2016.0018

Development of an open technology sensor suite for assisted living: a student-led research project
Cited by: 4
Author(s): James D. Manton, Josie Hughes, Oliver Bonner, Omar A. Amjad, Philip Mair, Isabella Miele, Tiesheng Wang, Vitaly Levdik, Richard Hall, Géraldine Baekelandt, Fernando da Cruz Vasconcellos, O. Hadeler, Tanya Hutter, Clemens F. Kaminski
Software Mentions: 2
Published: over 8 years ago

10.1001/jamanetworkopen.2019.7314

Comparative Effectiveness of New Approaches to Improve Mortality Risk Models From Medicare Claims Data
Cited by: 19
Author(s): Harlan M. Krumholz, Andreas Coppi, Frederick Warner, Elizabeth W. Triche, Shuxia Li, Shiwani Mahajan, Yixin Li, Susannah M. Bernheim, Jacqueline N. Grady, Karen Dorsey, Zhenqiu Lin, Sharon‐Lise T. Normand
Software Mentions: 2
Published: over 5 years ago

10.1186/s12911-019-0841-9

Automatically determining cause of death from verbal autopsy narratives
Cited by: 13
Author(s): Serena Jeblee, Mireille Gomes, Prabhat Jha, Frank Rudzicz, Graeme Hirst
Software Mentions: 2
Published: over 5 years ago

10.1001/jamanetworkopen.2020.2875

Assessment of Potentially Inappropriate Prescribing of Opioid Analgesics Requiring Prior Opioid Tolerance
Cited by: 5
Author(s): Molly Moore Jeffery, Christine E. Chaisson, Christopher A. Hane, Louis Rumanes, Jamie Tucker, Lillian Hang, Rozalina G. McCoy, Catherine L. Chen, Mark C. Bicket, W. Michael Hooten, Marc R. Larochelle, William C. Becker, Cynthia Kornegay, Judith A. Racoosin, Darshak M. Sanghavi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0170625

Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking
Cited by: 7
Author(s): Alexander Sasse, Sjoerd J. de Vries, Christina Schindler, Isaure Chauvot de Beauchêne, Martin Zacharias
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0219683

Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
Cited by: 30
Author(s): Betty Wutzl, Kenji Leibnitz, Frank Rattay, Martin Kronbichler, Masayuki Murata, Stefan Golaszewski
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01535-7

Fast automated detection of COVID-19 from medical images using convolutional neural networks
Cited by: 38
Author(s): Shuang Liang, Huixiang Liu, Yu Gu, Xiuhua Guo, Hongjun Li, Li Li, Zhiyuan Wu, Mengyang Li, Lixin Tao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12911-020-1104-5

How to automatically turn patient experience free-text responses into actionable insights: a natural language programming (NLP) approach
Cited by: 14
Author(s): Simone A. Cammel, Marit S. de Vos, Daphne van Soest, Kristina Hettne, F. Boer, Ewout W. Steyerberg, Hileen Boosman
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-019-0707-9

Decoding speech from spike-based neural population recordings in secondary auditory cortex of non-human primates
Cited by: 23
Author(s): Christopher Heelan, Ji-Hun Lee, Ronan O’Shea, Laurie Lynch, David M. Brandman, Wilson Truccolo, A. V. Nurmikko
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1004838

Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming
Cited by: 51
Author(s): Stephen Gang Wu, Yu-Xuan Wang, Jiang Wu, Tolutola Oyetunde, Ruilian Yao, Xuehong Zhang, Kazuyuki Shimizu, Yinjie J. Tang, Forrest Sheng Bao
Software Mentions: 2
Published: over 8 years ago

10.1186/s12911-019-0978-6

Representation learning in intraoperative vital signs for heart failure risk prediction
Cited by: 12
Author(s): Yuwen Chen, Baolian Qi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0227324

Applications of machine learning in decision analysis for dose management for dofetilide
Cited by: 26
Author(s): Andrew Levy, Minakshi Biswas, Rachel Weber, Khaldoun G. Tarakji, Mina K. Chung, Peter A. Noseworthy, Christopher Newton‐Cheh, Michael Rosenberg
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0199839

Predicting acute kidney injury in cancer patients using heterogeneous and irregular data
Cited by: 24
Author(s): Namyong Park, Eunjeong Kang, Minsu Park, Hajeong Lee, Hee Gyung Kang, Hyung Jin Yoon, Ung Gu Kang
Software Mentions: 2
Published: over 6 years ago

10.1093/jamiaopen/ooaa006

Machine learning for early detection of sepsis: an internal and temporal validation study
Cited by: 44
Author(s): Armando Bedoya, Joseph Futoma, Meredith E. Clement, Kristin Corey, Nathan Brajer, Anthony Lin, Morgan G. Simons, Michael Gao, Marshall Nichols, Suresh Balu, Katherine Heller, Mark Sendak, Cara O’Brien
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02514-2

Moisture modulates soil reservoirs of active DNA and RNA viruses
Cited by: 30
Author(s): Ruonan Wu, Michelle Davison, Yuqian Gao, Carrie Nicora, Jason McDermott, Kristin Burnum-Johnson, Kirsten Hofmockel, Janet K. Jansson
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-020-01559-z

Deep learning identifies partially overlapping subnetworks in the human social brain
Cited by: 10
Author(s): Hannah Kiesow, R. Nathan Spreng, Avram J. Holmes, M. Mallar Chakravarty, André F. Marquand, B.T. Thomas Yeo, Danilo Bzdok
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-020-1079-x

β-amyloid and tau drive early Alzheimer’s disease decline while glucose hypometabolism drives late decline
Cited by: 49
Author(s): Tyler C. Hammond, Xin Xing, Chris Wang, Dávid Ma, Kwangsik Nho, Paul K. Crane, Fanny M. Elahi, David A. Ziegler, Gongbo Liang, Qiang Cheng, Lucille M. Yanckello, Nathan Jacobs, Ai-Ling Lin
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1007396

Ancestral reconstruction of protein interaction networks
Cited by: 12
Author(s): Benjamin J. Liebeskind, Richard W. Aldrich, Edward M. Marcotte
Software Mentions: 2
Published: about 5 years ago

10.1107/S1600576720011103

Density-based clustering of crystal (mis)orientations and the <i>orix</i> Python library
Cited by: 14
Author(s): Duncan N. Johnstone, Baudouin Martineau, Phillip Crout, Paul A. Midgley, Alexander S. Eggeman
Software Mentions: 2
Published: about 4 years ago

10.1186/s40537-021-00488-w

Investigating the impact of pre-processing techniques and pre-trained word embeddings in detecting Arabic health information on social media
Cited by: 19
Author(s): Yahya Albalawi, Jim Buckley, Nikola S. Nikolov
Software Mentions: 2
Published: over 3 years ago

10.1186/s12911-020-01217-8

Evaluation of standard and semantically-augmented distance metrics for neurology patients
Cited by: 5
Author(s): Daniel B. Hier, Jonathan Kopel, Steven U. Brint, Donald C. Wunsch, Gayla R. Olbricht, Sima Azizi, Blaine Allen
Software Mentions: 2
Published: about 4 years ago

Projects: pypi: scikit-learn

Papers Mentioning scikit-learn 2,431