pypi: scikit-learn | Projects | Ecosyste.ms: Papers

10.1186/2047-217X-3-28

How machine learning is shaping cognitive neuroimaging
Cited by: 101
Author(s): Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0096341

Large Roads Reduce Bat Activity across Multiple Species
Cited by: 33
Author(s): Justin Kitzes, Adina M. Merenlender
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1004451

Quantifying Stochastic Noise in Cultured Circadian Reporter Cells
Cited by: 16
Author(s): Peter C. St. John, Francis J. Doyle
Software Mentions: 2
Published: about 9 years ago

Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis
Cited by: 36
Author(s): Vinod Kumar Gupta, Kevin Y. Cunningham, Benjamin Hur, Utpal Bakshi, Harvey Huang, Kenneth J. Warrington, Veena Taneja, Elena Myasoedova, John M. Davis, Jaeyun Sung
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-020-79217-x

Sleep classification from wrist-worn accelerometer data using random forests
Cited by: 40
Author(s): Kalaivani Sundararajan, Sonja Georgievska, Bart H W Te Lindert, Philip Gehrman, Jennifer Ramautar, Diego R. Mazzotti, Séverine Sabia, Michael N. Weedon, Eus J.W. Van Someren, Lars Ridder, Jian Wang, Vincent T. van Hees
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12911-020-01358-w

A stacking-based model for predicting 30-day all-cause hospital readmissions of patients with acute myocardial infarction
Cited by: 12
Author(s): Zhen Zhang, Hang Qiu, Weihao Li, Yu‐Cheng Chen
Software Mentions: 2
Published: almost 4 years ago

10.1245/s10434-020-08659-4

Multiparametric MRI and Whole Slide Image-Based Pretreatment Prediction of Pathological Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer: A Multicenter Radiopathomic Study
Cited by: 32
Author(s): Lizhi Shao, Zhenyu Liu, Lili Feng, Xiaoying Lou, Zhenhui Li, Xiao Yan Zhang, Xiang-Bo Wan, Xuezhi Zhou, Kai Sun, Da Fu Zhang, Lin Wu, Guanyu Yang, Ying Sun, Rui‐hua Xu, Xinjuan Fan, Jie Tian
Software Mentions: 2
Published: over 4 years ago

10.1186/s12911-021-01623-6

Automatic detection of actionable radiology reports using bidirectional encoder representations from transformers
Cited by: 17
Author(s): Yukihiko Nakamura, Shouhei Hanaoka, Yukihiro Nomura, Takahiro Nakao, Soichiro Miki, Takeyuki Watadani, Tsuneo Yoshikawa, Naoto Hayashi, Osamu Abe
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-020-76928-z

Machine learning predicts live-birth occurrence before in-vitro fertilization treatment
Cited by: 25
Author(s): Ashish Goyal, Maheshwar Kuchana, Kameswari Prasada Rao Ayyagari
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-76129-8

Identification of early liver toxicity gene biomarkers using comparative supervised machine learning
Cited by: 11
Author(s): Brandi Patrice Smith, Loretta Auvil, Michael Welge, Colleen Bushell, Rohit Bhargava, Navin Elango, Kamin J. Johnson, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: about 4 years ago

10.1186/s13073-019-0686-y

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
Cited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0207749

Machine learning model combining features from algorithms with different analytical methodologies to detect laboratory-event-related adverse drug reaction signals
Cited by: 23
Author(s): Eugene Jeong, Namgi Park, Young Sik Choi, Rae Woong Park, Dukyong Yoon
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1008587

Four different mechanisms for switching cell polarity
Cited by: 4
Author(s): Filipe Tostevin, Manon Wigbers, Lotte Søgaard‐Andersen, Ulrich Gerland
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0241690

Early screening of autism spectrum disorder using cry features
Cited by: 6
Author(s): Aida Khozaei, Hadi Moradi, Reshad Hosseini, Hamidreza Pouretemad, Bahareh Eskandari
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1004590

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models
Cited by: 20
Author(s): Dmitry Svetlichnyy, Hana Imrichová, Mark Fiers, Zeynep Kalender Atak, Stein Aerts
Software Mentions: 2
Published: about 9 years ago

10.3390/antibiotics8040225

A New Look at the Structures of Old Sepsis Actors by Exploratory Data Analysis Tools
Cited by: 8
Author(s): Antonio Gnoni, Emanuele De Nitto, Salvatore Scacco, Luigì Santacroce, Luigi Leonardo Palese
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-69927-7

Sibling validation of polygenic risk scores and complex trait prediction
Cited by: 21
Author(s): Louis Lello, Timothy G. Raben, Stephen Hsu
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/btx082

Benchmarking substrate-based kinase activity inference using phosphoproteomic data
Cited by: 57
Author(s): Claudia Hernández-Armenta, David Ochoa, Emanuel Gonçalvès, Julio Sáez-Rodríguez, Pedro Beltrão
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0199379

Voxel-based 18F-FET PET segmentation and automatic clustering of tumor voxels: A significant association with IDH1 mutation status and survival in patients with gliomas
Cited by: 18
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Antoine Verger, Karl‐Josef Langen, Vincent Dunet, Jocelyne Bloch, Jean‐Philippe Brouland, Marie Nicod Lalonde, Niklaus Schaefer, John O. Prior
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0254181

Classification of masked image data
Cited by: 1
Author(s): Kamila Lis, Mateusz Koryciński, Konrad A. Ciecierski
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0244636

Automatic classification of mice vocalizations using Machine Learning techniques and Convolutional Neural Networks
Cited by: 14
Author(s): Marika Premoli, Daniele Baggi, Marco Bianchetti, Alessandro Gnutti, Marco Bondaschi, Andrea Mastinu, Pierangelo Migliorati, Alberto Signoroni, Riccardo Leonardi, Maurizio Memo, Sara Anna Bonini
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13073-017-0456-7

Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Cited by: 66
Author(s): Qian Liu, Peng Zhang, Depeng Wang, Wei Gu, Kai Wang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-69848-5

Deep learning on the 2-dimensional Ising model to extract the crossover region with a variational autoencoder
Cited by: 16
Author(s): Nicholas Walker, Ka-Ming Tam, Mark Jarrell
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0242010

Learning from urban form to predict building heights
Cited by: 32
Author(s): Nikola Milojevic-Dupont, Nicolai Hans, Lynn H. Kaack, Marius Zumwald, François Andrieux, Daniel de Barros Soares, Steffen Lohrey, Peter-Paul Pichler, Felix Creutzig
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-68858-7

Inferring disease subtypes from clusters in explanation space
Cited by: 16
Author(s): Marc-André Schulz, Matt Chapman-Rounds, Manisha Verma, Danilo Bzdok, Konstantinos Georgatzis
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-68853-y

Cortical network responses map onto data-driven features that capture visual semantics of movie fragments
Cited by: 6
Author(s): Julia Berezutskaya, Zachary V. Freudenburg, Luca Ambrogioni, Umut Güçlü, Marcel A. J. van Gerven, N.F. Ramsey
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02514-2

Moisture modulates soil reservoirs of active DNA and RNA viruses
Cited by: 30
Author(s): Ruonan Wu, Michelle Davison, Yuqian Gao, Carrie Nicora, Jason McDermott, Kristin Burnum-Johnson, Kirsten Hofmockel, Janet K. Jansson
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-020-01559-z

Deep learning identifies partially overlapping subnetworks in the human social brain
Cited by: 10
Author(s): Hannah Kiesow, R. Nathan Spreng, Avram J. Holmes, M. Mallar Chakravarty, André F. Marquand, B.T. Thomas Yeo, Danilo Bzdok
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-021-02499-5

Biologically relevant transfer learning improves transcription factor binding prediction
Cited by: 21
Author(s): Gherman Novakovsky, Manu Saraswat, Oriol Fornés, Sara Mostafavi, Wyeth W. Wasserman
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008857

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Cited by: 14
Author(s): Josh L. Espinoza, Chris L. Dupont, Aubrie O’Rourke, Sinem Beyhan, Pavel Morales, Amy L. Spoering, Kirsten J. Meyer, Agnes P. Chan, Yongwook Choi, William C. Nierman, Kim Lewis, Karen E. Nelson
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-1079-x

β-amyloid and tau drive early Alzheimer’s disease decline while glucose hypometabolism drives late decline
Cited by: 49
Author(s): Tyler C. Hammond, Xin Xing, Chris Wang, Dávid Ma, Kwangsik Nho, Paul K. Crane, Fanny M. Elahi, David A. Ziegler, Gongbo Liang, Qiang Cheng, Lucille M. Yanckello, Nathan Jacobs, Ai-Ling Lin
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-020-02251-5

Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
Cited by: 26
Author(s): Santiago G. Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini
Software Mentions: 2
Published: almost 4 years ago

10.3390/ani10122201

Comparison of the Surface Thermal Patterns of Horses and Donkeys in Infrared Thermography Images
Cited by: 10
Author(s): Małgorzata Domino, Michał Romaszewski, Tomasz Jasiński, Małgorzata Maśko
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pbio.3000979

A multi-scale cortical wiring space links cellular architecture and functional dynamics in the human brain
Cited by: 61
Author(s): Casey Paquola, Jakob Seidlitz, Oualid Benkarim, Jessica Royer, Petr Klimeš, Richard A. I. Bethlehem, Sara Larivière, Reinder Vos de Wael, Raúl Rodríguez‐Cruces, Jeffery A. Hall, Birgit Frauscher, Jonathan Smallwood, Boris C. Bernhardt
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-020-02065-5

Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
Cited by: 18
Author(s): C. Anthony Scott, Jack D. Duryea, Harry A. Mackay, Maria S. Baker, Eleonora Laritsky, T.D.C.P. Gunasekara, Cristian Coarfa, Robert A. Waterland
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/btz012

A web application and service for imputing and visualizing missense variant effect maps
Cited by: 13
Author(s): Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pbio.3000611

Combining genomics and epidemiology to track mumps virus transmission in the United States
Cited by: 34
Author(s): Shirlee Wohl, Hayden C. Metsky, Stephen F. Schaffner, Anne Piantadosi, Meagan Burns, Joseph A Lewnard, Bridget Chak, Lydia A. Krasilnikova, Katherine J. Siddle, Christian B. Matranga, Bettina Bankamp, Scott Hennigan, Brandon Sabina, Elizabeth H. Byrne, Rebecca J. McNall, Rickey R. Shah, James Qu, Daniel J. Park, Soheyla D. Gharib, Susan Fitzgerald, Paul Barreira, Stephen B. Fleming, Susan M. Lett, Paul A. Rota, Lawrence C. Madoff, Nathan L. Yozwiak, Bronwyn MacInnis, Sandra Smole, Yonatan H. Grad
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00401-020-02171-5

Patient-derived orthotopic xenografts of pediatric brain tumors: a St. Jude resource
Cited by: 38
Author(s): Kyle Smith, Ke Xu, Kimberly Mercer, Frederick A. Boop, Paul Klimo, Michael DeCupyere, José Grenet, Sarah Robinson, Paige S. Dunphy, Suzanne J. Baker, David W. Ellison, Thomas E. Merchant, Santhosh A Upadayaya, Amar Gajjar, Gang Wu, Brent A. Orr, Giles Robinson, Paul A. Northcott, Martine F. Roussel
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/btx601

Sipros Ensemble improves database searching and filtering for complex metaproteomics
Cited by: 21
Author(s): Xuan Guo, Zhou Li, Qiuming Yao, Robert F. Mueller, Jimmy K. Eng, David L. Tabb, IV William Judson Hervey, Chongle Pan
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-019-1776-2

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation
Cited by: 62
Author(s): Channabasavaiah B. Gurumurthy, Aidan O’Brien, Rolen M. Quadros, John Adams, Pilar Alcaide, Shin-ichi Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Ève Beauchamp, Kathleen A. Becker, Guillaume Bernas, David Brough, Francisco Carrillo‐Salinas, Wesley Chan, Hanying Chen, Ruby Dawson, Victoria DeMambro, Jinke D’Hont, Katharine M. Dibb, James D. Eudy, Lin Gan, Jing Gao, Amy Gonzales, Anyonya R. Guntur, Hongqian Guo, Donald W. Harms, Anne Harrington, Kathryn E. Hentges, Neil Humphreys, Shiho Imai, Hideshi Ishii, Mizuho Iwama, Eric Jonasch, Michelle Karolak, Bernard Keavney, Nay Chi Khin, Masamitsu Konno, Yuko Kotani, Yayoi Kunihiro, Imayavaramban Lakshmanan, Catherine Larochelle, Catherine B. Lawrence, Lin Li, Volkhard Lindner, Xian De Liu, Gloria López-Castejón, A. S. I. Loudon, Jenna Lowe, Loydie A. Jerome-Majewska, Taiji Matsusaka, Hiromi Miura, Yoshiki Miyasaka, Benjamin Morpurgo, Katherine J. Motyl, Yo Ichi Nabeshima, Koji Nakade, Toshiaki Nakashiba, Ken‐ichi Nakashima, Yuichi Obata, Sanae Ogiwara, Mario Ouellet, Leif Oxburgh, Sandra Piltz, Ilka Pinz, Moorthy P. Ponnusamy, David Ray, Ronald Redder, Clifford J. Rosen, Nikki Ross, Mark T. Ruhe, Larisa Ryzhova, Ane M. Salvador, Sabrina Alam, Radislav Sedláček, Karan Sharma, Chad Smith, Katrien Staes, Lora Starrs, Fumihiro Sugiyama, Satoru Takahashi, Tomohiro Tanaka, Andrew W. Trafford, Yoshihiro Uno, Leen Vanhoutte, Frederique Vanrockeghem, Brandon Willis, Christian S Wright, Yuko Yamauchi, Xin Yi, Kazuto Yoshimi, Xuesong Zhang, Yu Zhang, Masato Ohtsuka, Satyabrata Das, Daniel J. Garry, Tino Hochepied, Paul Q. Thomas, Jan Parker-Thornburg, Antony Adamson, Atsushi Yoshiki, Jean Francois Schmouth, Андрей Головко, William R. Thompson, Kevin C K Lloyd, Joshua A. Wood, Mitra Cowan, Tomoji Mashimo, Seiya Mizuno, Min Zhu, Petr Kašpárek, Lucy Liaw, Joseph M. Miano, Gaétan Burgio
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-60740-w

Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning
Cited by: 18
Author(s): Shikha Roy, Rakesh Kumar, Vaibhav Mittal, Dinesh Gupta
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2020.00760

EnACP: An Ensemble Learning Model for Identification of Anticancer Peptides
Cited by: 20
Author(s): Ruiquan Ge, Guanwen Feng, Xiaoyang Jing, Renfeng Zhang, Pu Wang, Qing Wu
Software Mentions: 2
Published: over 4 years ago

10.1186/s13062-019-0246-9

Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples
Cited by: 15
Author(s): Carlos S. Casimiro-Soriguer, Carlos Loucera, J. P. Florido, Daniel López-López, Joaquı́n Dopazo
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-017-1189-z

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning
Cited by: 340
Author(s): Christof Angermueller, Heather Lee, Wolf Reik
Software Mentions: 2
Published: over 7 years ago

10.1186/s13062-020-0259-4

Predictability of drug-induced liver injury by machine learning
Cited by: 26
Author(s): Marco Chierici, Margherita Francescatto, Nicole Bussola, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2019.00809

California Almond Yield Prediction at the Orchard Level With a Machine Learning Approach
Cited by: 45
Author(s): Zhou Zhang, Yufang Jin, Бин Чэн, Patrick H. Brown
Software Mentions: 2
Published: over 5 years ago

10.3390/plants9121751

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana
Cited by: 3
Author(s): Yichao Li, Maxwell Mullin, Yingnan Zhang, Frank A. Drews, Lonnie R. Welch, Allan M. Showalter
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2021.690124

Predicting Protein–Protein Interactions Between Rice and Blast Fungus Using Structure-Based Approaches
Cited by: 8
Author(s): Cunjian Zheng, Yuan Liu, Fangnan Sun, Lingxia Zhao, Lida Zhang
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6151651

Utterance Clustering Using Stereo Audio Channels
Cited by: 1
Author(s): Yingjun Dong, Neil G. MacLaren, Yiding Cao, Francis J. Yammarino, Shelley D. Dionne, Michael D. Mumford, Shane Connelly, Hiroki Sayama, Gregory A. Ruark
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-020-59553-8

Essential oils against bacterial isolates from cystic fibrosis patients by means of antimicrobial and unsupervised machine learning approaches
Cited by: 28
Author(s): Rino Ragno, Rosanna Papa, Alexandros Patsilinakos, Gianluca Vrenna, Stefania Garzoli, Vanessa Tuccio Guarna Assanti, E. Fiscarelli, Laura Selan, Marco Artini
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-016-0957-5

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
Cited by: 62
Author(s): Valentina Proserpio, Andrea Piccolo, Liora Haim-Vilmovsky, Gozde Kar, Tapio Lönnberg, Valentine Svensson, Jhuma Pramanik, Kedar Nath Natarajan, Weichao Zhai, Xiuwei Zhang, Giacomo Donati, Melis Kayikci, Jurij Kotar, Andrew N. J. McKenzie, Ruddy Montandon, Oliver Billker, Steven Woodhouse, Pietro Cicuta, Mario Nicodemi, Sarah A. Teichmann
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-021-04272-8

A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns
Cited by: 0
Author(s): Wan Kin Au Yeung, Osamu Maruyama, Hidetada Sasaki
Software Mentions: 2
Published: over 3 years ago

10.1242/bio.036103

Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance
Cited by: 16
Author(s): David Mavor, Kyle Barlow, Daniel Asarnow, Yuliya Birman, Derek Britain, Weilin Chen, Evan M. Green, L.R. Kenner, Bruk Mensa, Leanna S. Morinishi, Charlotte Nelson, Erin M. Poss, Pooja Suresh, Ruilin Tian, Taylor Arhar, Beatrice Ary, Diana Bauer, Ian D. Bergman, Rachel M. Brunetti, Cynthia M. Chio, Shizhong Dai, Miles Sasha Dickinson, Susanna K. Elledge, Cole V. M. Helsell, Nathan L. Hendel, Emily L. Kang, Nadja Kern, Matvei Khoroshkin, Lisa L. Kirkemo, Greyson R. Lewis, Kevin Lou, Wesley M. Marin, Alison Maxwell, Peter F. McTigue, Douglas Myers-Turnbull, Tamas L. Nagy, Andrew M. Natale, Keely Oltion, Sergei Pourmal, Gabriel Reder, Nicholas J. Rettko, Peter J. Rohweder, Daniel M. C. Schwarz, Sophia K. Tan, Paul Thomas, Ryan W. Tibble, Jason P. Town, Mary K. Tsai, Fatima S. Ugur, Douglas R. Wassarman, Alexander M. Wolff, Taia Wu, Derek Bogdanoff, Jennifer Li, Kurt S. Thorn, Shane Ó’Conchúir, Danielle L. Swaney, Eric D. Chow, Hiten Madhani, Sy Redding, Daniel N. Bolon, Tanja Kortemme, Joseph L. DeRisi, Martin Kampmann, James S. Fraser
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2019.01292

Data-Mining Approach on Transcriptomics and Methylomics Placental Analysis Highlights Genes in Fetal Growth Restriction
Cited by: 13
Author(s): Floris Chabrun, Noémie Huetz, Xavier Dieu, Guillaume Rousseau, Guillaume Bouzillé, Juan Manuel Chao de la Barca, Vincent Procaccio, Guy Lenaers, Odile Blanchet, Guillaume Legendre, Delphine Mirebeau‐Prunier, Marc Cuggia, Philippe Guardiola, Pascal Reynier, Géraldine Gascoin
Software Mentions: 2
Published: almost 5 years ago

10.3390/biology9080198

Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models
Cited by: 19
Author(s): Diana V. Urista, Diego B. Carrué, Iago Otero, Sonia Arrasate, Viviana Quevedo-Tumailli, Marcos Gestal, Humberto González-Dı́az, Cristian R. Munteanu
Software Mentions: 2
Published: over 4 years ago

10.1534/genetics.116.195214

Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps
Cited by: 114
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 2
Published: over 7 years ago

10.3390/antibiotics9120861

Comprehensive Statistical Evaluation of Etest®, UMIC®, MicroScan and Disc Diffusion versus Standard Broth Microdilution: Workflow for an Accurate Detection of Colistin-Resistant and Mcr-Positive E. coli
Cited by: 8
Author(s): Isidro García-Meniño, Pilar Lumbreras, Pablo Valledor, Dafne Díaz-Jiménez, Luz Lestón, Javier Fernández, Azucena Mora
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-58804-y

Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma
Cited by: 15
Author(s): Ninadh Malrina D’Costa, Davide P. Cinà, Raunak Shrestha, Robert H. Bell, Yen-Yi Lin, Hossein Asghari, César Monjarás‐Ávila, Christian Kollmannsberger, Faraz Hach, Claudia Chávez-Muñoz, Alan So
Software Mentions: 2
Published: almost 5 years ago

10.1155/2015/136921

Classification of Parkinsonian Syndromes from FDG-PET Brain Data Using Decision Trees with SSM/PCA Features
Cited by: 41
Author(s): Deborah Mudali, Laura K. Teune, Remco Renken, Klaus L. Leenders, Jos B. T. M. Roerdink
Software Mentions: 2
Published: almost 10 years ago

10.3389/fgene.2021.650897

Computational Studies of the Structural Basis of Human RPS19 Mutations Associated With Diamond-Blackfan Anemia
Cited by: 1
Author(s): Ke An, Jingbo Zhou, Yao Xiong, Han Wang, Tao Wang, Zhiqiang Ye, Yun Na Wu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-018-2197-z

Automatic extraction of informal topics from online suicidal ideation
Cited by: 21
Author(s): Reilly N. Grant, David Kucher, Ana M. León, Jonathan Gemmell, Daniela Raicu, Samah Jamal Fodeh
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58467-9

Deep Learning Models for Histopathological Classification of Gastric and Colonic Epithelial Tumours
Cited by: 236
Author(s): Osamu Iizuka, Fahdi Kanavati, Kei Kato, Michael Rambeau, Koji Arihiro, Masayuki Tsuneki
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-57900-3

Single-cell dispensing and ‘real-time’ cell classification using convolutional neural networks for higher efficiency in single-cell cloning
Cited by: 18
Author(s): Julian Riba, Jonas Schoendube, Stefan Zimmermann, Peter Koltay, Roland Zengerle
Software Mentions: 2
Published: almost 5 years ago

10.18632/aging.202168

Plasma cytokines for predicting diabetic retinopathy among type 2 diabetic patients via machine learning algorithms
Cited by: 3
Author(s): Bin Cao, Ning Zhang, Yuanyuan Zhang, Ying Fu, Dong Zhao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-021-03993-0

ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites
Cited by: 1
Author(s): Pengyu Liu, Jiangning Song, Chun Yuan Lin, Tatsuya Akutsu
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/7103647

A CT-Based Radiomics Approach for the Differential Diagnosis of Sarcomatoid and Clear Cell Renal Cell Carcinoma
Cited by: 15
Author(s): Xiaohong Meng, Jing Shu, Yuwei Xia, Ruwu Yang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12920-021-00974-3

EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer
Cited by: 10
Author(s): Leila Mirsadeghi, Reihaneh Hosseini, Ali Mohammad Banaei-Moghaddam, Kaveh Kavousi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-52937-5

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome
Cited by: 29
Author(s): Behrooz Azarkhalili, Alihossein Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.667450

Multi-Omic Analyses Reveal Habitat Adaptation of Marine Cyanobacterium Synechocystis sp. PCC 7338
Cited by: 4
Author(s): Yu‐Jin Jeong, Seong-Joo Hong, Sang-Hyeok Cho, Seongwon Yoon, Hookeun Lee, Hyung‐Kyoon Choi, Dong‐Myung Kim, Choul-Gyun Lee, Suhyung Cho, Byung-Kwan Cho
Software Mentions: 2
Published: over 3 years ago

10.1080/01969722.2018.1556438

Modeling Mentor-Mentee Dialogues in Film
Cited by: 0
Author(s): Anna Dobrosovestnova, Marcin Skowron, Sabine Payr, Robert Trappl
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-016-0895-y

CP-CHARM: segmentation-free image classification made accessible
Cited by: 53
Author(s): Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-51269-8

MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
Cited by: 29
Author(s): Masato Yamabe, Kazumasa Horie, Hiroaki Shiokawa, Hiromasa Funato, Masashi Yanagisawa, Hiroyuki Kitagawa
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/4795140

Machine-Learning Prediction of Oral Drug-Induced Liver Injury (DILI) via Multiple Features and Endpoints
Cited by: 9
Author(s): Xiaobin Liu, Danhua Zheng, Yingying Zhong, Zhaofan Xia, Heng Luo, Zuquan Weng
Software Mentions: 2
Published: over 4 years ago

10.1093/database/bav123

ChemProt-3.0: a global chemical biology diseases mapping
Cited by: 81
Author(s): Jens Vindahl Kringelum, Sonny Kim Kjærulff, Søren Brunak, Ole Lund, Tudor I. Oprea, Olivier Taboureau
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-020-03944-1

PCirc: random forest-based plant circRNA identification software
Cited by: 13
Author(s): Shuwei Yin, Xiao Tian, Jingjing Zhang, Peisen Sun, Guanglin Li
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules25245901

Towards Deep Neural Network Models for the Prediction of the Blood–Brain Barrier Permeability for Diverse Organic Compounds
Cited by: 17
Author(s): Eugene V. Radchenko, Alina S Dyabina, Vladimir A. Palyulin
Software Mentions: 2
Published: almost 4 years ago

10.1093/database/baaa002

GXD’s RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest
Cited by: 2
Author(s): Cyndi M. Smith, James A. Kadin, Richard M. Baldarelli, Jonathan S Beal, Olin Blodgett, Sharon C Giannatto, Joel E. Richardson, Martin Ringwald
Software Mentions: 2
Published: almost 5 years ago

10.3390/antibiotics10040449

Meropenem Stability in Human Plasma at −20 °C: Detailed Assessment of Degradation
Cited by: 6
Author(s): Matthias Gijsen, Benjamin Filtjens, Pieter Annaert, Yeghig Armoudjian, Yves Debaveye, Joost Wauters, Peter Slaets, Isabel Spriet
Software Mentions: 2
Published: over 3 years ago

10.1093/database/baab017

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning
Cited by: 16
Author(s): Eryk Kropiwnicki, John Erol Evangelista, Daniel J. Stein, Daniel J. B. Clarke, Alexander Lachmann, Maxim V. Kuleshov, Minji Jeon, Kathleen M. Jagodnik, Avi Ma’ayan
Software Mentions: 2
Published: almost 4 years ago

10.1093/database/baaa050

mAML: an automated machine learning pipeline with a microbiome repository for human disease classification
Cited by: 18
Author(s): Fenglong Yang, Quan Zou
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-019-0515-6

CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancer
Cited by: 5
Author(s): Sungjoon Park, Dae Hyun Hwang, Yoon Sun Yeo, Hyunggee Kim, Jaewoo Kang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-016-1205-4

Fusing literature and full network data improves disease similarity computation
Cited by: 18
Author(s): Ping Li, Yaling Nie, Jing Yu
Software Mentions: 2
Published: about 8 years ago

10.1186/s13000-021-01126-y

Normalization of HE-stained histological images using cycle consistent generative adversarial networks
Cited by: 16
Author(s): Marlen Runz, Daniel Rusche, S. Schmidt, Martin R. Weihrauch, Jürgen Hesser, Cleo–Aron Weis
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-51526-w

Local redox conditions in cells imaged via non-fluorescent transient states of NAD(P)H
Cited by: 8
Author(s): Johan Tornmalm, Elin Sandberg, Mihailo D. Rabasović, Jerker Widengren
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/8450656

An Immune-Related Gene Panel for Preoperative Lymph Node Status Evaluation in Advanced Gastric Cancer
Cited by: 5
Author(s): Yuan Yang, Ya Zheng, Hongling Zhang, Yifei Miao, Gongjin Wu, Lingshan Zhou, Haoying Wang, Rui Ji, Qinghong Guo, Zhaofeng Chen, Jiangtao Wang, Yuping Wang, Yongning Zhou
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-49118-9

A novel metabarcoding diagnostic tool to explore protozoan haemoparasite diversity in mammals: a proof-of-concept study using canines from the tropics
Cited by: 26
Author(s): Lucas G. Huggins, Anson V. Koehler, Dinh Ng-Nguyen, Stephen Wilcox, Bettina Schunack, Tawin Inpankaew, Rebecca J. Traub
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-020-3474-1

ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces
Cited by: 3
Author(s): Felippe C. Queiroz, Adriana Maria Patarroyo Vargas, M. G. A. Oliveira, Giovanni Comarela, Simonton Andrade Silveira
Software Mentions: 2
Published: over 4 years ago

10.3390/ma14071747

Design and Additive Manufacturing of Porous Sound Absorbers—A Machine-Learning Approach
Cited by: 15
Author(s): Sebastian Kuschmitz, Tobias P. Ring, Hagen Watschke, Sabine Langer, Thomas Vietor
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-48913-8

Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals
Cited by: 6
Author(s): Yoshinori Fukasawa, Kentaro Tomii
Software Mentions: 2
Published: about 5 years ago

10.3390/diagnostics11081508

Deep Learning Analysis of In Vivo Hyperspectral Images for Automated Intraoperative Nerve Detection
Cited by: 13
Author(s): Manuel Barberio, Toby Collins, Valentin Bencteux, Richard Nkusi, Eric Felli, Massimo Viola, Jacques Marescaux, Alexandre Hostettler, Michele Diana
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-48571-w

A hierarchy of environmental covariates control the global biogeography of soil bacterial richness
Cited by: 14
Author(s): Samuel Bickel, Xi Chen, Andreas Papritz, Dani Or
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj-cs.270

A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data
Cited by: 44
Author(s): Reinel Tabares-Soto, Simón Orozco-Arias, Víctor Romero-Cano, Vanesa Segovia Bucheli, José Luis Rodríguez-Sotelo, Cristian Felipe Jiménez Varón
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-48273-3

Link clustering explains non-central and contextually essential genes in protein interaction networks
Cited by: 2
Author(s): Inhae Kim, Heetak Lee, Kwanghwan Lee, Seong Kyu Han, Donghyo Kim, Sanguk Kim
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26154678

CYPstrate: A Set of Machine Learning Models for the Accurate Classification of Cytochrome P450 Enzyme Substrates and Non-Substrates
Cited by: 4
Author(s): Malte Holmer, Christina de Bruyn Kops, Conrad Stork, Johannes Kirchmair
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-019-2939-6

Prediction of activity and specificity of CRISPR-Cpf1 using convolutional deep learning neural networks
Cited by: 28
Author(s): Jiesi Luo, Wei Chen, Xue Li, Bin Tang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00242

Machine Learning on Human Muscle Transcriptomic Data for Biomarker Discovery and Tissue-Specific Drug Target Identification
Cited by: 128
Author(s): Polina Mamoshina, Marina Volosnikova, Ivan V. Ozerov, Evgeny Putin, Ekaterina Skibina, Filomeno Cortese, Alex Zhavoronkov
Software Mentions: 2
Published: over 6 years ago

10.1242/dmm.044560

Sentinel Interaction Mapping (SIM) – A generic approach for the functional analysis of human disease gene variants using yeast
Cited by: 4
Author(s): Barry P. Young, Kathryn Post, Jesse T. Chao, Fabian Meili, Kurt Haas, Christopher Loewen
Software Mentions: 2
Published: almost 5 years ago

10.1017/dmp.2021.65

Topic Analysis of Traditional and Social Media News Coverage of the Early COVID-19 Pandemic and Implications for Public Health Communication
Cited by: 18
Author(s): Wallace Chipidza, Elmira Akbaripourdibazar, Tendai Gwanzura, Nicole M. Gatto
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-47484-y

Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids
Cited by: 20
Author(s): Visa Suomi, Gaber Komar, Teija Sainio, Kirsi Joronen, Antti Perheentupa, Roberto Blanco Sequeiros
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-45333-6

EEG Decoding Reveals the Strength and Temporal Dynamics of Goal-Relevant Representations
Cited by: 31
Author(s): Jason Hubbard, Atsushi Kikumoto, Ulrich Mayr
Software Mentions: 2
Published: over 5 years ago

Projects: pypi: scikit-learn

Papers Mentioning scikit-learn 2,431