Projects: pypi: scikit-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn
A set of python modules for machine learning and data mining
72 versions
Latest release: about 3 years ago
5,918 dependent packages
43,777,417 downloads last month
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a.joly@ulg.ac.be
vanderplas@astro.washington.edu
bh00038@cvplws63.eps.surrey.ac.uk
ha258@cornell.edu
satra@mit.edu
zl2480@columbia.edu
pinto@alum.mit.edu
jz4721@nyu.edu
matteo.visconti.gr@dartmouth.edu
vighneshbirodkar@nyu.edu
robert.l.marchman@dartmouth.edu
rs2715@stern.nyu.edu
claire.savard@colorado.edu
aaaagrawal@iitb.ac.in
ihaque@cs.stanford.edu
rspeer@mit.edu
mluessi@nmr.mgh.harvard.edu
amitibo@tx.technion.ac.il
ericchang2017@u.northwestern.edu
jkarno@seas.upenn.edu
minghui.liu@trincoll.edu
m.lyra@sussex.ac.uk
andrew.knyazev@ucdenver.edu
lamb@cs.stanford.edu
camilo@neurostat.mit.edu
martino.sorbaro@ed.ac.uk
t.sheerman-chase@surrey.ac.uk
cgohlke@uci.edu
batulaa@drexel.edu
kcarnold@alum.mit.edu
apw@seas.harvard.edu
abie@alum.mit.edu
rossbar@berkeley.edu
alceballosa@unal.edu.co
fhoang7@berkeley.edu
hechen@seas.upenn.edu
stefan@sun.ac.za
deepyaman.datta@utexas.edu
rebekah.kim@columbia.edu
shubham.bhardwaj2015@vit.ac.in
slama@berkeley.edu
nisingh@wharton.upenn.edu
kanikas3@vt.edu
jdlabal@stanford.edu
kjells@uw.edu
markus.loning.17@ucl.ac.uk
k_nzw@klis.tsukuba.ac.jp
dkirkby@uci.edu
balawson@bu.edu
c.brummitt@columbia.edu
choo8@illinois.edu
giorgio.patrini@anu.edu.au
shangwuy@andrew.cmu.edu
rafael.possas@sydney.edu.au
olsonran@msu.edu
brian.mcfee@nyu.edu
naj273@nyu.edu
dgrusak@trinity.edu
emd222@cornell.edu
voth0@sewanee.edu
trishnendu.dd2014@cs.iiests.ac.in
apeng@berkeley.edu
boucher@cs.umass.edu
lunt@ctbp.ucsd.edu
bakhbari@mgh.harvard.edu
piraka@brandeis.edu
neal.lathia@cl.cam.ac.uk
razhoshia@post.bgu.ac.il
michal.romaniuk06@ic.ac.uk
m.batchkarov@sussex.ac.uk
lemin@cs.colostate.edu
rudvlf0413@korea.ac.kr
vredev16@msu.edu
raschkas@msu.edu
ali.baharev@univie.ac.at
a.krasoulis@sms.ed.ac.uk
arokem@berkeley.edu
gabrielvr@al.insper.edu.br
eric.sanchez1234@email.bakersfieldcollege.edu
fcchou@stanford.edu
rofuyu@cs.utexas.edu
glemaitre@visor.udg.edu
naoyaiijima@hiroshima-u.ac.jp
ayushgup@iitk.ac.in
joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au
jam7w2@mail.missouri.edu
j.hale09@imperial.ac.uk
tw991@nyu.edu
patel_zeel@iitgn.ac.in
vincent.lostanlen@nyu.edu
stvjc@channing.harvard.edu
ritchieng@u.nus.edu
bansalsi@usc.edu
rbarnes@umn.edu
rrohan@cs.cmu.edu
liutong.zhou@columbia.edu
mdh386@nyu.edu
mlf419@nyu.edu
shreyave@usc.edu
jin.siy@northeastern.edu
samuel_ainsworth@brown.edu
cwijes1@lsu.edu
wadawson@ucdavis.edu
xinyuliu@umich.edu
rz258@cornell.edu
daniel.mallia21@myhunter.cuny.edu
argriffi@ncsu.edu
filipj@umich.edu
kms15@case.edu
sam.dixon@berkeley.edu
khong008@e.ntu.edu.sg
jnelso11@gmu.edu
jclawton@umich.edu
jaehyunahn@sogang.ac.kr
ijpulidos@unal.edu.co
gstupp@scripps.edu
justhube@umich.edu
noamkeidar@campus.technion.ac.il
nityamd@nyu.edu
css459@nyu.edu
alyee@ucsd.edu
andersk@mit.edu
dhanus@mit.edu
coreylevinson@uchicago.edu
cailean.carter@quadram.ac.uk
bral4884@colorado.edu
dschult@colgate.edu
dpwe@ee.columbia.edu
dylan.cashman@tufts.edu
pawelsendyk@berkeley.edu
qzhang90@gatech.edu
mhaberla@calpoly.edu
saketk@student.unimelb.edu.au
eunjikim@dm.snu.ac.kr
erinrhof@uw.edu
ksivaman@purdue.edu
garmstrong@ucsd.edu
konstantin.shmelkov@polytechnique.edu
e175774@ie.u-ryukyu.ac.jp
hermidal@cs.umd.edu
jbearer@hmc.edu
jmarin@csail.mit.edu
Repository Activity:
Repository Owner:
scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+2840
Educational commit emails
142 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
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PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning scikit-learn 2,431
10.1038/s41598-020-61180-2
Combined behavioral and electrophysiological evidence for a direct cortical effect of prefrontal tDCS on disorders of consciousnessCited by: 50
Author(s): Bertrand Hermann, Federico Raimondo, Lukas Hirsch, Yu Huang, Mélanie Denis-Valente, Pauline Pérez, Denis A. Engemann, Frédéric Faugeras, Nicolas Weiss, Sophie Demeret, Benjamin Rohaut, Lucas C. Parra, Jacobo Sitt, Lionel Naccache
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-020-59988-z
A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibilityCited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: over 6 years ago
10.3390/brainsci10120949
A Review of Machine Learning Methods of Feature Selection and Classification for Autism Spectrum DisorderCited by: 54
Author(s): Md. Mokhlesur Rahman, Opeyemi Lateef Usman, Ravie Chandren Muniyandi, Shahnorbanun Sahran, Suziyani Mohamed, Rogayah A. Razak
Software Mentions: 3
Published: almost 6 years ago
10.2196/12783
Tweet Classification Toward Twitter-Based Disease Surveillance: New Data, Methods, and EvaluationsCited by: 23
Author(s): Shoko Wakamiya, Mizuki Morita, Yoshinobu Kano, Tomoko Ohkuma, Eiji Aramaki
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-56527-3
Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical DataCited by: 123
Author(s): Aleksei Tiulpin, Stefan Klein, Sita M A Bierma-Zeinstra, Jérôme Thevenot, Esa Rahtu, Joyce B. J. van Meurs, Edwin H.G. Oei, Simo Saarakkala
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12885-021-08276-8
Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancerCited by: 6
Author(s): Yichao Li, Sushila Jaiswal, Rupleen Kaur, Dana Alsaadi, Xiaoyu Liang, Frank A. Drews, Julie A. DeLoia, Thomas C. Krivak, Hanna M. Petrykowska, Valer Gotea, Lonnie R. Welch, Laura Elnitski
Software Mentions: 3
Published: over 5 years ago
10.3390/molecules24142610
Local Interaction Density (LID), a Fast and Efficient Tool to Prioritize Docking PosesCited by: 4
Author(s): Célien Jacquemard, Viet-Khoa Tran-Nguyen, Malgorzata N. Drwal, Didier Rognan, Esther Kellenberger
Software Mentions: 3
Published: over 7 years ago
10.1098/rsos.181806
Accurate wisdom of the crowd from unsupervised dimension reductionCited by: 1
Author(s): Lingfei Wang, Tom Michoel
Software Mentions: 3
Published: over 7 years ago
10.1186/2047-217X-3-28
How machine learning is shaping cognitive neuroimagingCited by: 101
Author(s): Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: almost 12 years ago
10.1107/S2059798320009080
Predicting protein model correctness in <i>Coot</i> using machine learningCited by: 17
Author(s): Paul S. Bond, K.S. Wilson, Kevin Cowtan
Software Mentions: 2
Published: over 6 years ago
10.1107/S2059798319009392
Sequence assignment for low-resolution modelling of protein crystal structuresCited by: 22
Author(s): Grzegorz Chojnowski, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 7 years ago
10.1007/s00401-020-02171-5
Patient-derived orthotopic xenografts of pediatric brain tumors: a St. Jude resourceCited by: 38
Author(s): Kyle Smith, Ke Xu, Kimberly Mercer, Frederick A. Boop, Paul Klimo, Michael DeCupyere, José Grenet, Sarah Robinson, Paige S. Dunphy, Suzanne J. Baker, David W. Ellison, Thomas E. Merchant, Santhosh A Upadayaya, Amar Gajjar, Gang Wu, Brent A. Orr, Giles Robinson, Paul A. Northcott, Martine F. Roussel
Software Mentions: 2
Published: over 6 years ago
10.18632/aging.202168
Plasma cytokines for predicting diabetic retinopathy among type 2 diabetic patients via machine learning algorithmsCited by: 3
Author(s): Bin Cao, Ning Zhang, Yuanyuan Zhang, Ying Fu, Dong Zhao
Software Mentions: 2
Published: almost 6 years ago
10.1186/s42523-021-00075-7
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic regionCited by: 33
Author(s): Jie Wang, Alexander Jaramillo-Torres, Yanxian Li, Trond M. Kortner, Karina Gajardo, Øyvind Jakobsen Brevik, Jan Vidar Jakobsen, Åshild Krogdahl
Software Mentions: 2
Published: almost 6 years ago
10.3390/ani10122201
Comparison of the Surface Thermal Patterns of Horses and Donkeys in Infrared Thermography ImagesCited by: 10
Author(s): Małgorzata Domino, Michał Romaszewski, Tomasz Jasiński, Małgorzata Maśko
Software Mentions: 2
Published: almost 6 years ago
10.1245/s10434-020-08659-4
Multiparametric MRI and Whole Slide Image-Based Pretreatment Prediction of Pathological Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer: A Multicenter Radiopathomic StudyCited by: 32
Author(s): Lizhi Shao, Zhenyu Liu, Lili Feng, Xiaoying Lou, Zhenhui Li, Xiao Yan Zhang, Xiang-Bo Wan, Xuezhi Zhou, Kai Sun, Da Fu Zhang, Lin Wu, Guanyu Yang, Ying Sun, Rui‐hua Xu, Xinjuan Fan, Jie Tian
Software Mentions: 2
Published: over 6 years ago
10.3390/antibiotics8040225
A New Look at the Structures of Old Sepsis Actors by Exploratory Data Analysis ToolsCited by: 8
Author(s): Antonio Gnoni, Emanuele De Nitto, Salvatore Scacco, Luigì Santacroce, Luigi Leonardo Palese
Software Mentions: 2
Published: almost 7 years ago
10.3390/antibiotics9120861
Comprehensive Statistical Evaluation of Etest®, UMIC®, MicroScan and Disc Diffusion versus Standard Broth Microdilution: Workflow for an Accurate Detection of Colistin-Resistant and Mcr-Positive E. coliCited by: 8
Author(s): Isidro García-Meniño, Pilar Lumbreras, Pablo Valledor, Dafne Díaz-Jiménez, Luz Lestón, Javier Fernández, Azucena Mora
Software Mentions: 2
Published: almost 6 years ago
10.3390/antibiotics10040449
Meropenem Stability in Human Plasma at −20 °C: Detailed Assessment of DegradationCited by: 6
Author(s): Matthias Gijsen, Benjamin Filtjens, Pieter Annaert, Yeghig Armoudjian, Yves Debaveye, Joost Wauters, Peter Slaets, Isabel Spriet
Software Mentions: 2
Published: over 5 years ago
10.1186/s12859-020-3505-y
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomesCited by: 3
Author(s): Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence T. Yang, Jaehyung Kim
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-019-2853-y
Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learningCited by: 23
Author(s): Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Saoko Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-016-1205-4
Fusing literature and full network data improves disease similarity computationCited by: 18
Author(s): Ping Li, Yaling Nie, Jing Yu
Software Mentions: 2
Published: about 10 years ago
10.1186/s12859-020-03915-6
Modeling drug mechanism of action with large scale gene-expression profiles using GPAR, an artificial intelligence platformCited by: 18
Author(s): Shengqiao Gao, Lu Han, Dan Luo, Gang Liu, Zhiyong Xiao, Guangcun Shan, Yongxiang Zhang, Wenxia Zhou
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-021-04096-6
Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing dataCited by: 1
Author(s): Trevor S. Frisby, Shawn James Baker, Guillaume Marçais, Quang Minh Hoang, Carl Kingsford, Christopher J. Langmead
Software Mentions: 2
Published: over 5 years ago
10.1186/s12859-019-2939-6
Prediction of activity and specificity of CRISPR-Cpf1 using convolutional deep learning neural networksCited by: 28
Author(s): Jiesi Luo, Wei Chen, Xue Li, Bin Tang
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-021-03993-0
ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sitesCited by: 1
Author(s): Pengyu Liu, Jiangning Song, Chun Yuan Lin, Tatsuya Akutsu
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-019-3010-3
nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation dataCited by: 22
Author(s): Paul Müller, Shada Abuhattum, Stephanie Möllmert, Elke Ulbricht, Anna Taubenberger, Jochen Guck
Software Mentions: 2
Published: about 7 years ago
10.1186/s12859-019-2833-2
MetaNN: accurate classification of host phenotypes from metagenomic data using neural networksCited by: 42
Author(s): Chieh Lo, Radu Mărculescu
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-019-3238-y
Old drug repositioning and new drug discovery through similarity learning from drug-target joint feature spacesCited by: 9
Author(s): Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Xiaoying Gao, Jinyan Li
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-019-3050-8
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selectionCited by: 46
Author(s): Alejandro Lopez-Rincon, Marlet Martínez‐Archundia, Gustavo Ulises Martínez-Ruiz, Alexander Schoenhuth, Alberto Tonda
Software Mentions: 2
Published: about 7 years ago
10.1186/s12859-020-3437-6
Identification of early mild cognitive impairment using multi-modal data and graph convolutional networksCited by: 17
Author(s): Jin Liu, Guanxin Tan, Wei Lan, Jianxin Wang
Software Mentions: 2
Published: about 6 years ago
10.1186/s12859-019-3054-4
Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selectionCited by: 21
Author(s): Jinhong Shi, Yan Yan, Matthew G. Links, Longhai Li, Jo-Anne R. Dillon, Michael C. Horsch, Anthony Kusalik
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-019-3296-1
Evolving knowledge graph similarity for supervised learning in complex biomedical domainsCited by: 24
Author(s): Rita Sousa, Sara Silva, Cátia Pesquita
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-019-3068-y
A machine learning-based service for estimating quality of genomes using PATRICCited by: 24
Author(s): Bruce Parrello, Rory Butler, Philippe Chlenski, Robert Olson, Jamie C. Overbeek, Gordon D. Pusch, Veronika Vonstein, Ross Overbeek
Software Mentions: 2
Published: about 7 years ago
10.1186/s12859-018-2021-9
LocText: relation extraction of protein localizations to assist database curationCited by: 80
Author(s): Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12859-020-03581-8
AllesTM: predicting multiple structural features of transmembrane proteinsCited by: 3
Author(s): Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-018-2197-z
Automatic extraction of informal topics from online suicidal ideationCited by: 21
Author(s): Reilly N. Grant, David Kucher, Ana M. León, Jonathan Gemmell, Daniela Raicu, Samah Jamal Fodeh
Software Mentions: 2
Published: over 8 years ago
10.1186/s12859-016-0895-y
CP-CHARM: segmentation-free image classification made accessibleCited by: 53
Author(s): Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12859-018-2082-9
DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strainsCited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 8 years ago
10.1186/s12859-017-1729-2
RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkersCited by: 16
Author(s): Nicola Lazzarini, Jaume Bacardit
Software Mentions: 2
Published: over 9 years ago
10.1186/s12859-021-04270-w
PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasetsCited by: 21
Author(s): Léa Pradier, Tazzio Tissot, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2105-15-93
SPiCE: a web-based tool for sequence-based protein classification and explorationCited by: 16
Author(s): Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder
Software Mentions: 2
Published: over 12 years ago
10.1186/s12859-020-03603-5
A cell-level quality control workflow for high-throughput image analysisCited by: 3
Author(s): Minhua Qiu, Bin Zhou, Frederick Lo, Steven C. Cook, Jason Chyba, Doug Quackenbush, Jason Matzen, Zhizhong Li, Puiying A. Mak, Kaisheng Chen, Yingyao Zhou
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-021-04272-8
A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patternsCited by: 0
Author(s): Wan Kin Au Yeung, Osamu Maruyama, Hidetada Sasaki
Software Mentions: 2
Published: over 5 years ago
10.1186/s12859-020-03944-1
PCirc: random forest-based plant circRNA identification softwareCited by: 13
Author(s): Shuwei Yin, Xiao Tian, Jingjing Zhang, Peisen Sun, Guanglin Li
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-018-2535-1
Sequence-based bacterial small RNAs prediction using ensemble learning strategiesCited by: 14
Author(s): Guifeng Tang, Jingwen Shi, Wenjian Wu, Xiang Yue, Wen Zhang
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12859-020-3474-1
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfacesCited by: 3
Author(s): Felippe C. Queiroz, Adriana Maria Patarroyo Vargas, M. G. A. Oliveira, Giovanni Comarela, Simonton Andrade Silveira
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-015-0518-z
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysisCited by: 15
Author(s): Emna Harigua‐Souiai, Isidro Cortés-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michaël Nilges, Arnaud Blondel, Guillaume Bouvier
Software Mentions: 2
Published: over 11 years ago
10.1186/s12859-018-2390-0
Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous networkCited by: 24
Author(s): Lei Deng, Junqiang Wang, Yun Xiao, Zixiang Wang, Hui Liu
Software Mentions: 2
Published: about 8 years ago
10.1186/s12862-019-1552-7
tRNA functional signatures classify plastids as late-branching cyanobacteriaCited by: 4
Author(s): Travis J Lawrence, Katherine C. H. Amrine, Wesley D. Swingley, David H. Ardell
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-015-1264-3
Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case studyCited by: 15
Author(s): John A. Capra
Software Mentions: 2
Published: over 11 years ago
10.1186/s12864-019-6293-x
Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiationCited by: 15
Author(s): Hao Chun Chang, Hsuan Cheng Huang, Hsueh Fen Juan, Chia‐Lang Hsu
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-019-6153-8
Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing dataCited by: 3
Author(s): Raúl Y. Wijfjes, Sandra Smit, Dick de Ridder
Software Mentions: 2
Published: about 7 years ago
10.1186/s12864-020-06978-0
ACEP: improving antimicrobial peptides recognition through automatic feature fusion and amino acid embeddingCited by: 23
Author(s): Hongtuo Fu, Zicheng Cao, Mingyuan Li, Shunfang Wang
Software Mentions: 2
Published: about 6 years ago
10.1186/s12879-021-06038-2
Projecting COVID-19 disease severity in cancer patients using purposefully-designed machine learningCited by: 4
Author(s): Saket Navlakha, Sejal Morjaria, Rocío Pérez-Johnston, Allen Zhang, Ying Taur
Software Mentions: 2
Published: over 5 years ago
10.1186/s12920-019-0515-6
CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancerCited by: 5
Author(s): Sungjoon Park, Dae Hyun Hwang, Yoon Sun Yeo, Hyunggee Kim, Jaewoo Kang
Software Mentions: 2
Published: over 7 years ago
10.1186/s12920-021-00974-3
EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancerCited by: 10
Author(s): Leila Mirsadeghi, Reihaneh Hosseini, Ali Mohammad Banaei-Moghaddam, Kaveh Kavousi
Software Mentions: 2
Published: over 5 years ago
10.1186/s12911-021-01623-6
Automatic detection of actionable radiology reports using bidirectional encoder representations from transformersCited by: 17
Author(s): Yukihiko Nakamura, Shouhei Hanaoka, Yukihiro Nomura, Takahiro Nakao, Soichiro Miki, Takeyuki Watadani, Tsuneo Yoshikawa, Naoto Hayashi, Osamu Abe
Software Mentions: 2
Published: about 5 years ago
10.1186/s12911-020-01358-w
A stacking-based model for predicting 30-day all-cause hospital readmissions of patients with acute myocardial infarctionCited by: 12
Author(s): Zhen Zhang, Hang Qiu, Weihao Li, Yu‐Cheng Chen
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12911-020-01217-8
Evaluation of standard and semantically-augmented distance metrics for neurology patientsCited by: 5
Author(s): Daniel B. Hier, Jonathan Kopel, Steven U. Brint, Donald C. Wunsch, Gayla R. Olbricht, Sima Azizi, Blaine Allen
Software Mentions: 2
Published: about 6 years ago
10.1186/s12911-019-0978-6
Representation learning in intraoperative vital signs for heart failure risk predictionCited by: 12
Author(s): Yuwen Chen, Baolian Qi
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12911-020-1104-5
How to automatically turn patient experience free-text responses into actionable insights: a natural language programming (NLP) approachCited by: 14
Author(s): Simone A. Cammel, Marit S. de Vos, Daphne van Soest, Kristina Hettne, F. Boer, Ewout W. Steyerberg, Hileen Boosman
Software Mentions: 2
Published: over 6 years ago
10.1186/s12911-019-0841-9
Automatically determining cause of death from verbal autopsy narrativesCited by: 13
Author(s): Serena Jeblee, Mireille Gomes, Prabhat Jha, Frank Rudzicz, Graeme Hirst
Software Mentions: 2
Published: over 7 years ago
10.1186/s12911-018-0710-y
Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictabilityCited by: 30
Author(s): Telma Pereira, Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12911-021-01510-0
Explainable AI enables clinical trial patient selection to retrospectively improve treatment effects in schizophreniaCited by: 3
Author(s): Monika S. Mellem, Matthew Kollada, Jane Tiller, Thomas Z. Lauritzen
Software Mentions: 2
Published: over 5 years ago
10.1186/s12911-020-01356-y
Explanation and prediction of clinical data with imbalanced class distribution based on pattern discovery and disentanglementCited by: 9
Author(s): Pei-Yuan Zhou, Andrew K. C. Wong
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12911-020-01329-1
Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosisCited by: 13
Author(s): Bin Ma, Zhaolong Wu, Shengyu Li, Ryan Benton, Dongqi Li, Yulong Huang, Mohan Vamsi Kasukurthi, Jingwei Lin, Glen M. Borchert, Shaobo Tan, Gang Li, Meihong Yang, Jingshan Huang
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12911-020-1069-4
Sparse multi-output Gaussian processes for online medical time series predictionCited by: 23
Author(s): Li Cheng, Bianca Dumitrascu, Gregory Darnell, Corey Chivers, Michael Draugelis, Kai Li, Barbara E. Engelhardt
Software Mentions: 2
Published: over 6 years ago
10.1186/s13104-015-1039-6
A property-based analysis of human transcription factorsCited by: 7
Author(s): Shahram Bahrami, Rezvan Ehsani, Finn Drabløs
Software Mentions: 2
Published: over 11 years ago
10.1186/s12918-018-0587-5
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosaCited by: 35
Author(s): Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand V. Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 8 years ago
10.1186/s13040-021-00270-x
Comparison of 16S and whole genome dog microbiomes using machine learningCited by: 3
Author(s): Scott A. Lewis, Andrea K. Nash, Qinghong Li, Tae-Hyuk Ahn
Software Mentions: 2
Published: about 5 years ago
10.1186/s13040-017-0154-4
PMLB: a large benchmark suite for machine learning evaluation and comparisonCited by: 217
Author(s): Randal S. Olson, William La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore
Software Mentions: 2
Published: almost 9 years ago
10.3390/bioengineering8060074
Modeling Focused-Ultrasound Response for Non-Invasive Treatment Using Machine LearningCited by: 3
Author(s): Tariq M. Arif, Zhiming Ji, Md Adilur Rahim, Bharath Babu Nunna
Software Mentions: 2
Published: over 5 years ago
10.1093/bioinformatics/bty915
wgd—simple command line tools for the analysis of ancient whole-genome duplicationsCited by: 148
Author(s): Arthur Zwaenepoel, Yves Van de Peer
Software Mentions: 2
Published: about 8 years ago
10.1093/bioinformatics/bty565
Statistical tests for detecting variance effects in quantitative trait studiesCited by: 24
Author(s): Bianca Dumitrascu, Gregory Darnell, Julien Ayroles, Barbara E. Engelhardt
Software Mentions: 2
Published: over 8 years ago
10.1093/bioinformatics/btx082
Benchmarking substrate-based kinase activity inference using phosphoproteomic dataCited by: 57
Author(s): Claudia Hernández-Armenta, David Ochoa, Emanuel Gonçalvès, Julio Sáez-Rodríguez, Pedro Beltrão
Software Mentions: 2
Published: over 9 years ago
10.1093/bioinformatics/btz012
A web application and service for imputing and visualizing missense variant effect mapsCited by: 13
Author(s): Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth
Software Mentions: 2
Published: almost 8 years ago
10.1093/bioinformatics/btx601
Sipros Ensemble improves database searching and filtering for complex metaproteomicsCited by: 21
Author(s): Xuan Guo, Zhou Li, Qiuming Yao, Robert F. Mueller, Jimmy K. Eng, David L. Tabb, IV William Judson Hervey, Chongle Pan
Software Mentions: 2
Published: about 9 years ago
10.1186/s13062-019-0246-9
Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samplesCited by: 15
Author(s): Carlos S. Casimiro-Soriguer, Carlos Loucera, J. P. Florido, Daniel López-López, Joaquı́n Dopazo
Software Mentions: 2
Published: about 7 years ago
10.1186/s13062-020-0259-4
Predictability of drug-induced liver injury by machine learningCited by: 26
Author(s): Marco Chierici, Margherita Francescatto, Nicole Bussola, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 2
Published: over 6 years ago
10.1242/bio.036103
Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence toleranceCited by: 16
Author(s): David Mavor, Kyle Barlow, Daniel Asarnow, Yuliya Birman, Derek Britain, Weilin Chen, Evan M. Green, L.R. Kenner, Bruk Mensa, Leanna S. Morinishi, Charlotte Nelson, Erin M. Poss, Pooja Suresh, Ruilin Tian, Taylor Arhar, Beatrice Ary, Diana Bauer, Ian D. Bergman, Rachel M. Brunetti, Cynthia M. Chio, Shizhong Dai, Miles Sasha Dickinson, Susanna K. Elledge, Cole V. M. Helsell, Nathan L. Hendel, Emily L. Kang, Nadja Kern, Matvei Khoroshkin, Lisa L. Kirkemo, Greyson R. Lewis, Kevin Lou, Wesley M. Marin, Alison Maxwell, Peter F. McTigue, Douglas Myers-Turnbull, Tamas L. Nagy, Andrew M. Natale, Keely Oltion, Sergei Pourmal, Gabriel Reder, Nicholas J. Rettko, Peter J. Rohweder, Daniel M. C. Schwarz, Sophia K. Tan, Paul Thomas, Ryan W. Tibble, Jason P. Town, Mary K. Tsai, Fatima S. Ugur, Douglas R. Wassarman, Alexander M. Wolff, Taia Wu, Derek Bogdanoff, Jennifer Li, Kurt S. Thorn, Shane Ó’Conchúir, Danielle L. Swaney, Eric D. Chow, Hiten Madhani, Sy Redding, Daniel N. Bolon, Tanja Kortemme, Joseph L. DeRisi, Martin Kampmann, James S. Fraser
Software Mentions: 2
Published: over 8 years ago
10.3390/biology9080198
Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest ModelsCited by: 19
Author(s): Diana V. Urista, Diego B. Carrué, Iago Otero, Sonia Arrasate, Viviana Quevedo-Tumailli, Marcos Gestal, Humberto González-Dı́az, Cristian R. Munteanu
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/7103647
A CT-Based Radiomics Approach for the Differential Diagnosis of Sarcomatoid and Clear Cell Renal Cell CarcinomaCited by: 15
Author(s): Xiaohong Meng, Jing Shu, Yuwei Xia, Ruwu Yang
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/4795140
Machine-Learning Prediction of Oral Drug-Induced Liver Injury (DILI) via Multiple Features and EndpointsCited by: 9
Author(s): Xiaobin Liu, Danhua Zheng, Yingying Zhong, Zhaofan Xia, Heng Luo, Zuquan Weng
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/8450656
An Immune-Related Gene Panel for Preoperative Lymph Node Status Evaluation in Advanced Gastric CancerCited by: 5
Author(s): Yuan Yang, Ya Zheng, Hongling Zhang, Yifei Miao, Gongjin Wu, Lingshan Zhou, Haoying Wang, Rui Ji, Qinghong Guo, Zhaofeng Chen, Jiangtao Wang, Yuping Wang, Yongning Zhou
Software Mentions: 2
Published: almost 6 years ago
10.3390/biom9020043
NP-Scout: Machine Learning Approach for the Quantification and Visualization of the Natural Product-Likeness of Small MoleculesCited by: 43
Author(s): Chen Ya, Conrad Stork, Steffen Hirte, Johannes Kirchmair
Software Mentions: 2
Published: almost 8 years ago
10.3390/biom11091337
Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding ResiduesCited by: 1
Author(s): Ruiyang Song, Baixin Cao, Zhenling Peng, Christopher J. Oldfield, Lukasz Kurgan, Ka-Chun Wong, Jianyi Yang
Software Mentions: 2
Published: about 5 years ago
10.3390/biom10101460
Predicting Deep Learning Based Multi-Omics Parallel Integration Survival Subtypes in Lung Cancer Using Reverse Phase Protein Array DataCited by: 33
Author(s): Satoshi Takahashi, Ken Asada, Ken Takasawa, Ryo Shimoyama, Akira Sakai, Amina Bolatkan, Norio Shinkai, Kazuma Kobayashi, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Software Mentions: 2
Published: about 6 years ago
10.1016/j.bpj.2020.04.032
Protein-Folding Analysis Using Features Obtained by Persistent HomologyCited by: 12
Author(s): Takashi Ichinomiya, Ippei Obayashi, Yasuaki Hiraoka
Software Mentions: 2
Published: over 6 years ago
10.1038/s41408-020-0322-5
Combining gene expression profiling and machine learning to diagnose B-cell non-Hodgkin lymphomaCited by: 19
Author(s): Victor Bobée, Fanny Drieux, Vinciane Marchand, Vincent Sater, Liana Veresezan, Jean‐Michel Picquenot, Pierre‐Julien Viailly, Marie‐Delphine Lanic, Mathieu Viennot, Élodie Bohers, Lucie Obéric, Christiane Copie‐Bergman, Thierry Jo Molina, Philippe Gaulard, Corinne Haı̈oun, Gilles Salles, Hervé Tilly, Fabrice Jardin, Philippe Ruminy
Software Mentions: 2
Published: over 6 years ago
10.1093/braincomms/fcaa202
Biomarkers of memory variability in traumatic brain injuryCited by: 5
Author(s): Richard Adamovich‐Zeitlin, Paul A. Wanda, Ethan A. Solomon, Tung D. Phan, Bradley Lega, Barbara C. Jobst, Robert E. Gross, Kan Ding, Ramon Diaz‐Arrastia, Michael J. Kahana
Software Mentions: 2
Published: almost 6 years ago
10.3390/brainsci11081049
Using Machine Learning Algorithms for Identifying Gait Parameters Suitable to Evaluate Subtle Changes in Gait in People with Multiple SclerosisCited by: 9
Author(s): Katrin Trentzsch, Paula Schumann, Grzegorz Śliwiński, Paul Bartscht, Rocco Haase, Dirk Schriefer, Andreas Zink, Andreas Heinke, Thurid Jochim, Hagen Malberg, Tjalf Ziemssen
Software Mentions: 2
Published: over 5 years ago
10.3390/brainsci11040521
Differentiating Real-World Autobiographical Experiences without Recourse to BehaviourCited by: 0
Author(s): Jonathan Erez, Mélanie Gagnon, Adrian M. Owen
Software Mentions: 2
Published: over 5 years ago
10.3390/brainsci10050319
Logistic Regression Algorithm Differentiates Gulf War Illness (GWI) Functional Magnetic Resonance Imaging (fMRI) Data from a Sedentary ControlCited by: 4
Author(s): Destie Provenzano, Stuart D. Washington, Yuan James Rao, Murray H. Loew, James N. Baraniuk
Software Mentions: 2
Published: over 6 years ago
10.36834/cmej.69289
Fundamental trends within falling match rates: insights from the past decade of Canadian residency matching dataCited by: 3
Author(s): Andy G.X. Zeng, Connor T. A. Brenna, Silvio Ndoja
Software Mentions: 2
Published: over 6 years ago
10.1186/s40170-020-0211-1
Common biochemical properties of metabolic genes recurrently dysregulated in tumorsCited by: 9
Author(s): Krishnadev Oruganty, Scott Campit, Sainath Mamde, Costas A. Lyssiotis, Sriram Chandrasekaran
Software Mentions: 2
Published: over 6 years ago
10.1007/s00227-018-3318-y
Development and application of a machine learning algorithm for classification of elasmobranch behaviour from accelerometry dataCited by: 66
Author(s): Lauran R. Brewster, Jonathan J. Dale, T. L. Guttridge, Samuel H. Gruber, Alexander C. Hansell, Michael Elliott, I. G. Cowx, Nicholas M. Whitney, Adrian C. Gleiss
Software Mentions: 2
Published: over 8 years ago
10.3390/ma14071747
Design and Additive Manufacturing of Porous Sound Absorbers—A Machine-Learning ApproachCited by: 15
Author(s): Sebastian Kuschmitz, Tobias P. Ring, Hagen Watschke, Sabine Langer, Thomas Vietor
Software Mentions: 2
Published: over 5 years ago
10.3390/metabo10060237
QSRR Automator: A Tool for Automating Retention Time Prediction in Lipidomics and MetabolomicsCited by: 27
Author(s): Bradley C. Naylor, J. Leon Catrow, J. Alan Maschek, James E. Cox
Software Mentions: 2
Published: over 6 years ago
10.1186/s40168-020-00990-y
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA virusesCited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 6 years ago