Projects: pypi: scikit-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn
A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month
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a.joly@ulg.ac.be
vanderplas@astro.washington.edu
bh00038@cvplws63.eps.surrey.ac.uk
ha258@cornell.edu
satra@mit.edu
zl2480@columbia.edu
pinto@alum.mit.edu
jz4721@nyu.edu
matteo.visconti.gr@dartmouth.edu
vighneshbirodkar@nyu.edu
robert.l.marchman@dartmouth.edu
rs2715@stern.nyu.edu
claire.savard@colorado.edu
aaaagrawal@iitb.ac.in
ihaque@cs.stanford.edu
rspeer@mit.edu
mluessi@nmr.mgh.harvard.edu
amitibo@tx.technion.ac.il
ericchang2017@u.northwestern.edu
jkarno@seas.upenn.edu
minghui.liu@trincoll.edu
m.lyra@sussex.ac.uk
andrew.knyazev@ucdenver.edu
lamb@cs.stanford.edu
camilo@neurostat.mit.edu
martino.sorbaro@ed.ac.uk
t.sheerman-chase@surrey.ac.uk
cgohlke@uci.edu
batulaa@drexel.edu
kcarnold@alum.mit.edu
apw@seas.harvard.edu
abie@alum.mit.edu
rossbar@berkeley.edu
alceballosa@unal.edu.co
fhoang7@berkeley.edu
hechen@seas.upenn.edu
stefan@sun.ac.za
deepyaman.datta@utexas.edu
rebekah.kim@columbia.edu
shubham.bhardwaj2015@vit.ac.in
slama@berkeley.edu
nisingh@wharton.upenn.edu
kanikas3@vt.edu
jdlabal@stanford.edu
kjells@uw.edu
markus.loning.17@ucl.ac.uk
k_nzw@klis.tsukuba.ac.jp
dkirkby@uci.edu
balawson@bu.edu
c.brummitt@columbia.edu
choo8@illinois.edu
giorgio.patrini@anu.edu.au
shangwuy@andrew.cmu.edu
rafael.possas@sydney.edu.au
olsonran@msu.edu
brian.mcfee@nyu.edu
naj273@nyu.edu
dgrusak@trinity.edu
emd222@cornell.edu
voth0@sewanee.edu
trishnendu.dd2014@cs.iiests.ac.in
apeng@berkeley.edu
boucher@cs.umass.edu
lunt@ctbp.ucsd.edu
bakhbari@mgh.harvard.edu
piraka@brandeis.edu
neal.lathia@cl.cam.ac.uk
razhoshia@post.bgu.ac.il
michal.romaniuk06@ic.ac.uk
m.batchkarov@sussex.ac.uk
lemin@cs.colostate.edu
rudvlf0413@korea.ac.kr
vredev16@msu.edu
raschkas@msu.edu
ali.baharev@univie.ac.at
a.krasoulis@sms.ed.ac.uk
arokem@berkeley.edu
gabrielvr@al.insper.edu.br
eric.sanchez1234@email.bakersfieldcollege.edu
fcchou@stanford.edu
rofuyu@cs.utexas.edu
glemaitre@visor.udg.edu
naoyaiijima@hiroshima-u.ac.jp
ayushgup@iitk.ac.in
joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au
jam7w2@mail.missouri.edu
j.hale09@imperial.ac.uk
tw991@nyu.edu
patel_zeel@iitgn.ac.in
vincent.lostanlen@nyu.edu
stvjc@channing.harvard.edu
ritchieng@u.nus.edu
bansalsi@usc.edu
rbarnes@umn.edu
rrohan@cs.cmu.edu
liutong.zhou@columbia.edu
mdh386@nyu.edu
mlf419@nyu.edu
shreyave@usc.edu
jin.siy@northeastern.edu
samuel_ainsworth@brown.edu
cwijes1@lsu.edu
wadawson@ucdavis.edu
xinyuliu@umich.edu
rz258@cornell.edu
daniel.mallia21@myhunter.cuny.edu
argriffi@ncsu.edu
filipj@umich.edu
kms15@case.edu
sam.dixon@berkeley.edu
khong008@e.ntu.edu.sg
jnelso11@gmu.edu
jclawton@umich.edu
jaehyunahn@sogang.ac.kr
ijpulidos@unal.edu.co
gstupp@scripps.edu
justhube@umich.edu
noamkeidar@campus.technion.ac.il
nityamd@nyu.edu
css459@nyu.edu
alyee@ucsd.edu
andersk@mit.edu
dhanus@mit.edu
coreylevinson@uchicago.edu
cailean.carter@quadram.ac.uk
bral4884@colorado.edu
dschult@colgate.edu
dpwe@ee.columbia.edu
dylan.cashman@tufts.edu
pawelsendyk@berkeley.edu
qzhang90@gatech.edu
mhaberla@calpoly.edu
saketk@student.unimelb.edu.au
eunjikim@dm.snu.ac.kr
erinrhof@uw.edu
ksivaman@purdue.edu
garmstrong@ucsd.edu
konstantin.shmelkov@polytechnique.edu
e175774@ie.u-ryukyu.ac.jp
hermidal@cs.umd.edu
jbearer@hmc.edu
jmarin@csail.mit.edu
Repository Activity:
Repository Owner:
scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+2840
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142 contributors with educational email addresses -
+20
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Repository owned by academic institution -
+15
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Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
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PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning scikit-learn 2,431
10.1007/s11695-021-05277-1
Predictors of Postprandial Hypoglycemia After Gastric Bypass Surgery: a Retrospective Case-Control StudyCited by: 3
Author(s): Elric Zweck, Matthias Hepprich, Marc Y. Donath
Software Mentions: 3
Published: over 4 years ago
10.1038/s41388-020-01614-3
Comprehensive characterisation of intronic mis-splicing mutations in human cancersCited by: 20
Author(s): Hyunchul Jung, Kang Seon Lee, Jung Kyoon Choi
Software Mentions: 3
Published: almost 5 years ago
10.7554/eLife.50469
Temporal chunking as a mechanism for unsupervised learning of task-setsCited by: 14
Author(s): Flora Bouchacourt, Stefano Palminteri, Etienne Koechlin, Srdjan Ostojic
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.52707
The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapiesCited by: 19
Author(s): Jennifer E. L. Diaz, Mehmet Eren Ahsen, Thomas Schaffter, Xintong Chen, Ronald Realubit, Charles Karan, Andrea Califano, Bojan Losic, Gustavo Stolovitzky
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.46935
Deep generative models for T cell receptor protein sequencesCited by: 57
Author(s): Kristian Davidsen, Branden J Olson, William S DeWitt, Jean Feng, Elias Harkins, Philip Bradley, F. A. Matsen
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.54055
Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkersCited by: 60
Author(s): Denis A. Engemann, Oleh Kozynets, David Sabbagh, G Lemaître, Gaël Varoquaux, Franziskus Liem, Alexandre Gramfort
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.56890
Diverse homeostatic and immunomodulatory roles of immune cells in the developing mouse lung at single cell resolutionCited by: 27
Author(s): Racquel Domingo-Gonzalez, Fabio Zanini, Xibing Che, Min Liu, Robert C. Jones, Michael Swift, Stephen R. Quake, David N. Cornfield, Cristina M. Alvira
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.51975
Elements of a stochastic 3D prediction engine in larval zebrafish prey captureCited by: 28
Author(s): Andrew D. Bolton, Martin Haesemeyer, Josua Jordi, Ulrich Schaechtle, Feras A. Saad, Vikash K. Mansinghka, Joshua B. Tenenbaum, Florian Engert
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12918-018-0587-5
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosaCited by: 35
Author(s): Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand V. Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-58804-y
Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinomaCited by: 15
Author(s): Ninadh Malrina D’Costa, Davide P. Cinà, Raunak Shrestha, Robert H. Bell, Yen-Yi Lin, Hossein Asghari, César Monjarás‐Ávila, Christian Kollmannsberger, Faraz Hach, Claudia Chávez-Muñoz, Alan So
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-59553-8
Essential oils against bacterial isolates from cystic fibrosis patients by means of antimicrobial and unsupervised machine learning approachesCited by: 28
Author(s): Rino Ragno, Rosanna Papa, Alexandros Patsilinakos, Gianluca Vrenna, Stefania Garzoli, Vanessa Tuccio Guarna Assanti, E. Fiscarelli, Laura Selan, Marco Artini
Software Mentions: 2
Published: over 5 years ago
10.3389/fchem.2019.00315
Ligand Binding Induces Agonistic-Like Conformational Adaptations in Helix 12 of Progesterone Receptor Ligand Binding DomainCited by: 5
Author(s): Lihe Zheng, Kelin Xia, Yuguang Mu
Software Mentions: 2
Published: over 6 years ago
10.1093/ve/veaa106
Tuning intrinsic disorder predictors for virus proteinsCited by: 3
Author(s): Gal Almog, Abayomi S Olabode, Art F. Y. Poon
Software Mentions: 2
Published: almost 5 years ago
10.1534/g3.116.038448
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in FungiCited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-60740-w
Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learningCited by: 18
Author(s): Shikha Roy, Rakesh Kumar, Vaibhav Mittal, Dinesh Gupta
Software Mentions: 2
Published: over 5 years ago
10.1245/s10434-020-08659-4
Multiparametric MRI and Whole Slide Image-Based Pretreatment Prediction of Pathological Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer: A Multicenter Radiopathomic StudyCited by: 32
Author(s): Lizhi Shao, Zhenyu Liu, Lili Feng, Xiaoying Lou, Zhenhui Li, Xiao Yan Zhang, Xiang-Bo Wan, Xuezhi Zhou, Kai Sun, Da Fu Zhang, Lin Wu, Guanyu Yang, Ying Sun, Rui‐hua Xu, Xinjuan Fan, Jie Tian
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers13133106
SurvCNN: A Discrete Time-to-Event Cancer Survival Estimation Framework Using Image Representations of Omics DataCited by: 1
Author(s): Yogesh Kalakoti, Shashank Yadav, Durai Sundar
Software Mentions: 2
Published: over 4 years ago
10.3389/fchem.2019.00035
e-Sweet: A Machine-Learning Based Platform for the Prediction of Sweetener and Its Relative SweetnessCited by: 23
Author(s): Suqing Zheng, Wenping Chang, Wenxin Xu, Yong Xu, Lin Fu
Software Mentions: 2
Published: almost 7 years ago
10.1155/2020/8450656
An Immune-Related Gene Panel for Preoperative Lymph Node Status Evaluation in Advanced Gastric CancerCited by: 5
Author(s): Yuan Yang, Ya Zheng, Hongling Zhang, Yifei Miao, Gongjin Wu, Lingshan Zhou, Haoying Wang, Rui Ji, Qinghong Guo, Zhaofeng Chen, Jiangtao Wang, Yuping Wang, Yongning Zhou
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers11111751
The Performance of Different Artificial Intelligence Models in Predicting Breast Cancer among Individuals Having Type 2 Diabetes MellitusCited by: 7
Author(s): Meng-Hsuen Hsieh, Li‐Min Sun, Cheng‐Li Lin, Meng-Ju Hsieh, Chung Y. Hsu, Chia Hung Kao
Software Mentions: 2
Published: about 6 years ago
10.1007/s00401-020-02171-5
Patient-derived orthotopic xenografts of pediatric brain tumors: a St. Jude resourceCited by: 38
Author(s): Kyle Smith, Ke Xu, Kimberly Mercer, Frederick A. Boop, Paul Klimo, Michael DeCupyere, José Grenet, Sarah Robinson, Paige S. Dunphy, Suzanne J. Baker, David W. Ellison, Thomas E. Merchant, Santhosh A Upadayaya, Amar Gajjar, Gang Wu, Brent A. Orr, Giles Robinson, Paul A. Northcott, Martine F. Roussel
Software Mentions: 2
Published: over 5 years ago
10.3389/fchem.2019.00899
Vienna LiverTox Workspace—A Set of Machine Learning Models for Prediction of Interactions Profiles of Small Molecules With Transporters Relevant for Regulatory AgenciesCited by: 14
Author(s): Floriane Montanari, Bernhard Knasmüller, Stefan Michael Kohlbacher, Christoph Hillisch, Christine Baierová, Melanie Grandits, Gerhard Ecker
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-020-03603-5
A cell-level quality control workflow for high-throughput image analysisCited by: 3
Author(s): Minhua Qiu, Bin Zhou, Frederick Lo, Steven C. Cook, Jason Chyba, Doug Quackenbush, Jason Matzen, Zhizhong Li, Puiying A. Mak, Kaisheng Chen, Yingyao Zhou
Software Mentions: 2
Published: over 5 years ago
10.3390/genes9100478
An Improved Method for Prediction of Cancer Prognosis by Network LearningCited by: 32
Author(s): Min‐Seon Kim, Ilhwan Oh, Jaegyoon Ahn
Software Mentions: 2
Published: about 7 years ago
10.1186/s13104-015-1039-6
A property-based analysis of human transcription factorsCited by: 7
Author(s): Shahram Bahrami, Rezvan Ehsani, Finn Drabløs
Software Mentions: 2
Published: over 10 years ago
10.3389/fninf.2018.00055
Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network ConnectivityCited by: 15
Author(s): Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva, Vince D. Calhoun
Software Mentions: 2
Published: about 7 years ago
10.1093/infdis/jiy427
Genome-Wide Sequence Analysis of Kaposi Sarcoma-Associated Herpesvirus Shows Diversification Driven by RecombinationCited by: 26
Author(s): Neneh Sallah, Anne L. Palser, Simon J. Watson, Nazzarena Labò, Gershim Asiki, Vickie Marshall, Robert Newton, Paul Kellam, Inês Barroso
Software Mentions: 2
Published: over 7 years ago
10.3389/fchem.2019.00211
The Effect of Cofactor Binding on the Conformational Plasticity of the Biological Receptors in Artificial Metalloenzymes: The Case Study of LmrRCited by: 9
Author(s): Lur Alonso‐Cotchico, Jaime Rodríguez-Guerra Pedregal, Agustı́ Lledós, Jean‐Didier Maréchal
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/4795140
Machine-Learning Prediction of Oral Drug-Induced Liver Injury (DILI) via Multiple Features and EndpointsCited by: 9
Author(s): Xiaobin Liu, Danhua Zheng, Yingying Zhong, Zhaofan Xia, Heng Luo, Zuquan Weng
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0223137
Classification of neurons in the adult mouse cochlear nucleus: Linear discriminant analysisCited by: 9
Author(s): Paul B. Manis, Michael R. Kasten, Ruili Xie
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0241686
Evaluation of classification and forecasting methods on time series gene expression dataCited by: 3
Author(s): Nafis Irtiza Tripto, M. R. Kabir, Md. Shamsuzzoha Bayzid, Atif Rahman
Software Mentions: 2
Published: about 5 years ago
10.1007/s10895-020-02635-7
A Novel Dual Antibody Staining Assay to Measure Estrogen Receptor Transcriptional ActivityCited by: 1
Author(s): Freek van Hemert, Christa Dam-de Veen, Sil Konings, John van der Ven, Anja van de Stolpe
Software Mentions: 2
Published: almost 5 years ago
10.1534/genetics.116.195214
Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype MapsCited by: 114
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0199089
Feature selection for the accurate prediction of septic and cardiogenic shock ICU mortality in the acute phaseCited by: 22
Author(s): Alexander Aushev, Vicent Ribas Ripoll, Alfredo Vellido, Federico Aletti, Bernardo Bollen Pinto, Antoine Herpain, Emiel Hendrik Post, Eduardo Romay Medina, Ricard Ferrer, Giuseppe Baselli, Karim Bendjelid
Software Mentions: 2
Published: almost 7 years ago
10.1186/s13059-016-0957-5
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferationCited by: 62
Author(s): Valentina Proserpio, Andrea Piccolo, Liora Haim-Vilmovsky, Gozde Kar, Tapio Lönnberg, Valentine Svensson, Jhuma Pramanik, Kedar Nath Natarajan, Weichao Zhai, Xiuwei Zhang, Giacomo Donati, Melis Kayikci, Jurij Kotar, Andrew N. J. McKenzie, Ruddy Montandon, Oliver Billker, Steven Woodhouse, Pietro Cicuta, Mario Nicodemi, Sarah A. Teichmann
Software Mentions: 2
Published: over 9 years ago
10.1155/2020/7103647
A CT-Based Radiomics Approach for the Differential Diagnosis of Sarcomatoid and Clear Cell Renal Cell CarcinomaCited by: 15
Author(s): Xiaohong Meng, Jing Shu, Yuwei Xia, Ruwu Yang
Software Mentions: 2
Published: over 5 years ago
10.2196/publichealth.8950
Accurate Influenza Monitoring and Forecasting Using Novel Internet Data Streams: A Case Study in the Boston MetropolisCited by: 83
Author(s): Fred Lu, Suqin Hou, Kristin Baltrusaitis, Manan Shah, Jure Leskovec, Rok Sosič, Joseph E. Hawkins, John S. Brownstein, Giuseppe Conidi, Julia Gunn, Josh Gray, Anna Zink, Mauricio Santillana
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-020-68853-y
Cortical network responses map onto data-driven features that capture visual semantics of movie fragmentsCited by: 6
Author(s): Julia Berezutskaya, Zachary V. Freudenburg, Luca Ambrogioni, Umut Güçlü, Marcel A. J. van Gerven, N.F. Ramsey
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-017-1189-z
DeepCpG: accurate prediction of single-cell DNA methylation states using deep learningCited by: 340
Author(s): Christof Angermueller, Heather Lee, Wolf Reik
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0253851
Persistent homology as a new method of the assessment of heart rate variabilityCited by: 6
Author(s): Grzegorz Graff, Beata Graff, Paweł Pilarczyk, Grzegorz Jabłoński, Dariusz Gąsecki, Krzysztof Narkiewicz
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0176486
A novel framework for the identification of drug target proteins: Combining stacked auto-encoders with a biased support vector machineCited by: 25
Author(s): Qi Wang, Yanghe Feng, Jincai Huang, Tengjiao Wang, Guangquan Cheng
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-68858-7
Inferring disease subtypes from clusters in explanation spaceCited by: 16
Author(s): Marc-André Schulz, Matt Chapman-Rounds, Manisha Verma, Danilo Bzdok, Konstantinos Georgatzis
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-69848-5
Deep learning on the 2-dimensional Ising model to extract the crossover region with a variational autoencoderCited by: 16
Author(s): Nicholas Walker, Ka-Ming Tam, Mark Jarrell
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-69927-7
Sibling validation of polygenic risk scores and complex trait predictionCited by: 21
Author(s): Louis Lello, Timothy G. Raben, Stephen Hsu
Software Mentions: 2
Published: over 5 years ago
10.3389/fneur.2021.670944
A Set of Eight Key Questions Helps to Classify Common Vestibular Disorders—Results From the DizzyReg Patient RegistryCited by: 7
Author(s): Ralf Strobl, Michael Grözinger, Andreas Zwergal, Doreen Huppert, Filipp Filippopulos, Eva Grill
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0207749
Machine learning model combining features from algorithms with different analytical methodologies to detect laboratory-event-related adverse drug reaction signalsCited by: 23
Author(s): Eugene Jeong, Namgi Park, Young Sik Choi, Rae Woong Park, Dukyong Yoon
Software Mentions: 2
Published: almost 7 years ago
10.3389/fncom.2019.00039
On the Sparse Structure of Natural Sounds and Natural Images: Similarities, Differences, and Implications for Neural CodingCited by: 4
Author(s): Eric McVoy Dodds, Michael R. DeWeese
Software Mentions: 2
Published: over 6 years ago
10.3390/ijerph16152666
Comparisons among Machine Learning Models for the Prediction of Hypercholestrolemia Associated with Exposure to Lead, Mercury, and CadmiumCited by: 7
Author(s): Hyejin Park, Kisok Kim
Software Mentions: 2
Published: over 6 years ago
10.1186/s12911-020-1069-4
Sparse multi-output Gaussian processes for online medical time series predictionCited by: 23
Author(s): Li Cheng, Bianca Dumitrascu, Gregory Darnell, Corey Chivers, Michael Draugelis, Kai Li, Barbara E. Engelhardt
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-019-1776-2
Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluationCited by: 62
Author(s): Channabasavaiah B. Gurumurthy, Aidan O’Brien, Rolen M. Quadros, John Adams, Pilar Alcaide, Shin-ichi Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Ève Beauchamp, Kathleen A. Becker, Guillaume Bernas, David Brough, Francisco Carrillo‐Salinas, Wesley Chan, Hanying Chen, Ruby Dawson, Victoria DeMambro, Jinke D’Hont, Katharine M. Dibb, James D. Eudy, Lin Gan, Jing Gao, Amy Gonzales, Anyonya R. Guntur, Hongqian Guo, Donald W. Harms, Anne Harrington, Kathryn E. Hentges, Neil Humphreys, Shiho Imai, Hideshi Ishii, Mizuho Iwama, Eric Jonasch, Michelle Karolak, Bernard Keavney, Nay Chi Khin, Masamitsu Konno, Yuko Kotani, Yayoi Kunihiro, Imayavaramban Lakshmanan, Catherine Larochelle, Catherine B. Lawrence, Lin Li, Volkhard Lindner, Xian De Liu, Gloria López-Castejón, A. S. I. Loudon, Jenna Lowe, Loydie A. Jerome-Majewska, Taiji Matsusaka, Hiromi Miura, Yoshiki Miyasaka, Benjamin Morpurgo, Katherine J. Motyl, Yo Ichi Nabeshima, Koji Nakade, Toshiaki Nakashiba, Ken‐ichi Nakashima, Yuichi Obata, Sanae Ogiwara, Mario Ouellet, Leif Oxburgh, Sandra Piltz, Ilka Pinz, Moorthy P. Ponnusamy, David Ray, Ronald Redder, Clifford J. Rosen, Nikki Ross, Mark T. Ruhe, Larisa Ryzhova, Ane M. Salvador, Sabrina Alam, Radislav Sedláček, Karan Sharma, Chad Smith, Katrien Staes, Lora Starrs, Fumihiro Sugiyama, Satoru Takahashi, Tomohiro Tanaka, Andrew W. Trafford, Yoshihiro Uno, Leen Vanhoutte, Frederique Vanrockeghem, Brandon Willis, Christian S Wright, Yuko Yamauchi, Xin Yi, Kazuto Yoshimi, Xuesong Zhang, Yu Zhang, Masato Ohtsuka, Satyabrata Das, Daniel J. Garry, Tino Hochepied, Paul Q. Thomas, Jan Parker-Thornburg, Antony Adamson, Atsushi Yoshiki, Jean Francois Schmouth, Андрей Головко, William R. Thompson, Kevin C K Lloyd, Joshua A. Wood, Mitra Cowan, Tomoji Mashimo, Seiya Mizuno, Min Zhu, Petr Kašpárek, Lucy Liaw, Joseph M. Miano, Gaétan Burgio
Software Mentions: 2
Published: about 6 years ago
10.3389/fneur.2020.00007
Prediction of Vestibular Dysfunction by Applying Machine Learning Algorithms to Postural InstabilityCited by: 19
Author(s): Teru Kamogashira, Chisato Fujimoto, Makoto Kinoshita, Yuichiro Kikkawa, Tatsuya Yamasoba, Shinichi Iwasaki
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.26066
Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotesCited by: 38
Author(s): Sébastien Colin, Luís Pedro Coelho, Shinichi Sunagawa, Chris Bowler, Eric Karsenti, Peer Bork, Rainer Pepperkok, Colomban de Vargas
Software Mentions: 2
Published: about 8 years ago
10.1016/j.celrep.2021.109566
Synchronization patterns reveal neuronal coding of working memory contentCited by: 11
Author(s): Fahimeh Mamashli, Sheraz Khan, Matti S. Hämäläinen, Mainak Jas, Tommi Raij, Steven M. Stufflebeam, Aapo Nummenmaa, Jyrki Ahveninen
Software Mentions: 2
Published: over 4 years ago
10.3389/fneur.2020.00886
Multi-Dimensional, Short-Timescale Quantification of Parkinson's Disease and Essential Tremor Motor DysfunctionCited by: 5
Author(s): John Sanderson, James Yu, David D. Liu, Daniel E Amaya, Peter M Lauro, Anelyssa D’Abreu, Umer Akbar, Shane Lee, Wael F. Asaad
Software Mentions: 2
Published: about 5 years ago
10.1186/s12911-020-01329-1
Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosisCited by: 13
Author(s): Bin Ma, Zhaolong Wu, Shengyu Li, Ryan Benton, Dongqi Li, Yulong Huang, Mohan Vamsi Kasukurthi, Jingwei Lin, Glen M. Borchert, Shaobo Tan, Gang Li, Meihong Yang, Jingshan Huang
Software Mentions: 2
Published: almost 5 years ago
10.1186/s40168-020-00990-y
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA virusesCited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 5 years ago
10.7554/eLife.43803
Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-SeqCited by: 212
Author(s): Dylan Kotliar, Adrian Veres, Martina Nagy, Shervin Tabrizi, Eran Hodis, Douglas A. Melton, Pardis C. Sabeti
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-15-93
SPiCE: a web-based tool for sequence-based protein classification and explorationCited by: 16
Author(s): Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0230136
BRAF V600E mutational load as a prognosis biomarker in malignant melanomaCited by: 9
Author(s): Arrate Sevilla, María–Celia Morales, Pilar Ariadna Ezkurra, Javier Rasero, Verónica Velasco, Goikoane Cancho-Galan, Ana Sánchez-Díez, Karmele Mujika, Cristina Penas, Isabel Smith, Aintzane Asumendi, Jesús M. Cortés, María Dolores Boyano, Santos Alonso
Software Mentions: 2
Published: over 5 years ago
10.1016/j.wroa.2021.100093
Predictive water virology using regularized regression analyses for projecting virus inactivation efficiency in ozone disinfectionCited by: 9
Author(s): Syun suke Kadoya, Osamu Nishimura, Hiroyuki Kato, Daisuke Sano
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-76129-8
Identification of early liver toxicity gene biomarkers using comparative supervised machine learningCited by: 11
Author(s): Brandi Patrice Smith, Loretta Auvil, Michael Welge, Colleen Bushell, Rohit Bhargava, Navin Elango, Kamin J. Johnson, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: about 5 years ago
10.3389/fneur.2019.00996
The Pragmatic Classification of Upper Extremity Motion in Neurological Patients: A PrimerCited by: 8
Author(s): Avinash Parnandi, Jasim Uddin, Dawn Nilsen, Heidi M. Schambra
Software Mentions: 2
Published: about 6 years ago
10.1186/s12859-021-04270-w
PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasetsCited by: 21
Author(s): Léa Pradier, Tazzio Tissot, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme
Software Mentions: 2
Published: over 4 years ago
10.1016/j.celrep.2020.02.094
Machine Learning Uncovers Food- and Excipient-Drug InteractionsCited by: 34
Author(s): Daniel Reker, Yulei Shi, Ameya R. Kirtane, Kaitlyn Hess, Grace Zhong, Evan Crane, Chin‐Feng Lin, Robert Langer, Giovanni Traverso
Software Mentions: 2
Published: over 5 years ago
10.3389/fneur.2019.00655
Quantifying the Confidence in fMRI-Based Language Lateralisation Through Laterality Index DeconstructionCited by: 7
Author(s): Martin Wegrzyn, Markus Mertens, Christian G. Bien, Friedrich G. Woermann, Kirsten Labudda
Software Mentions: 2
Published: over 6 years ago
10.1186/s42523-021-00075-7
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic regionCited by: 33
Author(s): Jie Wang, Alexander Jaramillo-Torres, Yanxian Li, Trond M. Kortner, Karina Gajardo, Øyvind Jakobsen Brevik, Jan Vidar Jakobsen, Åshild Krogdahl
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0241690
Early screening of autism spectrum disorder using cry featuresCited by: 6
Author(s): Aida Khozaei, Hadi Moradi, Reshad Hosseini, Hamidreza Pouretemad, Bahareh Eskandari
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13059-020-02065-5
Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing dataCited by: 18
Author(s): C. Anthony Scott, Jack D. Duryea, Harry A. Mackay, Maria S. Baker, Eleonora Laritsky, T.D.C.P. Gunasekara, Cristian Coarfa, Robert A. Waterland
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-76928-z
Machine learning predicts live-birth occurrence before in-vitro fertilization treatmentCited by: 25
Author(s): Ashish Goyal, Maheshwar Kuchana, Kameswari Prasada Rao Ayyagari
Software Mentions: 2
Published: almost 5 years ago
10.1186/s40170-020-0211-1
Common biochemical properties of metabolic genes recurrently dysregulated in tumorsCited by: 9
Author(s): Krishnadev Oruganty, Scott Campit, Sainath Mamde, Costas A. Lyssiotis, Sriram Chandrasekaran
Software Mentions: 2
Published: over 5 years ago
10.3390/metabo10060237
QSRR Automator: A Tool for Automating Retention Time Prediction in Lipidomics and MetabolomicsCited by: 27
Author(s): Bradley C. Naylor, J. Leon Catrow, J. Alan Maschek, James E. Cox
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-020-02251-5
Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stabilityCited by: 26
Author(s): Santiago G. Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijerph17051498
Characterization of Esophageal Cancer and Its Association with Influencing Factors in Guangzhou City, ChinaCited by: 4
Author(s): Cheng Cui, Dong Hua, Hongyan Ren, Guozhen Lin, Lu Zhao
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-79217-x
Sleep classification from wrist-worn accelerometer data using random forestsCited by: 40
Author(s): Kalaivani Sundararajan, Sonja Georgievska, Bart H W Te Lindert, Philip Gehrman, Jennifer Ramautar, Diego R. Mazzotti, Séverine Sabia, Michael N. Weedon, Eus J.W. Van Someren, Lars Ridder, Jian Wang, Vincent T. van Hees
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12911-020-01356-y
Explanation and prediction of clinical data with imbalanced class distribution based on pattern discovery and disentanglementCited by: 9
Author(s): Pei-Yuan Zhou, Andrew K. C. Wong
Software Mentions: 2
Published: almost 5 years ago
10.3390/cells9020326
Computational Detection of Breast Cancer Invasiveness with DNA Methylation BiomarkersCited by: 5
Author(s): Chuyu Wang, Ning Zhao, Linlin Yuan, Xiaoyan Liu
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-017-1729-2
RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkersCited by: 16
Author(s): Nicola Lazzarini, Jaume Bacardit
Software Mentions: 2
Published: over 8 years ago
10.3389/fnbot.2020.578675
Detecting Changes and Avoiding Catastrophic Forgetting in Dynamic Partially Observable EnvironmentsCited by: 0
Author(s): Jeffery Dick, Paweł Ładosz, Eseoghene Ben-Iwhiwhu, Hideyasu Shimadzu, Peter Kinnell, Praveen K. Pilly, Soheil Kolouri, Andrea Soltoggio
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12911-021-01510-0
Explainable AI enables clinical trial patient selection to retrospectively improve treatment effects in schizophreniaCited by: 3
Author(s): Monika S. Mellem, Matthew Kollada, Jane Tiller, Thomas Z. Lauritzen
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-018-0710-y
Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictabilityCited by: 30
Author(s): Telma Pereira, Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0230049
Describing the antimicrobial usage patterns of companion animal veterinary practices; free text analysis of more than 4.4 million consultation recordsCited by: 34
Author(s): Brian Hur, Laura Y. Hardefeldt, Karin Verspoor, Timothy Baldwin, James R. Gilkerson
Software Mentions: 2
Published: over 5 years ago
10.1038/s41396-021-00926-w
Genomic network analysis of environmental and livestock F-type plasmid populationsCited by: 19
Author(s): William Matlock, Kevin Chau, Manal AbuOun, Emma Stubberfield, Leanne Barker, James Kavanagh, Hayleah Pickford, Daniel Gilson, Richard P. Smith, Hyun S. Gweon, Sarah Hoosdally, Jeremy Swann, Robert Sebra, Mark Bailey, Peto Tea., Derrick W. Crook, Muna F. Anjum, Daniel S. Read, A Sarah Walker, Nicole Stoesser, Liam Shaw, Howard Brett, Mike Bowes, Nicola De Maio, Nicholas Duggett, Duncan Wilson, Alasdair T. M. Hubbard, Hannah Jones, Anna E. Sheppard, Neil Woodford
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-019-0841-9
Automatically determining cause of death from verbal autopsy narrativesCited by: 13
Author(s): Serena Jeblee, Mireille Gomes, Prabhat Jha, Frank Rudzicz, Graeme Hirst
Software Mentions: 2
Published: over 6 years ago
10.7554/eLife.67403
Information content differentiates enhancers from silencers in mouse photoreceptorsCited by: 10
Author(s): Ryan Z. Friedman, David M Granas, Connie A. Myers, Joseph C. Corbo, Barak A. Cohen, Michael A. White
Software Mentions: 2
Published: about 4 years ago
10.1186/s12859-018-2082-9
DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strainsCited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-021-82612-7
Explainable drug sensitivity prediction through cancer pathway enrichmentCited by: 16
Author(s): Yi-Ching Tang, Assaf Gottlieb
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13059-021-02499-5
Biologically relevant transfer learning improves transcription factor binding predictionCited by: 21
Author(s): Gherman Novakovsky, Manu Saraswat, Oriol Fornés, Sara Mostafavi, Wyeth W. Wasserman
Software Mentions: 2
Published: about 4 years ago
10.36834/cmej.69289
Fundamental trends within falling match rates: insights from the past decade of Canadian residency matching dataCited by: 3
Author(s): Andy G.X. Zeng, Connor T. A. Brenna, Silvio Ndoja
Software Mentions: 2
Published: over 5 years ago
10.3390/antibiotics10040449
Meropenem Stability in Human Plasma at −20 °C: Detailed Assessment of DegradationCited by: 6
Author(s): Matthias Gijsen, Benjamin Filtjens, Pieter Annaert, Yeghig Armoudjian, Yves Debaveye, Joost Wauters, Peter Slaets, Isabel Spriet
Software Mentions: 2
Published: over 4 years ago
10.1186/s13073-017-0456-7
Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencingCited by: 66
Author(s): Qian Liu, Peng Zhang, Depeng Wang, Wei Gu, Kai Wang
Software Mentions: 2
Published: over 8 years ago
10.1093/texcom/tgaa066
Cortical Tuning is Impaired After Perceptual Experience in Primary Visual Cortex of Serotonin Transporter-Deficient MiceCited by: 0
Author(s): Alexandr Pak, Alexander A. Chubykin
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13073-019-0686-y
Text-mining clinically relevant cancer biomarkers for curation into the CIViC databaseCited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 6 years ago
10.3389/fgene.2020.00760
EnACP: An Ensemble Learning Model for Identification of Anticancer PeptidesCited by: 20
Author(s): Ruiquan Ge, Guanwen Feng, Xiaoyang Jing, Renfeng Zhang, Pu Wang, Qing Wu
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-83424-5
Assisting scalable diagnosis automatically via CT images in the combat against COVID-19Cited by: 21
Author(s): Bohan Liu, Pan Liu, Lutao Dai, Yanlin Yang, Peng Xie, Yiqing Tan, Jicheng Du, Wei Shan, Chenghui Zhao, Qin Zhong, Xixiang Lin, Xizhou Guan, Ning Xing, Yuhui Sun, Wenjun Wang, Zhibing Zhang, Xinping Fu, Yanqing Fan, Meifang Li, Na Zhang, Lin Li, Yaou Liu, Lin Xu, Juan Du, Zhenhua Zhao, Xuelong Hu, Weipeng Fan, Rongpin Wang, Chongchong Wu, Yongkang Nie, Liuquan Cheng, Lin Ma, Zongren Li, Jia Qian, Minchao Liu, Huayuan Guo, Gao Huang, Haipeng Shen, Liang Zhang, Peifang Zhang, Gang Guo, Hao Li, Weimin An, Zhou Jian-xin, Kunlun He
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0082710
An Automated Blur Detection Method for Histological Whole Slide ImagingCited by: 29
Author(s): Xavier Moles Lopez, Etienne D'Andrea, Paul Barbot, Anne-Sophie Bridoux, Sandrine Rorive, Isabelle Salmon, Olivier Debeir, Christine Decaestecker
Software Mentions: 2
Published: almost 12 years ago
10.1128/mSystems.00775-21
Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver CirrhosisCited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: about 4 years ago
10.1186/s12911-020-1104-5
How to automatically turn patient experience free-text responses into actionable insights: a natural language programming (NLP) approachCited by: 14
Author(s): Simone A. Cammel, Marit S. de Vos, Daphne van Soest, Kristina Hettne, F. Boer, Ewout W. Steyerberg, Hileen Boosman
Software Mentions: 2
Published: over 5 years ago
10.1186/s12911-019-0978-6
Representation learning in intraoperative vital signs for heart failure risk predictionCited by: 12
Author(s): Yuwen Chen, Baolian Qi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-021-84504-2
Machine learning-based prediction model using clinico-pathologic factors for papillary thyroid carcinoma recurrenceCited by: 13
Author(s): Young Min Park, Byung‐Joo Lee
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-020-01217-8
Evaluation of standard and semantically-augmented distance metrics for neurology patientsCited by: 5
Author(s): Daniel B. Hier, Jonathan Kopel, Steven U. Brint, Donald C. Wunsch, Gayla R. Olbricht, Sima Azizi, Blaine Allen
Software Mentions: 2
Published: about 5 years ago