Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.1007/s11695-021-05277-1
Predictors of Postprandial Hypoglycemia After Gastric Bypass Surgery: a Retrospective Case-Control Study
Cited by: 3
Author(s): Elric Zweck, Matthias Hepprich, Marc Y. Donath
Software Mentions: 3
Published: over 4 years ago
10.1038/s41388-020-01614-3
Comprehensive characterisation of intronic mis-splicing mutations in human cancers
Cited by: 20
Author(s): Hyunchul Jung, Kang Seon Lee, Jung Kyoon Choi
Software Mentions: 3
Published: almost 5 years ago
10.7554/eLife.50469
Temporal chunking as a mechanism for unsupervised learning of task-sets
Cited by: 14
Author(s): Flora Bouchacourt, Stefano Palminteri, Etienne Koechlin, Srdjan Ostojic
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.52707
The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies
Cited by: 19
Author(s): Jennifer E. L. Diaz, Mehmet Eren Ahsen, Thomas Schaffter, Xintong Chen, Ronald Realubit, Charles Karan, Andrea Califano, Bojan Losic, Gustavo Stolovitzky
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.46935
Deep generative models for T cell receptor protein sequences
Cited by: 57
Author(s): Kristian Davidsen, Branden J Olson, William S DeWitt, Jean Feng, Elias Harkins, Philip Bradley, F. A. Matsen
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.54055
Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers
Cited by: 60
Author(s): Denis A. Engemann, Oleh Kozynets, David Sabbagh, G Lemaître, Gaël Varoquaux, Franziskus Liem, Alexandre Gramfort
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.56890
Diverse homeostatic and immunomodulatory roles of immune cells in the developing mouse lung at single cell resolution
Cited by: 27
Author(s): Racquel Domingo-Gonzalez, Fabio Zanini, Xibing Che, Min Liu, Robert C. Jones, Michael Swift, Stephen R. Quake, David N. Cornfield, Cristina M. Alvira
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.51975
Elements of a stochastic 3D prediction engine in larval zebrafish prey capture
Cited by: 28
Author(s): Andrew D. Bolton, Martin Haesemeyer, Josua Jordi, Ulrich Schaechtle, Feras A. Saad, Vikash K. Mansinghka, Joshua B. Tenenbaum, Florian Engert
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12918-018-0587-5
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
Cited by: 35
Author(s): Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand V. Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-58804-y
Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma
Cited by: 15
Author(s): Ninadh Malrina D’Costa, Davide P. Cinà, Raunak Shrestha, Robert H. Bell, Yen-Yi Lin, Hossein Asghari, César Monjarás‐Ávila, Christian Kollmannsberger, Faraz Hach, Claudia Chávez-Muñoz, Alan So
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-59553-8
Essential oils against bacterial isolates from cystic fibrosis patients by means of antimicrobial and unsupervised machine learning approaches
Cited by: 28
Author(s): Rino Ragno, Rosanna Papa, Alexandros Patsilinakos, Gianluca Vrenna, Stefania Garzoli, Vanessa Tuccio Guarna Assanti, E. Fiscarelli, Laura Selan, Marco Artini
Software Mentions: 2
Published: over 5 years ago
10.3389/fchem.2019.00315
Ligand Binding Induces Agonistic-Like Conformational Adaptations in Helix 12 of Progesterone Receptor Ligand Binding Domain
Cited by: 5
Author(s): Lihe Zheng, Kelin Xia, Yuguang Mu
Software Mentions: 2
Published: over 6 years ago
10.1093/ve/veaa106
Tuning intrinsic disorder predictors for virus proteins
Cited by: 3
Author(s): Gal Almog, Abayomi S Olabode, Art F. Y. Poon
Software Mentions: 2
Published: almost 5 years ago
10.1534/g3.116.038448
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-60740-w
Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning
Cited by: 18
Author(s): Shikha Roy, Rakesh Kumar, Vaibhav Mittal, Dinesh Gupta
Software Mentions: 2
Published: over 5 years ago
10.1245/s10434-020-08659-4
Multiparametric MRI and Whole Slide Image-Based Pretreatment Prediction of Pathological Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer: A Multicenter Radiopathomic Study
Cited by: 32
Author(s): Lizhi Shao, Zhenyu Liu, Lili Feng, Xiaoying Lou, Zhenhui Li, Xiao Yan Zhang, Xiang-Bo Wan, Xuezhi Zhou, Kai Sun, Da Fu Zhang, Lin Wu, Guanyu Yang, Ying Sun, Rui‐hua Xu, Xinjuan Fan, Jie Tian
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers13133106
SurvCNN: A Discrete Time-to-Event Cancer Survival Estimation Framework Using Image Representations of Omics Data
Cited by: 1
Author(s): Yogesh Kalakoti, Shashank Yadav, Durai Sundar
Software Mentions: 2
Published: over 4 years ago
10.3389/fchem.2019.00035
e-Sweet: A Machine-Learning Based Platform for the Prediction of Sweetener and Its Relative Sweetness
Cited by: 23
Author(s): Suqing Zheng, Wenping Chang, Wenxin Xu, Yong Xu, Lin Fu
Software Mentions: 2
Published: almost 7 years ago
10.1155/2020/8450656
An Immune-Related Gene Panel for Preoperative Lymph Node Status Evaluation in Advanced Gastric Cancer
Cited by: 5
Author(s): Yuan Yang, Ya Zheng, Hongling Zhang, Yifei Miao, Gongjin Wu, Lingshan Zhou, Haoying Wang, Rui Ji, Qinghong Guo, Zhaofeng Chen, Jiangtao Wang, Yuping Wang, Yongning Zhou
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers11111751
The Performance of Different Artificial Intelligence Models in Predicting Breast Cancer among Individuals Having Type 2 Diabetes Mellitus
Cited by: 7
Author(s): Meng-Hsuen Hsieh, Li‐Min Sun, Cheng‐Li Lin, Meng-Ju Hsieh, Chung Y. Hsu, Chia Hung Kao
Software Mentions: 2
Published: about 6 years ago
10.1007/s00401-020-02171-5
Patient-derived orthotopic xenografts of pediatric brain tumors: a St. Jude resource
Cited by: 38
Author(s): Kyle Smith, Ke Xu, Kimberly Mercer, Frederick A. Boop, Paul Klimo, Michael DeCupyere, José Grenet, Sarah Robinson, Paige S. Dunphy, Suzanne J. Baker, David W. Ellison, Thomas E. Merchant, Santhosh A Upadayaya, Amar Gajjar, Gang Wu, Brent A. Orr, Giles Robinson, Paul A. Northcott, Martine F. Roussel
Software Mentions: 2
Published: over 5 years ago
10.3389/fchem.2019.00899
Vienna LiverTox Workspace—A Set of Machine Learning Models for Prediction of Interactions Profiles of Small Molecules With Transporters Relevant for Regulatory Agencies
Cited by: 14
Author(s): Floriane Montanari, Bernhard Knasmüller, Stefan Michael Kohlbacher, Christoph Hillisch, Christine Baierová, Melanie Grandits, Gerhard Ecker
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-020-03603-5
A cell-level quality control workflow for high-throughput image analysis
Cited by: 3
Author(s): Minhua Qiu, Bin Zhou, Frederick Lo, Steven C. Cook, Jason Chyba, Doug Quackenbush, Jason Matzen, Zhizhong Li, Puiying A. Mak, Kaisheng Chen, Yingyao Zhou
Software Mentions: 2
Published: over 5 years ago
10.3390/genes9100478
An Improved Method for Prediction of Cancer Prognosis by Network Learning
Cited by: 32
Author(s): Min‐Seon Kim, Ilhwan Oh, Jaegyoon Ahn
Software Mentions: 2
Published: about 7 years ago
10.1186/s13104-015-1039-6
A property-based analysis of human transcription factors
Cited by: 7
Author(s): Shahram Bahrami, Rezvan Ehsani, Finn Drabløs
Software Mentions: 2
Published: over 10 years ago
10.3389/fninf.2018.00055
Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network Connectivity
Cited by: 15
Author(s): Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva, Vince D. Calhoun
Software Mentions: 2
Published: about 7 years ago
10.1093/infdis/jiy427
Genome-Wide Sequence Analysis of Kaposi Sarcoma-Associated Herpesvirus Shows Diversification Driven by Recombination
Cited by: 26
Author(s): Neneh Sallah, Anne L. Palser, Simon J. Watson, Nazzarena Labò, Gershim Asiki, Vickie Marshall, Robert Newton, Paul Kellam, Inês Barroso
Software Mentions: 2
Published: over 7 years ago
10.3389/fchem.2019.00211
The Effect of Cofactor Binding on the Conformational Plasticity of the Biological Receptors in Artificial Metalloenzymes: The Case Study of LmrR
Cited by: 9
Author(s): Lur Alonso‐Cotchico, Jaime Rodríguez-Guerra Pedregal, Agustı́ Lledós, Jean‐Didier Maréchal
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/4795140
Machine-Learning Prediction of Oral Drug-Induced Liver Injury (DILI) via Multiple Features and Endpoints
Cited by: 9
Author(s): Xiaobin Liu, Danhua Zheng, Yingying Zhong, Zhaofan Xia, Heng Luo, Zuquan Weng
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0223137
Classification of neurons in the adult mouse cochlear nucleus: Linear discriminant analysis
Cited by: 9
Author(s): Paul B. Manis, Michael R. Kasten, Ruili Xie
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0241686
Evaluation of classification and forecasting methods on time series gene expression data
Cited by: 3
Author(s): Nafis Irtiza Tripto, M. R. Kabir, Md. Shamsuzzoha Bayzid, Atif Rahman
Software Mentions: 2
Published: about 5 years ago
10.1007/s10895-020-02635-7
A Novel Dual Antibody Staining Assay to Measure Estrogen Receptor Transcriptional Activity
Cited by: 1
Author(s): Freek van Hemert, Christa Dam-de Veen, Sil Konings, John van der Ven, Anja van de Stolpe
Software Mentions: 2
Published: almost 5 years ago
10.1534/genetics.116.195214
Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps
Cited by: 114
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0199089
Feature selection for the accurate prediction of septic and cardiogenic shock ICU mortality in the acute phase
Cited by: 22
Author(s): Alexander Aushev, Vicent Ribas Ripoll, Alfredo Vellido, Federico Aletti, Bernardo Bollen Pinto, Antoine Herpain, Emiel Hendrik Post, Eduardo Romay Medina, Ricard Ferrer, Giuseppe Baselli, Karim Bendjelid
Software Mentions: 2
Published: almost 7 years ago
10.1186/s13059-016-0957-5
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
Cited by: 62
Author(s): Valentina Proserpio, Andrea Piccolo, Liora Haim-Vilmovsky, Gozde Kar, Tapio Lönnberg, Valentine Svensson, Jhuma Pramanik, Kedar Nath Natarajan, Weichao Zhai, Xiuwei Zhang, Giacomo Donati, Melis Kayikci, Jurij Kotar, Andrew N. J. McKenzie, Ruddy Montandon, Oliver Billker, Steven Woodhouse, Pietro Cicuta, Mario Nicodemi, Sarah A. Teichmann
Software Mentions: 2
Published: over 9 years ago
10.1155/2020/7103647
A CT-Based Radiomics Approach for the Differential Diagnosis of Sarcomatoid and Clear Cell Renal Cell Carcinoma
Cited by: 15
Author(s): Xiaohong Meng, Jing Shu, Yuwei Xia, Ruwu Yang
Software Mentions: 2
Published: over 5 years ago
10.2196/publichealth.8950
Accurate Influenza Monitoring and Forecasting Using Novel Internet Data Streams: A Case Study in the Boston Metropolis
Cited by: 83
Author(s): Fred Lu, Suqin Hou, Kristin Baltrusaitis, Manan Shah, Jure Leskovec, Rok Sosič, Joseph E. Hawkins, John S. Brownstein, Giuseppe Conidi, Julia Gunn, Josh Gray, Anna Zink, Mauricio Santillana
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-020-68853-y
Cortical network responses map onto data-driven features that capture visual semantics of movie fragments
Cited by: 6
Author(s): Julia Berezutskaya, Zachary V. Freudenburg, Luca Ambrogioni, Umut Güçlü, Marcel A. J. van Gerven, N.F. Ramsey
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-017-1189-z
DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning
Cited by: 340
Author(s): Christof Angermueller, Heather Lee, Wolf Reik
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0253851
Persistent homology as a new method of the assessment of heart rate variability
Cited by: 6
Author(s): Grzegorz Graff, Beata Graff, Paweł Pilarczyk, Grzegorz Jabłoński, Dariusz Gąsecki, Krzysztof Narkiewicz
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0176486
A novel framework for the identification of drug target proteins: Combining stacked auto-encoders with a biased support vector machine
Cited by: 25
Author(s): Qi Wang, Yanghe Feng, Jincai Huang, Tengjiao Wang, Guangquan Cheng
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-68858-7
Inferring disease subtypes from clusters in explanation space
Cited by: 16
Author(s): Marc-André Schulz, Matt Chapman-Rounds, Manisha Verma, Danilo Bzdok, Konstantinos Georgatzis
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-69848-5
Deep learning on the 2-dimensional Ising model to extract the crossover region with a variational autoencoder
Cited by: 16
Author(s): Nicholas Walker, Ka-Ming Tam, Mark Jarrell
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-69927-7
Sibling validation of polygenic risk scores and complex trait prediction
Cited by: 21
Author(s): Louis Lello, Timothy G. Raben, Stephen Hsu
Software Mentions: 2
Published: over 5 years ago
10.3389/fneur.2021.670944
A Set of Eight Key Questions Helps to Classify Common Vestibular Disorders—Results From the DizzyReg Patient Registry
Cited by: 7
Author(s): Ralf Strobl, Michael Grözinger, Andreas Zwergal, Doreen Huppert, Filipp Filippopulos, Eva Grill
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0207749
Machine learning model combining features from algorithms with different analytical methodologies to detect laboratory-event-related adverse drug reaction signals
Cited by: 23
Author(s): Eugene Jeong, Namgi Park, Young Sik Choi, Rae Woong Park, Dukyong Yoon
Software Mentions: 2
Published: almost 7 years ago
10.3389/fncom.2019.00039
On the Sparse Structure of Natural Sounds and Natural Images: Similarities, Differences, and Implications for Neural Coding
Cited by: 4
Author(s): Eric McVoy Dodds, Michael R. DeWeese
Software Mentions: 2
Published: over 6 years ago
10.3390/ijerph16152666
Comparisons among Machine Learning Models for the Prediction of Hypercholestrolemia Associated with Exposure to Lead, Mercury, and Cadmium
Cited by: 7
Author(s): Hyejin Park, Kisok Kim
Software Mentions: 2
Published: over 6 years ago
10.1186/s12911-020-1069-4
Sparse multi-output Gaussian processes for online medical time series prediction
Cited by: 23
Author(s): Li Cheng, Bianca Dumitrascu, Gregory Darnell, Corey Chivers, Michael Draugelis, Kai Li, Barbara E. Engelhardt
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-019-1776-2
Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation
Cited by: 62
Author(s): Channabasavaiah B. Gurumurthy, Aidan O’Brien, Rolen M. Quadros, John Adams, Pilar Alcaide, Shin-ichi Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Ève Beauchamp, Kathleen A. Becker, Guillaume Bernas, David Brough, Francisco Carrillo‐Salinas, Wesley Chan, Hanying Chen, Ruby Dawson, Victoria DeMambro, Jinke D’Hont, Katharine M. Dibb, James D. Eudy, Lin Gan, Jing Gao, Amy Gonzales, Anyonya R. Guntur, Hongqian Guo, Donald W. Harms, Anne Harrington, Kathryn E. Hentges, Neil Humphreys, Shiho Imai, Hideshi Ishii, Mizuho Iwama, Eric Jonasch, Michelle Karolak, Bernard Keavney, Nay Chi Khin, Masamitsu Konno, Yuko Kotani, Yayoi Kunihiro, Imayavaramban Lakshmanan, Catherine Larochelle, Catherine B. Lawrence, Lin Li, Volkhard Lindner, Xian De Liu, Gloria López-Castejón, A. S. I. Loudon, Jenna Lowe, Loydie A. Jerome-Majewska, Taiji Matsusaka, Hiromi Miura, Yoshiki Miyasaka, Benjamin Morpurgo, Katherine J. Motyl, Yo Ichi Nabeshima, Koji Nakade, Toshiaki Nakashiba, Ken‐ichi Nakashima, Yuichi Obata, Sanae Ogiwara, Mario Ouellet, Leif Oxburgh, Sandra Piltz, Ilka Pinz, Moorthy P. Ponnusamy, David Ray, Ronald Redder, Clifford J. Rosen, Nikki Ross, Mark T. Ruhe, Larisa Ryzhova, Ane M. Salvador, Sabrina Alam, Radislav Sedláček, Karan Sharma, Chad Smith, Katrien Staes, Lora Starrs, Fumihiro Sugiyama, Satoru Takahashi, Tomohiro Tanaka, Andrew W. Trafford, Yoshihiro Uno, Leen Vanhoutte, Frederique Vanrockeghem, Brandon Willis, Christian S Wright, Yuko Yamauchi, Xin Yi, Kazuto Yoshimi, Xuesong Zhang, Yu Zhang, Masato Ohtsuka, Satyabrata Das, Daniel J. Garry, Tino Hochepied, Paul Q. Thomas, Jan Parker-Thornburg, Antony Adamson, Atsushi Yoshiki, Jean Francois Schmouth, Андрей Головко, William R. Thompson, Kevin C K Lloyd, Joshua A. Wood, Mitra Cowan, Tomoji Mashimo, Seiya Mizuno, Min Zhu, Petr Kašpárek, Lucy Liaw, Joseph M. Miano, Gaétan Burgio
Software Mentions: 2
Published: about 6 years ago
10.3389/fneur.2020.00007
Prediction of Vestibular Dysfunction by Applying Machine Learning Algorithms to Postural Instability
Cited by: 19
Author(s): Teru Kamogashira, Chisato Fujimoto, Makoto Kinoshita, Yuichiro Kikkawa, Tatsuya Yamasoba, Shinichi Iwasaki
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.26066
Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes
Cited by: 38
Author(s): Sébastien Colin, Luís Pedro Coelho, Shinichi Sunagawa, Chris Bowler, Eric Karsenti, Peer Bork, Rainer Pepperkok, Colomban de Vargas
Software Mentions: 2
Published: about 8 years ago
10.1016/j.celrep.2021.109566
Synchronization patterns reveal neuronal coding of working memory content
Cited by: 11
Author(s): Fahimeh Mamashli, Sheraz Khan, Matti S. Hämäläinen, Mainak Jas, Tommi Raij, Steven M. Stufflebeam, Aapo Nummenmaa, Jyrki Ahveninen
Software Mentions: 2
Published: over 4 years ago
10.3389/fneur.2020.00886
Multi-Dimensional, Short-Timescale Quantification of Parkinson's Disease and Essential Tremor Motor Dysfunction
Cited by: 5
Author(s): John Sanderson, James Yu, David D. Liu, Daniel E Amaya, Peter M Lauro, Anelyssa D’Abreu, Umer Akbar, Shane Lee, Wael F. Asaad
Software Mentions: 2
Published: about 5 years ago
10.1186/s12911-020-01329-1
Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosis
Cited by: 13
Author(s): Bin Ma, Zhaolong Wu, Shengyu Li, Ryan Benton, Dongqi Li, Yulong Huang, Mohan Vamsi Kasukurthi, Jingwei Lin, Glen M. Borchert, Shaobo Tan, Gang Li, Meihong Yang, Jingshan Huang
Software Mentions: 2
Published: almost 5 years ago
10.1186/s40168-020-00990-y
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Cited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 5 years ago
10.7554/eLife.43803
Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq
Cited by: 212
Author(s): Dylan Kotliar, Adrian Veres, Martina Nagy, Shervin Tabrizi, Eran Hodis, Douglas A. Melton, Pardis C. Sabeti
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-15-93
SPiCE: a web-based tool for sequence-based protein classification and exploration
Cited by: 16
Author(s): Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0230136
BRAF V600E mutational load as a prognosis biomarker in malignant melanoma
Cited by: 9
Author(s): Arrate Sevilla, María–Celia Morales, Pilar Ariadna Ezkurra, Javier Rasero, Verónica Velasco, Goikoane Cancho-Galan, Ana Sánchez-Díez, Karmele Mujika, Cristina Penas, Isabel Smith, Aintzane Asumendi, Jesús M. Cortés, María Dolores Boyano, Santos Alonso
Software Mentions: 2
Published: over 5 years ago
10.1016/j.wroa.2021.100093
Predictive water virology using regularized regression analyses for projecting virus inactivation efficiency in ozone disinfection
Cited by: 9
Author(s): Syun suke Kadoya, Osamu Nishimura, Hiroyuki Kato, Daisuke Sano
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-76129-8
Identification of early liver toxicity gene biomarkers using comparative supervised machine learning
Cited by: 11
Author(s): Brandi Patrice Smith, Loretta Auvil, Michael Welge, Colleen Bushell, Rohit Bhargava, Navin Elango, Kamin J. Johnson, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: about 5 years ago
10.3389/fneur.2019.00996
The Pragmatic Classification of Upper Extremity Motion in Neurological Patients: A Primer
Cited by: 8
Author(s): Avinash Parnandi, Jasim Uddin, Dawn Nilsen, Heidi M. Schambra
Software Mentions: 2
Published: about 6 years ago
10.1186/s12859-021-04270-w
PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets
Cited by: 21
Author(s): Léa Pradier, Tazzio Tissot, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme
Software Mentions: 2
Published: over 4 years ago
10.1016/j.celrep.2020.02.094
Machine Learning Uncovers Food- and Excipient-Drug Interactions
Cited by: 34
Author(s): Daniel Reker, Yulei Shi, Ameya R. Kirtane, Kaitlyn Hess, Grace Zhong, Evan Crane, Chin‐Feng Lin, Robert Langer, Giovanni Traverso
Software Mentions: 2
Published: over 5 years ago
10.3389/fneur.2019.00655
Quantifying the Confidence in fMRI-Based Language Lateralisation Through Laterality Index Deconstruction
Cited by: 7
Author(s): Martin Wegrzyn, Markus Mertens, Christian G. Bien, Friedrich G. Woermann, Kirsten Labudda
Software Mentions: 2
Published: over 6 years ago
10.1186/s42523-021-00075-7
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region
Cited by: 33
Author(s): Jie Wang, Alexander Jaramillo-Torres, Yanxian Li, Trond M. Kortner, Karina Gajardo, Øyvind Jakobsen Brevik, Jan Vidar Jakobsen, Åshild Krogdahl
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0241690
Early screening of autism spectrum disorder using cry features
Cited by: 6
Author(s): Aida Khozaei, Hadi Moradi, Reshad Hosseini, Hamidreza Pouretemad, Bahareh Eskandari
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13059-020-02065-5
Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
Cited by: 18
Author(s): C. Anthony Scott, Jack D. Duryea, Harry A. Mackay, Maria S. Baker, Eleonora Laritsky, T.D.C.P. Gunasekara, Cristian Coarfa, Robert A. Waterland
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-76928-z
Machine learning predicts live-birth occurrence before in-vitro fertilization treatment
Cited by: 25
Author(s): Ashish Goyal, Maheshwar Kuchana, Kameswari Prasada Rao Ayyagari
Software Mentions: 2
Published: almost 5 years ago
10.1186/s40170-020-0211-1
Common biochemical properties of metabolic genes recurrently dysregulated in tumors
Cited by: 9
Author(s): Krishnadev Oruganty, Scott Campit, Sainath Mamde, Costas A. Lyssiotis, Sriram Chandrasekaran
Software Mentions: 2
Published: over 5 years ago
10.3390/metabo10060237
QSRR Automator: A Tool for Automating Retention Time Prediction in Lipidomics and Metabolomics
Cited by: 27
Author(s): Bradley C. Naylor, J. Leon Catrow, J. Alan Maschek, James E. Cox
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-020-02251-5
Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
Cited by: 26
Author(s): Santiago G. Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijerph17051498
Characterization of Esophageal Cancer and Its Association with Influencing Factors in Guangzhou City, China
Cited by: 4
Author(s): Cheng Cui, Dong Hua, Hongyan Ren, Guozhen Lin, Lu Zhao
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-79217-x
Sleep classification from wrist-worn accelerometer data using random forests
Cited by: 40
Author(s): Kalaivani Sundararajan, Sonja Georgievska, Bart H W Te Lindert, Philip Gehrman, Jennifer Ramautar, Diego R. Mazzotti, Séverine Sabia, Michael N. Weedon, Eus J.W. Van Someren, Lars Ridder, Jian Wang, Vincent T. van Hees
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12911-020-01356-y
Explanation and prediction of clinical data with imbalanced class distribution based on pattern discovery and disentanglement
Cited by: 9
Author(s): Pei-Yuan Zhou, Andrew K. C. Wong
Software Mentions: 2
Published: almost 5 years ago
10.3390/cells9020326
Computational Detection of Breast Cancer Invasiveness with DNA Methylation Biomarkers
Cited by: 5
Author(s): Chuyu Wang, Ning Zhao, Linlin Yuan, Xiaoyan Liu
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-017-1729-2
RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers
Cited by: 16
Author(s): Nicola Lazzarini, Jaume Bacardit
Software Mentions: 2
Published: over 8 years ago
10.3389/fnbot.2020.578675
Detecting Changes and Avoiding Catastrophic Forgetting in Dynamic Partially Observable Environments
Cited by: 0
Author(s): Jeffery Dick, Paweł Ładosz, Eseoghene Ben-Iwhiwhu, Hideyasu Shimadzu, Peter Kinnell, Praveen K. Pilly, Soheil Kolouri, Andrea Soltoggio
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12911-021-01510-0
Explainable AI enables clinical trial patient selection to retrospectively improve treatment effects in schizophrenia
Cited by: 3
Author(s): Monika S. Mellem, Matthew Kollada, Jane Tiller, Thomas Z. Lauritzen
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-018-0710-y
Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictability
Cited by: 30
Author(s): Telma Pereira, Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0230049
Describing the antimicrobial usage patterns of companion animal veterinary practices; free text analysis of more than 4.4 million consultation records
Cited by: 34
Author(s): Brian Hur, Laura Y. Hardefeldt, Karin Verspoor, Timothy Baldwin, James R. Gilkerson
Software Mentions: 2
Published: over 5 years ago
10.1038/s41396-021-00926-w
Genomic network analysis of environmental and livestock F-type plasmid populations
Cited by: 19
Author(s): William Matlock, Kevin Chau, Manal AbuOun, Emma Stubberfield, Leanne Barker, James Kavanagh, Hayleah Pickford, Daniel Gilson, Richard P. Smith, Hyun S. Gweon, Sarah Hoosdally, Jeremy Swann, Robert Sebra, Mark Bailey, Peto Tea., Derrick W. Crook, Muna F. Anjum, Daniel S. Read, A Sarah Walker, Nicole Stoesser, Liam Shaw, Howard Brett, Mike Bowes, Nicola De Maio, Nicholas Duggett, Duncan Wilson, Alasdair T. M. Hubbard, Hannah Jones, Anna E. Sheppard, Neil Woodford
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-019-0841-9
Automatically determining cause of death from verbal autopsy narratives
Cited by: 13
Author(s): Serena Jeblee, Mireille Gomes, Prabhat Jha, Frank Rudzicz, Graeme Hirst
Software Mentions: 2
Published: over 6 years ago
10.7554/eLife.67403
Information content differentiates enhancers from silencers in mouse photoreceptors
Cited by: 10
Author(s): Ryan Z. Friedman, David M Granas, Connie A. Myers, Joseph C. Corbo, Barak A. Cohen, Michael A. White
Software Mentions: 2
Published: about 4 years ago
10.1186/s12859-018-2082-9
DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strains
Cited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-021-82612-7
Explainable drug sensitivity prediction through cancer pathway enrichment
Cited by: 16
Author(s): Yi-Ching Tang, Assaf Gottlieb
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13059-021-02499-5
Biologically relevant transfer learning improves transcription factor binding prediction
Cited by: 21
Author(s): Gherman Novakovsky, Manu Saraswat, Oriol Fornés, Sara Mostafavi, Wyeth W. Wasserman
Software Mentions: 2
Published: about 4 years ago
10.36834/cmej.69289
Fundamental trends within falling match rates: insights from the past decade of Canadian residency matching data
Cited by: 3
Author(s): Andy G.X. Zeng, Connor T. A. Brenna, Silvio Ndoja
Software Mentions: 2
Published: over 5 years ago
10.3390/antibiotics10040449
Meropenem Stability in Human Plasma at −20 °C: Detailed Assessment of Degradation
Cited by: 6
Author(s): Matthias Gijsen, Benjamin Filtjens, Pieter Annaert, Yeghig Armoudjian, Yves Debaveye, Joost Wauters, Peter Slaets, Isabel Spriet
Software Mentions: 2
Published: over 4 years ago
10.1186/s13073-017-0456-7
Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Cited by: 66
Author(s): Qian Liu, Peng Zhang, Depeng Wang, Wei Gu, Kai Wang
Software Mentions: 2
Published: over 8 years ago
10.1093/texcom/tgaa066
Cortical Tuning is Impaired After Perceptual Experience in Primary Visual Cortex of Serotonin Transporter-Deficient Mice
Cited by: 0
Author(s): Alexandr Pak, Alexander A. Chubykin
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13073-019-0686-y
Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
Cited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 6 years ago
10.3389/fgene.2020.00760
EnACP: An Ensemble Learning Model for Identification of Anticancer Peptides
Cited by: 20
Author(s): Ruiquan Ge, Guanwen Feng, Xiaoyang Jing, Renfeng Zhang, Pu Wang, Qing Wu
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-83424-5
Assisting scalable diagnosis automatically via CT images in the combat against COVID-19
Cited by: 21
Author(s): Bohan Liu, Pan Liu, Lutao Dai, Yanlin Yang, Peng Xie, Yiqing Tan, Jicheng Du, Wei Shan, Chenghui Zhao, Qin Zhong, Xixiang Lin, Xizhou Guan, Ning Xing, Yuhui Sun, Wenjun Wang, Zhibing Zhang, Xinping Fu, Yanqing Fan, Meifang Li, Na Zhang, Lin Li, Yaou Liu, Lin Xu, Juan Du, Zhenhua Zhao, Xuelong Hu, Weipeng Fan, Rongpin Wang, Chongchong Wu, Yongkang Nie, Liuquan Cheng, Lin Ma, Zongren Li, Jia Qian, Minchao Liu, Huayuan Guo, Gao Huang, Haipeng Shen, Liang Zhang, Peifang Zhang, Gang Guo, Hao Li, Weimin An, Zhou Jian-xin, Kunlun He
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0082710
An Automated Blur Detection Method for Histological Whole Slide Imaging
Cited by: 29
Author(s): Xavier Moles Lopez, Etienne D'Andrea, Paul Barbot, Anne-Sophie Bridoux, Sandrine Rorive, Isabelle Salmon, Olivier Debeir, Christine Decaestecker
Software Mentions: 2
Published: almost 12 years ago
10.1128/mSystems.00775-21
Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis
Cited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: about 4 years ago
10.1186/s12911-020-1104-5
How to automatically turn patient experience free-text responses into actionable insights: a natural language programming (NLP) approach
Cited by: 14
Author(s): Simone A. Cammel, Marit S. de Vos, Daphne van Soest, Kristina Hettne, F. Boer, Ewout W. Steyerberg, Hileen Boosman
Software Mentions: 2
Published: over 5 years ago
10.1186/s12911-019-0978-6
Representation learning in intraoperative vital signs for heart failure risk prediction
Cited by: 12
Author(s): Yuwen Chen, Baolian Qi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-021-84504-2
Machine learning-based prediction model using clinico-pathologic factors for papillary thyroid carcinoma recurrence
Cited by: 13
Author(s): Young Min Park, Byung‐Joo Lee
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-020-01217-8
Evaluation of standard and semantically-augmented distance metrics for neurology patients
Cited by: 5
Author(s): Daniel B. Hier, Jonathan Kopel, Steven U. Brint, Donald C. Wunsch, Gayla R. Olbricht, Sima Azizi, Blaine Allen
Software Mentions: 2
Published: about 5 years ago