Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: samplot

https://packages.ecosyste.ms/registries/pypi.org/packages/samplot

Method to print the graph by just passing coulumn number
1 version
Latest release: about 4 years ago
13 downloads last month

Papers Mentioning samplot 8

MoMI-G: modular multi-scale integrated genome graph browser
Cited by: 20
Author(s): Toshiyuki Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara
Software Mentions: 8
Published: about 5 years ago

10.1038/s10038-019-0687-0

Visualization tools for human structural variations identified by whole-genome sequencing
Cited by: 8
Author(s): Toshiyuki Yokoyama, Masahiro Kasahara
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pgen.1009566

Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies
Cited by: 19
Author(s): James R. Whiting, Josephine R. Paris, Mijke J. van der Zee, Paul J. Parsons, Detlef Weigel, Bonnie A. Fraser
Software Mentions: 7
Published: over 3 years ago

10.1093/gigascience/giz040

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls
Cited by: 41
Author(s): Brent S. Pedersen, Aaron R. Quinlan
Software Mentions: 3
Published: over 5 years ago

10.1038/s41436-021-01126-9

Genome-wide investigation identifies a rare copy-number variant burden associated with human spina bifida
Cited by: 7
Author(s): Paul Wolujewicz, Vanessa Aguiar‐Pulido, Alice AbdelAleem, Vidya Nair, Gaurav Thareja, Karsten Suhre, Gary M. Shaw, Richard H. Finnell, Olivier Elemento, M. Elizabeth Ross
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1007933

A crowdsourced set of curated structural variants for the human genome
Cited by: 5
Author(s): Lesley Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme C. Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
Software Mentions: 3
Published: over 4 years ago

10.1093/gigascience/giy064

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Cited by: 27
Author(s): Jonathan R Belyeu, Thomas J. Nicholas, Brent S. Pedersen, Thomas A Sasani, James M Havrilla, Stephanie N. Kravitz, Megan E Conway, Brian K. Lohman, Aaron R. Quinlan, Ryan M. Layer
Software Mentions: 3
Published: over 6 years ago

10.3390/antibiotics9110825

Absence of mgrB Alleviates Negative Growth Effects of Colistin Resistance in Enterobacter cloacae
Cited by: 2
Author(s): Jessie E. Wozniak, Aroon T. Chande, Eileen M. Burd, Victor I. Band, Sarah W. Satola, Monica M. Farley, Jesse T Jacob, I. King Jordan, David S. Weiss
Software Mentions: 1
Published: about 4 years ago