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Projects: pypi: redbiom

https://packages.ecosyste.ms/registries/pypi.org/packages/redbiom

Sample search by metadata and features
10 versions
Latest release: over 3 years ago
1 dependent package
163 downloads last month

Enhanced Analysis
Educational Contributors: mcdonadt@colorado.edu danielmcdonald@ucsd.edu ccowart@ucsd.edu
Repository Activity:
Repository Owner: biocore (organization)
Collaboratively developed bioinformatics software. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +20 DOI references
    2 DOI references found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning redbiom 4

10.1038/s41396-019-0482-0
Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov
Cited by: 74
Author(s): J. Grace Klinges, Stephanie M. Rosales, Ryan McMinds, Elizabeth C. Shaver, Andrew A. Shantz, Esther C. Peters, Michael Eitel, Gert Wörheide, Koty Sharp, Deron E. Burkepile, Brian R. Silliman, Rebecca L. Vega Thurber
Software Mentions: 2
Published: almost 7 years ago
10.1186/s40168-019-0742-2
Challenges in the construction of knowledge bases for human microbiome-disease associations
Cited by: 32
Author(s): Varsha D. Badal, Dustin Wright, Yannis Katsis, Ho-Cheol Kim, Austin D. Swafford, Rob Knight, Chun‐Nan Hsu
Software Mentions: 1
Published: almost 7 years ago
10.1128/mSystems.00215-19
redbiom: a Rapid Sample Discovery and Feature Characterization System
Cited by: 33
Author(s): Daniel McDonald, Benjamin Kaehler, Antonio G. González, Jeff DeReus, Gail Ackermann, Clarisse Marotz, Gavin A. Huttley, Rob Knight
Software Mentions: 1
Published: almost 7 years ago
10.1128/mSystems.00630-19
Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
Cited by: 65
Author(s): Shi Huang, Niina Haiminen, Anna-Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida, Baylee J. Russell, Celeste Allaband, Amir Zarrinpar, Yoshiki Vázquez-Baeza, Pedro Belda-Ferre, Hongwei Zhou, Ho-Cheol Kim, Austin D. Swafford, Rob Knight, Zhenjiang Xu
Software Mentions: 1
Published: over 6 years ago