Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: recon

https://packages.ecosyste.ms/registries/pypi.org/packages/recon

Recon is a Trigger-based replacement for RANCID.
1 version
Latest release: over 9 years ago
48 downloads last month

Papers Mentioning recon 20

Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography
Cited by: 78
Author(s): Liberty S. Hamilton, David L. Chang, Morgan B. Lee, Edward F. Chang
Software Mentions: 9
Published: about 7 years ago

10.1111/1755-0998.12443

The <i>de novo</i> genome assembly and annotation of a female domestic dromedary of North African origin
Cited by: 56
Author(s): Robert R. Fitak, Elmira Mohandesan, Jukka Corander, Pamela A. Burger
Software Mentions: 9
Published: over 9 years ago

10.12688/f1000research.14361.1

freesurfer: Connecting the Freesurfer software with R
Cited by: 7
Author(s): John Muschelli, Elizabeth Sweeney, Ciprian M. Crainiceanu
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.2837

Rapid maximum likelihood ancestral state reconstruction of continuous characters: A rerooting‐free algorithm
Cited by: 16
Author(s): Eric W. Goolsby
Software Mentions: 7
Published: over 7 years ago

10.1002/hbm.25368

Brain age prediction: A comparison between machine learning models using region‐ and voxel‐based morphometric data
Cited by: 52
Author(s): Lea Baecker, Jessica Dafflon, Pedro F. da Costa, Rafael Garcia‐Dias, Sandra Vieira, Cristina Scarpazza, Vince D. Calhoun, João Ricardo Sato, Andrea Mechelli, Walter Hugo Lopez Pinaya
Software Mentions: 5
Published: over 3 years ago

10.1177/1362361320969258

Difference in default mode network subsystems in autism across childhood and adolescence
Cited by: 12
Author(s): Joe Bathelt, Hilde M. Geurts
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13059-015-0746-6

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks
Cited by: 74
Author(s): Adler R. Dillman, Marissa Macchietto, Camille F. Porter, Alicia K. Rogers, Brian A. Williams, Igor Antoshechkin, Ming Min Lee, Z. Goodwin, Xiaojun Lu, Edwin E. Lewis, Heidi Goodrich-Blair, S. Patricia Stock, Byron J. Adams, Paul W. Sternberg, A Mortazavi
Software Mentions: 4
Published: about 9 years ago

10.1002/hbm.24213

Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems
Cited by: 66
Author(s): Jer-Fang Wu, Gia H. Ngo, Douglas N. Greve, J. Li, Tong He, Bruce Fischl, Simon B. Eickhoff, B.T. Thomas Yeo
Software Mentions: 4
Published: over 6 years ago

10.1038/sdata.2018.307

A functional connectome phenotyping dataset including cognitive state and personality measures
Cited by: 45
Author(s): Natacha Mendes, Sabine Oligschläger, Mark E. Lauckner, Johannes Golchert, Julia M. Huntenburg, Marcel Falkiewicz, Melissa Ellamil, Sarah Krause, Błażej M. Bączkowski, Roberto Cozatl, Anastasia Osoianu, Deniz Kumral, Jared Pool, Laura Golz, Maria V. Dreyer, Philipp Haueis, Rebecca Jost, Yelyzaveta Kramarenko, Haakon Engen, Katharina Ohrnberger, Krzysztof J. Gorgolewski, Nicolas Farrugia, Anahit Babayan, Andrea Reiter, H. Lina Schaare, Janis Reinelt, Josefin Röbbig, Marie Uhlig, Miray Erbey, Michael Gaebler, Jonathan Smallwood, Arno Villringer, Daniel S. Margulies
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.592422

Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens
Cited by: 3
Author(s): Noah A. Greenman, Sophie Jurgensen, Charles P. Holmes, Curtis Kapsak, Raechel E. Davis, William Maza, Desiree Edemba, Bethany A. Esser, Selena M. Hise, Tara N. Keen, Hunter G. Larson, Dominique J. Lockwood, Brian Wang, Joseph A. Harsh, James B. Herrick
Software Mentions: 3
Published: over 3 years ago

10.1111/1755-0998.13154

Chromosomal‐level reference genome of the incense tree <i>Aquilaria sinensis</i>
Cited by: 22
Author(s): Wenyan Nong, Sean T.S. Law, Hon Kit Wong, Tobias Baril, Thomas Swale, L.M. Chu, Alexander Hayward, David Tai-Wai Lau, Jerome H. L. Hui
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-244X-8-94

Investigation of G72 (DAOA) expression in the human brain
Cited by: 30
Author(s): Isabel Benzel, James N.C. Kew, Ramya Viknaraja, F. M. Kelly, Jacqueline de Belleroche, Steven R. Hirsch, Thirza H Sanderson, Peter R. Maycox
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12859-020-03877-9

Effect of APOE ε4 on multimodal brain connectomic traits: a persistent homology study
Cited by: 4
Author(s): Jin Li, Chenyuan Bian, Dandan Chen, Xianglian Meng, Haoran Luo, Hong Liang, Li Shen
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.5176

Age differences in head motion and estimates of cortical morphology
Cited by: 46
Author(s): Christopher R. Madan
Software Mentions: 2
Published: over 6 years ago

10.3389/fneur.2021.612177

Altered Functional Connectivity and Cognition Persists 4 Years After a Transient Ischemic Attack or Minor Stroke
Cited by: 6
Author(s): Korinne Nicolas, Peter Goodin, Milanka M. Visser, Patricia T. Michie, Andrew Bivard, Christopher Levi, Mark Parsons, Frini Karayanidis
Software Mentions: 2
Published: over 3 years ago

10.1002/erv.2686

Cortical morphometry in anorexia nervosa: An out‐of‐sample replication study
Cited by: 11
Author(s): Jenni Leppänen, Felicity Sedgewick, Valentina Cardi, Janet Treasure, Kate Tchanturia
Software Mentions: 1
Published: over 5 years ago

10.1002/hbm.22722

Morphometric MRI alterations and postoperative seizure control in refractory temporal lobe epilepsy
Cited by: 56
Author(s): Simon S. Keller, Mark P. Richardson, Jonathan O’Muircheartaigh, Jan-Christoph Schoene-Bake, Christian E. Elger, Bernd Weber
Software Mentions: 1
Published: over 9 years ago

10.3389/fneur.2018.00927

Manual Hippocampal Subfield Segmentation Using High-Field MRI: Impact of Different Subfields in Hippocampal Volume Loss of Temporal Lobe Epilepsy Patients
Cited by: 28
Author(s): José Eduardo Peixoto-Santos, Luciana Estefani Drumond de Carvalho, Ludmyla Kandratavicius, Paula Rejane Beserra Diniz, Renata Caldo Scandiuzzi, Roland Coras, Ingmar Blümcke, João Alberto Assirati, Carlos Gilberto Carlotti, Caio César Marconato Simões Matias, Carlos Ernesto Garrido Salmon, Antônio Carlos dos Santos, Tonicarlo Rodrigues Velasco, Márcio Flávio Dutra Moraes, João Pereira Leite
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnins.2018.00530

A Reproducible MEG/EEG Group Study With the MNE Software: Recommendations, Quality Assessments, and Good Practices
Cited by: 70
Author(s): Mainak Jas, Eric B. Larson, Denis A. Engemann, Jaakko Leppäkangas, Samu Taulu, Matti S. Hämäläinen, Alexandre Gramfort
Software Mentions: 1
Published: over 6 years ago

10.1093/scan/nsaa162

Hippocampal subfield alterations in pediatric patients with post-traumatic stress disorder
Cited by: 7
Author(s): Lei Li, Nanfang Pan, Lianqing Zhang, Su Lui, Xiaoqi Huang, Xin Xu, Song Wang, Du Lei, Lingjiang Li, Graham J. Kemp, Qiyong Gong
Software Mentions: 1
Published: almost 4 years ago