Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: rarefaction
https://packages.ecosyste.ms/registries/pypi.org/packages/rarefaction
Rarefaction and Accumulation for Metagenomic datasets
4 versions
Latest release: almost 3 years ago
12 downloads last month
Papers Mentioning rarefaction 7
10.1371/journal.pone.0232456
Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environmentCited by: 10
Author(s): Zohorul Islam, Thor Bech Johannesen, Berit Lilje, Tinna Ravnholt Urth, Anders Rhod Larsen, Øystein Angen, Jesper Larsen
Software Mentions: 5
Published: over 4 years ago
10.1186/1471-2105-15-76
Metavir 2: new tools for viral metagenome comparison and assembled virome analysisCited by: 185
Author(s): Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Software Mentions: 4
Published: over 10 years ago
10.7554/eLife.00458
Cohabiting family members share microbiota with one another and with their dogsCited by: 766
Author(s): Se Jin Song, Christian L. Lauber, Elizabeth K. Costello, Catherine Lozupone, Gregory Humphrey, Donna Berg-Lyons, J. Gregory Caporaso, Dan Knights, José C. Clemente, Sara Nakielny, Jeffrey I. Gordon, Noah Fierer, Rob Knight
Software Mentions: 3
Published: over 11 years ago
10.1002/mbo3.428
Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communitiesCited by: 61
Author(s): Christine N. Shulse, Brianne M. Maillot, Craig R. Smith, Matthew J. Church
Software Mentions: 3
Published: almost 8 years ago
10.1038/sdata.2017.81
Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonizationCited by: 8
Author(s): Léa Siegwald, Christophe Audebert, Gaël Even, Éric Viscogliosi, Ségolène Caboche, Magali Chabé
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2015.00739
Microbial community changes along the active seepage site of one cold seep in the Red SeaCited by: 8
Author(s): Huiluo Cao, Weipeng Zhang, Yong Wang, Pei‐Yuan Qian
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-018-28613-5
Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide depositsCited by: 26
Author(s): Yuchen Han, Giorgio Gonnella, Nicole Adam, Axel Schippers, Lia Burkhardt, Stefan Kurtz, Ulrich Schwarz-Schampera, Henrike Franke, Mirjam Perner
Software Mentions: 1
Published: over 6 years ago