Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pyliftover

https://packages.ecosyste.ms/registries/pypi.org/packages/pyliftover

Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
4 versions
Latest release: over 5 years ago
7 dependent packages
9,818 downloads last month

Papers Mentioning pyliftover 5

10.1371/journal.pgen.1009027

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Cited by: 5
Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik‐Jan Megens, Martien A. M. Groenen, Marcel J. T. Reinders, Mirte Bosse
Software Mentions: 6
Published: about 4 years ago

10.7717/peerj.10558

HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
Cited by: 1
Author(s): Hanna Kranas, Irina Tuszyńska, Bartek Wilczyński
Software Mentions: 4
Published: over 3 years ago

10.1093/database/baab032

MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses
Cited by: 15
Author(s): Sébastien A. Choteau, Audrey Wagner, Philippe Pierre, Lionel Spinelli, Catherine Brun
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00812

Back-Splicing Transcript Isoforms (Circular RNAs) Affect Biologically Relevant Pathways and Offer an Additional Layer of Information to Stratify NMIBC Patients
Cited by: 11
Author(s): Ankit Goel, Douglas G. Ward, Naheema S. Gordon, Ben Abbotts, Maurice P. Zeegers, Kar Keung Cheng, Nicholas D. James, Richard T. Bryan, Roland Arnold
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.120.401335

Quantifying Influences on Intragenomic Mutation Rate
Cited by: 7
Author(s): Helmut Simon, Gavin A. Huttley
Software Mentions: 2
Published: over 4 years ago