Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pyEMMA

https://packages.ecosyste.ms/registries/pypi.org/packages/pyEMMA

PyEMMA: Emma's Markov Model Algorithms
45 versions
Latest release: about 2 years ago
3 dependent packages
663 downloads last month

Papers Mentioning pyEMMA 9

10.1038/s41598-020-64034-z

Comparative Analyses of the Conformational Dynamics Between the Soluble and Membrane-Bound Cytokine Receptors
Cited by: 7
Author(s): Chao‐Yie Yang
Software Mentions: 3
Published: over 4 years ago

Distinct inactive conformations of the dopamine D2 and D3 receptors correspond to different extents of inverse agonism
Cited by: 28
Author(s): J. Robert Lane, Ara M. Abramyan, Pramisha Adhikari, Alastair C. Keen, Kuo-Hao Lee, Julie Sanchez, Ravi Kumar Verma, Herman D. Lim, Hideaki Yano, Jonathan A. Javitch, Lei Shi
Software Mentions: 3
Published: over 4 years ago

10.1007/s12551-016-0234-6

Analytical methods for structural ensembles and dynamics of intrinsically disordered proteins
Cited by: 15
Author(s): Marieke Schor, Antonia S. J. S. Mey, Cait E. MacPhee
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmolb.2020.00018

Dynamics Rationalize Proteolytic Susceptibility of the Major Birch Pollen Allergen Bet v 1
Cited by: 5
Author(s): Anna S. Kamenik, Florian Hofer, Philip H. Handle, Klaus R. Liedl
Software Mentions: 2
Published: over 4 years ago

10.3389/fmolb.2021.719320

Fibril Surface-Dependent Amyloid Precursors Revealed by Coarse-Grained Molecular Dynamics Simulation
Cited by: 2
Author(s): Yuan-Wei Ma, Tong‐You Lin, Ming-Yen Tsai
Software Mentions: 1
Published: about 3 years ago

10.3389/fmolb.2020.589718

EspcTM: Kinetic Transition Network Based on Trajectory Mapping in Effective Energy Rescaling Space
Cited by: 0
Author(s): Zhenyu Wang, Xin Zhou, Guanghong Zuo
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-76927-0

CMT-3 targets different α-synuclein aggregates mitigating their toxic and inflammogenic effects
Cited by: 12
Author(s): Florencia González‐Lizárraga, Diego Ploper, César L. Ávila, Sergio B. Socías, Maurício dos Santos Pereira, Belén Machín, Elaine Del‐Bel, Patrick P. Michel, Lı́a I. Pietrasanta, Rita Raisman‐Vozari, Rosana Chehı́n
Software Mentions: 1
Published: almost 4 years ago

10.3390/toxins9050164

Evaluation of Ochratoxin Recognition by Peptides Using Explicit Solvent Molecular Dynamics
Cited by: 6
Author(s): Aby A. Thyparambil, Ingrid Bazin, Anthony Guiseppi‐Elie
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules26010198

Binding Ensembles of p53-MDM2 Peptide Inhibitors by Combining Bayesian Inference and Atomistic Simulations
Cited by: 11
Author(s): Lijun Lang, Alberto Pérez
Software Mentions: 1
Published: over 3 years ago