Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pyBigWig
https://packages.ecosyste.ms/registries/pypi.org/packages/pyBigWig
A package for accessing bigWig files using libBigWig
37 versions
Latest release: over 1 year ago
15 dependent packages
35,952 downloads last month
Papers Mentioning pyBigWig 10
10.7554/eLife.65537
Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPACited by: 32
Author(s): Matthew T Parker, Katarzyna Knop, Vasiliki Zacharaki, Anna V. Sherwood, Daniel F. A. Tomé, Xuhong Yu, Pascal G.P. Martin, Jim Beynon, Scott D. Michaels, Geoffrey J. Barton, Gordon G. Simpson
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-017-09064-w
Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switchingCited by: 27
Author(s): Douglas C. Wu, Alan M. Lambowitz
Software Mentions: 8
Published: about 7 years ago
10.1128/mBio.03221-19
A Master Regulator of Bacteroides thetaiotaomicron Gut Colonization Controls Carbohydrate Utilization and an Alternative Protein Synthesis FactorCited by: 24
Author(s): Guy E. Townsend, Weiwei Han, Nathan D. Schwalm, Xinyu Hong, Natasha A. Bencivenga-Barry, Andrew L. Goodman, Eduardo A. Groisman
Software Mentions: 7
Published: over 4 years ago
10.1093/bioinformatics/btaa591
Epiviz File Server: Query, transform and interactively explore data from indexed genomic filesCited by: 4
Author(s): Jayaram Kancherla, Yifan Yang, Hyeyun Chae, Héctor Corrada Bravo
Software Mentions: 6
Published: about 4 years ago
10.1186/s13059-020-02247-1
Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.ppat.1009272
Nucleosome landscape reflects phenotypic differences in Trypanosoma cruzi life formsCited by: 10
Author(s): Alex Ranieri Jerônimo Lima, Christiane B. de Araujo, Saloê Bispo, José Salvatore Leister Patané, Ariel Mariano Silber, Maria Carolina Elias, Júlia Pinheiro Chagas da Cunha
Software Mentions: 4
Published: over 3 years ago
10.1186/s13059-019-1753-9
Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1Cited by: 63
Author(s): Daniel E. Martin‐Herranz, Erfan Aref‐Eshghi, Marc Jan Bonder, Thomas M. Stubbs, Sanaa Choufani, Rosanna Weksberg, Oliver Stegle, Bekim Sadiković, Wolf Reik, Janet M. Thornton
Software Mentions: 3
Published: about 5 years ago
10.1186/s13072-018-0177-1
Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cellsCited by: 36
Author(s): Andrea Coluccio, Gabriela Ecco, Julien Duc, Sandra Offner, Priscilla Turelli, Didier Trono
Software Mentions: 3
Published: over 6 years ago
10.1530/ERC-20-0464
Pan-genomic characterization of high-risk pediatric papillary thyroid carcinomaCited by: 10
Author(s): Adam Stenman, Samuel Backman, Klara Johansson, Johan O. Paulsson, Peter Stålberg, Jan Zedenius, Carl Christofer Juhlin
Software Mentions: 2
Published: over 3 years ago
10.3390/genes11010041
Local Epigenomic Data are more Informative than Local Genome Sequence Data in Predicting Enhancer-Promoter Interactions Using Neural NetworksCited by: 5
Author(s): Mengli Xiao, Zhong Zhuang, Wei Pan
Software Mentions: 1
Published: over 4 years ago