Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pomp

https://packages.ecosyste.ms/registries/pypi.org/packages/pomp

Screen scraping and web crawling framework
8 versions
Latest release: about 8 years ago
12 downloads last month

Papers Mentioning pomp 19

10.1371/journal.pone.0185528

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Cited by: 38
Author(s): Alexander D. Becker, Bryan T. Grenfell
Software Mentions: 8
Published: almost 7 years ago

Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination
Cited by: 13
Author(s): Alexander D. Becker, Amy Wesolowski, Ottar N. Bjørnstad, Bryan T. Grenfell
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1006646

Epithelial stratification shapes infection dynamics
Cited by: 11
Author(s): Carmen Lía Murall, Robert Jackson, Ingeborg Zehbe, Nathalie Boulle, Michel Segondy, Samuel Alizon
Software Mentions: 5
Published: over 5 years ago

10.1186/s12976-017-0063-8

Forecasting infectious disease emergence subject to seasonal forcing
Cited by: 27
Author(s): Paige B. Miller, Eamon B. O’Dea, Pejman Rohani, John M. Drake
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pcbi.1006710

An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections
Cited by: 30
Author(s): T. Alex Perkins, Robert C. Reiner, Guido España, Quirine A. ten Bosch, Amit Verma, Kelly A. Liebman, Valerie A. Paz-Soldán, John P. Elder, Amy C. Morrison, Steven T. Stoddard, Uriel Kitron, Gonzalo M. Vazquez‐Prokopec, Thomas W. Scott, David L. Smith
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1006204

Anticipating epidemic transitions with imperfect data
Cited by: 25
Author(s): Tobias Brett, Eamon B. O’Dea, Éric Marty, Paige B. Miller, Andrew Park, John M. Drake, Pejman Rohani
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0007482

Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure
Cited by: 24
Author(s): Guido España, Yutong Yao, Kathryn B. Anderson, Meagan C. Fitzpatrick, David L. Smith, Amy C. Morrison, Annelies Wilder‐Smith, Thomas W. Scott, T. Alex Perkins
Software Mentions: 3
Published: about 5 years ago

10.12688/f1000research.10624.3

Dose Titration Algorithm Tuning (DTAT) should supersede ‘the’ Maximum Tolerated Dose (MTD) in oncology dose-finding trials
Cited by: 6
Author(s): David C. Norris
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0198563

Maternal antibody and the maintenance of a lyssavirus in populations of seasonally breeding African bats
Cited by: 16
Author(s): David T. S. Hayman, Angela D. Luis, Olivier Restif, Kate S. Baker, Anthony R. Fooks, Clinton B. Leach, Daniel L. Horton, Richard Suu‐Ire, Andrew A. Cunningham, James L. N. Wood, Colleen T. Webb
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2334-13-187

Limits of patient isolation measures to control extended-spectrum beta-lactamase–producing Enterobacteriaceae: model-based analysis of clinical data in a pediatric ward
Cited by: 27
Author(s): Matthieu Domenech de Cellès, Jean‐Ralph Zahar, Véronique Abadie, Didier Guillemot
Software Mentions: 2
Published: over 11 years ago

10.1093/infdis/jiz644

Impact of Changes in Detection Effort on Control of Visceral Leishmaniasis in the Indian Subcontinent
Cited by: 12
Author(s): Luc E. Coffeng, Epke A. Le Rutte, Johanna Muñoz, Emily R. Adams, Joaquín M. Prada, Sake J. de Vlas, Graham F. Medley
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12879-018-3124-7

Summary results of the 2014-2015 DARPA Chikungunya challenge
Cited by: 35
Author(s): Sara Y. Del Valle, Benjamin H. McMahon, Jason Asher, Richard Hatchett, J. Lega, Heidi E. Brown, Mark E. Leany, Yannis Pantazis, David J. Roberts, Sean M. Moore, A. Townsend Peterson, Luis E. Escobar, Huijie Qiao, Nicholas Hengartner, Harshini Mukundan
Software Mentions: 2
Published: over 6 years ago

10.1093/biostatistics/kxy057

Model selection and parameter estimation for dynamic epidemic models via iterated filtering: application to rotavirus in Germany
Cited by: 32
Author(s): Theresa Stocks, Tom Britton, Michael Höhle
Software Mentions: 2
Published: almost 6 years ago

10.1093/cid/ciab210

Antibody and Antigen Prevalence as Indicators of Ongoing Transmission or Elimination of Visceral Leishmaniasis: A Modeling Study
Cited by: 6
Author(s): Luc E. Coffeng, Epke A. Le Rutte, Johanna Muñoz, Emily Adams, Sake J. de Vlas
Software Mentions: 2
Published: over 3 years ago

10.1038/srep11293

Interaction of Vaccination and Reduction of Antibiotic Use Drives Unexpected Increase of Pneumococcal Meningitis
Cited by: 13
Author(s): Matthieu Domenech de Cellès, Margarita Pons-Salort, Emmanuelle Varon, Marie-Anne Vibet, Caroline Ligier, Véronique Letort, Lulla Opatowski, Didier Guillemot
Software Mentions: 2
Published: over 9 years ago

10.1007/s12080-018-0390-3

Disentangling reporting and disease transmission
Cited by: 16
Author(s): Eamon B. O’Dea, John M. Drake
Software Mentions: 2
Published: about 6 years ago

10.1093/trstmh/trab012

Modelling the impact of COVID-19-related programme interruptions on visceral leishmaniasis in India
Cited by: 17
Author(s): Epke A. Le Rutte, Luc E. Coffeng, Johanna Muñoz, Sake J. de Vlas
Software Mentions: 2
Published: over 3 years ago

10.1101/2020.05.03.20089078

The impact of long-term non-pharmaceutical interventions on COVID-19 epidemic dynamics and control
Cited by: 18
Author(s): Marissa L. Childs, Morgan P. Kain, Dudley Kirk, Mallory Harris, Lisa I. Couper, Nicole Nova, Isabel Delwel, Jacob Ritchie, Erin A. Mordecai
Software Mentions: 2
Published: over 4 years ago

10.1101/2020.06.30.20143115

Chopping the tail: how preventing superspreading can help to maintain COVID-19 control
Cited by: 14
Author(s): Morgan P. Kain, Marissa L. Childs, Alexander D. Becker, Erin A. Mordecai
Software Mentions: 2
Published: about 4 years ago