Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pick
https://packages.ecosyste.ms/registries/pypi.org/packages/pick
Pick an option in the terminal with a simple GUI
28 versions
Latest release: about 2 years ago
46 dependent packages
101,106 downloads last month
Papers Mentioning pick 20
10.1128/mSystems.00174-16
Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern ChinaCited by: 89
Author(s): Bin Ma, Zhongmin Dai, Haizhen Wang, Melissa Dsouza, Xingmei Liu, Yan He, Jianjun Wu, Jorge L. Mazza Rodrigues, Jack A. Gilbert, Philip C. Brookes, Jianming Xu
Software Mentions: 8
Published: over 7 years ago
10.1002/ece3.4283
A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seasCited by: 47
Author(s): Abigail Cahill, John K. Pearman, Ángel Borja, Laura Carugati, Susana Carvalho, Roberto Danovaro, Sarah Dashfield, Romain David, Jean‐Pierre Féral, Sergej Olenin, Andrius Šiaulys, Paul J. Somerfield, Antoaneta Trayanova, María C. Uyarra, Anne Chenuil
Software Mentions: 6
Published: over 6 years ago
10.1038/srep21969
Culex quinquefasciatus larval microbiomes vary with instar and exposure to common wastewater contaminantsCited by: 27
Author(s): Marcus J. Pennington, Sean M. Prager, William E. Walton, John T. Trumble
Software Mentions: 6
Published: over 8 years ago
10.3389/fmicb.2018.02381
How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial CommunitiesCited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: about 6 years ago
10.3389/fimmu.2019.03014
Bacterial Exposure Mediates Developmental Plasticity and Resistance to Lethal Vibrio lentus Infection in Purple Sea Urchin (Strongylocentrotus purpuratus) LarvaeCited by: 12
Author(s): Nicholas W Schuh, Tyler J. Carrier, Catherine S. Schrankel, Adam M. Reitzel, Andreas Heyland, Jonathan P. Rast
Software Mentions: 5
Published: almost 5 years ago
10.1128/AEM.02992-18
Characterizing the Key Agents in a Disease-Suppressed Soil Managed by Reductive Soil DisinfestationCited by: 33
Author(s): Liang Liang Liu, Xinqi Huang, Jun Zhao, Jinbo Zhang, Zucong Cai
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2019.01519
Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous ForestsCited by: 57
Author(s): Amélie Dukunde, Dominik Schneider, M. Schmidt, Edzo Veldkamp, Rolf Daniel
Software Mentions: 5
Published: over 5 years ago
10.1038/srep26447
MetaTrans: an open-source pipeline for metatranscriptomicsCited by: 84
Author(s): Xavier Martínez, Marta Pozuelo, Victoria Pascal, David Campos, Marta Gut, Fernando Azpiroz, Francisco Guarner, Chaysavanh Manichanh
Software Mentions: 5
Published: over 8 years ago
10.3389/fpls.2017.01550
Oomycete Communities Associated with Reed Die-Back SyndromeCited by: 13
Author(s): Martina Cerri, Rumakanta Sapkota, Andrea Coppi, Valentina Ferri, Bruno Foggi, Daniela Gigante, Lorenzo Lastrucci, Roberta Selvaggi, Roberto Venanzoni, Mogens Nicolaisen, Francesco Ferranti, Lara Reale
Software Mentions: 4
Published: about 7 years ago
10.3389/fmicb.2020.00867
Chemically Stressed Bacterial Communities in Anaerobic Digesters Exhibit Resilience and Ecological FlexibilityCited by: 10
Author(s): Benjamin Schwan, Christian Abendroth, Adriel Latorre‐Pérez, Manuel Porcar, Cristina Vilanova, Christina Dornack
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-017-17830-z
Altered Gut Microbiota Profiles in Sows and Neonatal Piglets Associated with Porcine Epidemic Diarrhea Virus InfectionCited by: 33
Author(s): Deping Song, Qi Peng, Yanjun Chen, Xinrong Zhou, Fanfan Zhang, Anqi Li, Deng-Shing Huang, Qiong Wu, Yongsheng Yu, Hua He, Leyi Wang, Yuxin Tang
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0099949
Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine PampasCited by: 154
Author(s): Belén Carbonetto, Nicolás Rascovan, Roberto Álvarez, Alejandro Mentaberry, Martı́n Vázquez
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0130035
Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of CommunitiesCited by: 54
Author(s): Markus Majaneva, Kirsi Hyytiäinen, Sirkka-Liisa Varvio, Satoshi Nagai, Jaanika Blomster
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0214533
Fluorescent nucleic acid probe in droplets for bacterial sorting (FNAP-sort) as a high-throughput screening method for environmental bacteria with various growth ratesCited by: 13
Author(s): Yuichi Ota, Kanako Saito, Taeko Takagi, Satoko Matsukura, Masamune Morita, Satoshi Tsuneda, Naohiro Noda
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0141152
Microbial Contaminants of Cord Blood Units Identified by 16S rRNA Sequencing and by API Test System, and Antibiotic Sensitivity ProfilingCited by: 6
Author(s): Luís França, Catarina Simões, Marco Taborda, Catarina Diogo, Milton S. da Costa
Software Mentions: 2
Published: about 9 years ago
10.1186/s12866-020-01779-7
High-throughput sequencing study of the effect of transabdominal hysterectomy on intestinal flora in patients with uterine fibroidsCited by: 14
Author(s): Wantong Wang, Yibing Li, Qi‐Jun Wu, Xin Pan, Xiaozhou He, Xiaoxin Ma
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2016.00051
Human Microbiota of the Argentine Population- A Pilot StudyCited by: 12
Author(s): Belén Carbonetto, Mónica Fabbro, Mariela Sciara, Analía Seravalle, Guadalupe Méjico, Santiago Revale, Soledad Estrella, Bianca Brun, Marcelo Fay, Fabián Fay, Martı́n Vázquez
Software Mentions: 2
Published: almost 9 years ago
10.3389/fmicb.2019.00758
Marine Deep Biosphere Microbial Communities Assemble in Near-Surface Sediments in Aarhus BayCited by: 48
Author(s): Caitlin Petro, Birthe Zäncker, Piotr Starnawski, Lara Jochum, Timothy G. Ferdelman, Bo Barker Jørgensen, Hans Røy, Kasper Urup Kjeldsen, Andreas Schramm
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.243
PhyloSift: phylogenetic analysis of genomes and metagenomesCited by: 541
Author(s): Aaron E. Darling, Guillaume Jospin, Eric Lowe, F. A. Matsen, Holly M. Bik, Jonathan A. Eisen
Software Mentions: 2
Published: almost 11 years ago
10.1186/1471-2229-13-180
Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress responseCited by: 61
Author(s): Quan Zhang, Chuanzhi Zhao, Ming Li, Wei Sun, Yan Liu, Han Xia, Mingxuan Sun, Aiqin Li, Changsheng Li, Shuzhen Zhao, Lei Hou, Jean-François Picimbon, Xingjun Wang, Yanxiu Zhao
Software Mentions: 1
Published: about 11 years ago