pypi: picard | Projects | Ecosyste.ms: Papers

10.3389/fpls.2018.01049

Phenomic and Genomic Characterization of a Mutant Platform in Cucurbita pepo
Cited by: 21
Author(s): Alicia García, Encarnación Aguado, Genı́s Parra, Susana Manzano, Cecilia Martínez, Zoraida Megías, Gustavo Cebrián, Jonathan Romero, Sergi Beltrán, Dolores Garrido, Manuel Jamilena
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.572610

Pro-197-Ser Mutation in ALS and High-Level GST Activities: Multiple Resistance to ALS and ACCase Inhibitors in Beckmannia syzigachne
Cited by: 11
Author(s): Jingjing Wang, Jingchao Chen, Xiangju Li, Dan Li, Zheng Li, Hailan Cui
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2019.00577

Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis
Cited by: 18
Author(s): Tsuyoshi Tanaka, Goro Ishikawa, Eri Ogiso‐Tanaka, Takashi Yanagisawa, Kazuhiro Sato
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.53449

Germline burden of rare damaging variants negatively affects human healthspan and lifespan
Cited by: 12
Author(s): Anastasia V. Shindyapina, Aleksandr Zenin, Andrei E. Tarkhov, Didac Santesmasses, П. О. Федичев, Vadim N. Gladyshev
Software Mentions: 1
Published: over 4 years ago

10.3390/genes12010001

Whole Exome Sequencing Identifies Novel De Novo Variants Interacting with Six Gene Networks in Autism Spectrum Disorder
Cited by: 16
Author(s): Namshin Kim, Kyoung Hyoun Kim, Won Jun Lim, Jiwoong Kim, Soon Ae Kim, Hee Jeong Yoo
Software Mentions: 1
Published: over 3 years ago

10.1186/s12711-014-0063-7

Imputation of sequence level genotypes in the Franches-Montagnes horse breed
Cited by: 25
Author(s): Mirjam Frischknecht, Markus Neuditschko, Vidhya Jagannathan, Cord Drögemüller, Jens Tetens, Georg Thaller, Tosso Leeb, Stefan Rieder
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12711-016-0239-4

Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection
Cited by: 35
Author(s): Xing Guo, Qi Fang, Chendong Ma, B. Zhou, Yi Wan, Runshen Jiang
Software Mentions: 1
Published: about 8 years ago

10.1186/s13059-015-0790-2

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
Cited by: 163
Author(s): Stephen D. E. Park, David A. Magee, Paul A. McGettigan, Matthew D. Teasdale, Ceiridwen J. Edwards, Amanda J. Lohan, Alison Murphy, Martin Braud, Mark T.A. Donoghue, Yuan Liu, Andrew Chamberlain, Kévin Rue-Albrecht, Steven G. Schroeder, Charles Spillane, Shuaishuai Tai, Daniel G. Bradley, Tad S. Sonstegard, Brendan J. Loftus, David E. MacHugh
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.9755

Global RNA editome landscape discovers reduced RNA editing in glioma: loss of editing of gamma-amino butyric acid receptor alpha subunit 3 (GABRA3) favors glioma migration and invasion
Cited by: 12
Author(s): Vikas Patil, Jagriti Pal, Kulandaivelu Mahalingam, Kumaravel Somasundaram
Software Mentions: 1
Published: almost 4 years ago

10.1093/ve/veab078

Intra-host evolution during SARS-CoV-2 prolonged infection
Cited by: 58
Author(s): Carolina M. Voloch, Ronaldo da Silva Francisco, Luiz Gonzaga Paula de Almeida, Otávio J. B. Brustolini, Cynthia Chester Cardoso, Alexandra Lehmkuhl Gerber, Ana P. Guimarães, Isabela de Carvalho Leitão, Diana Mariani, Victor Akira Ota, Cristiano Xavier Lima, Mauro Martins Teixeira, Ana Carolina Fialho Dias, Rafael Mello Galliez, Débora S. Faffe, Luís Cristóvão Pôrto, Renato Santana Aguiar, Terezinha M P P Castiñeira, Orlando C. Ferreira, Amílcar Tanuri, Ana Tereza Ribeiro de Vasconcelos
Software Mentions: 1
Published: almost 3 years ago

10.1128/MRA.00736-21

Draft Genome Sequence of the Yeast Ogataea degrootiae Strain UCD465, Isolated from Soil in Ireland
Cited by: 1
Author(s): Eoin Ó Cinnéide, Max Jones, Elijah Bahate, E. S. Boyd, Rebeca Clavero, Harry Doherty, Izabela Drozdz, Maja Dumana, Cristina Gonzales, James Kennedy, Maria Khan, Sam Maher, Clare McGurk, Katherine Moreau, Ruby Neville, Jade Norton, Tadhg Ó Cróinı́n, Elizabeth O’Gorman, Juliana C. Olliff, Rhys Orimaco, Ellie Quinn, Sarah Webb Kennedy, Sean A Bergin, Kevin Byrne, Kenneth H. Wolfe, Geraldine Butler
Software Mentions: 1
Published: almost 3 years ago

10.1093/gbe/evaa255

Whole-Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou (Potos flavus) and Northern Raccoon (Procyon lotor)
Cited by: 4
Author(s): Mirian T. N. Tsuchiya, Rebecca B. Dikow, Klaus‐Peter Koepfli, Paul B. Frandsen, Larry L. Rockwood, Jesús E. Maldonado
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41439-018-0007-9

A novel 8-bp duplication in ADAT3 causes mild intellectual disability
Cited by: 15
Author(s): Ahmad Reza Salehi Chaleshtori, Noriko Miyake, Mohammad Ahmadvand, Oranous Bashti, Naomichi Matsumoto, Mehrdad Noruzinia
Software Mentions: 1
Published: over 6 years ago

10.1128/IAI.00102-19

Diversification and Evolution of Vancomycin-Resistant Enterococcus faecium during Intestinal Domination
Cited by: 31
Author(s): Krista Dubin, Deepti Mathur, Peter T. McKenney, Bradford P. Taylor, Eric R. Littmann, Jonathan U. Peled, Marcel R.M. van den Brink, Ying Taur, Eric G. Pamer, João B. Xavier
Software Mentions: 1
Published: about 5 years ago

10.1172/jci.insight.133434

LGR4 deficiency results in delayed puberty through impaired Wnt/β-catenin signaling
Cited by: 21
Author(s): Alessandra Mancini, Sasha Howard, Federica Marelli, Claudia Cabrera, Michael R. Barnes, Michael J.E. Sternberg, Morgane Leprovots, Irene Hadjidemetriou, Elena Monti, Alessia David, Karoliina Wehkalampi, Roberto Oleari, Antonella Lettieri, Valeria Vezzoli, Gilbert Vassart, Anna Cariboni, Marco Bonomi, M. Garcia, Leonardo Guasti, Leo Dunkel
Software Mentions: 1
Published: over 4 years ago

10.1074/jbc.RA120.014284

DoMY-Seq: A yeast two-hybrid–based technique for precision mapping of protein–protein interaction motifs
Cited by: 4
Author(s): Pau Castel, Ann Holtz-Morris, Yong-Won Kwon, Bernhard Suter, Frank McCormick
Software Mentions: 1
Published: over 3 years ago

10.1111/age.13089

Targeted sequencing reveals candidate causal variants for dairy bull subfertility
Cited by: 7
Author(s): Rostam Abdollahi-Arpanahi, Hendyel Aparecida Pacheco, Francisco Peñagaricano
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1006828

Identification of a novel protein complex essential for effector translocation across the parasitophorous vacuole membrane of Toxoplasma gondii
Cited by: 81
Author(s): Nicole D. Marino, Michael W. Panas, Magdalena Franco, Terence C. Theisen, Adit Naor, Suchita Rastogi, Kerry R. Buchholz, Hernán Lorenzi, John C. Boothroyd
Software Mentions: 1
Published: over 6 years ago

10.1186/s13104-019-4312-2

Monitoring dynamic cytotoxic chemotherapy response in castration-resistant prostate cancer using plasma cell-free DNA (cfDNA)
Cited by: 19
Author(s): Katherin Patsch, Naim Matasci, Anjana Soundararajan, Patricia Diaz, David B. Agus, Daniel Ruderman, Mitchell E. Gross
Software Mentions: 1
Published: over 5 years ago

10.1038/srep24650

Orthogonal NGS for High Throughput Clinical Diagnostics
Cited by: 14
Author(s): Niru Chennagiri, Eric J. White, Alexander Frieden, Edgar-Garza Lopez, Daniel S. Lieber, Anastasia Nikiforov, Tristen Ross, Rebecca Batorsky, Sherry Hansen, Va Lip, Lovelace J. Luquette, Evan Mauceli, David M. Margulies, Patrice M. Milos, Nichole M. Napolitano, Marcia M. Nizzari, Timothy W. Yu, John F. Thompson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28299

TCF7L1 Modulates Colorectal Cancer Growth by Inhibiting Expression of the Tumor-Suppressor Gene EPHB3
Cited by: 38
Author(s): Matthew Murphy, Satabdi Chatterjee, Sidharth Jain, Manpreet S. Katari, Ramanuj DasGupta
Software Mentions: 1
Published: about 8 years ago

10.1186/s12920-019-0483-x

Mutational load in carotid body tumor
Cited by: 9
Author(s): Anna V. Kudryavtseva, E. N. Lukyanova, D. V. Kalinin, Andrew R. Zaretsky, Anatoly V. Pokrovsky, Alexander L. Golovyuk, Maria S. Fedorova, Elena A. Pudova, Sergey L. Kharitonov, Vladislav Pavlov, Anastasiya A. Kobelyatskaya, Nataliya V. Melnikova, Alexey A. Dmitriev, A. Polyakov, B. Ya. Alekseev, Marina V. Kiseleva, А. Д. Каприн, George S. Krasnov, Anastasiya V. Snezhkina
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-19832-x

Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars
Cited by: 35
Author(s): Shiqiang Xu, Jihua Wang, Heyang Shang, Ya Huang, Wei Yao, Baoshan Chen, Muqing Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12881-018-0541-9

Expansion of phenotypic spectrum of MYO15A pathogenic variants to include postlingual onset of progressive partial deafness
Cited by: 22
Author(s): Mun Seog Chang, Chung Lee, Jin Hee Han, Min Young Kim, Hye Rim Park, Nayoung Kim, Woong-Yang Park, Doo Yi Oh, Byung Yoon Choi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-31349-x

Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model
Cited by: 6
Author(s): Yoshimasa Aoto, Kazuhiro Okumura, Tsuyoshi Hachiya, Sumitaka Hase, Yuichi Wakabayashi, Fuyuki Ishikawa, Yasubumi Sakakibara
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34202-3

New insights into tomato microRNAs
Cited by: 18
Author(s): Thaís Cunha de Sousa Cardoso, Tamires Caixeta Alves, Carolina Milagres Caneschi, Douglas dos Reis Gomes Santana, Christiane Noronha Fernandes-Brum, Gabriel Lasmar dos Reis, Matheus Martins Daúde, Thales Henrique Cherubino Ribeiro, Miguel Mauricio Díaz Gómez, André Almeida Lima, Luíz Antônio Augusto Gomes, Marcos de Souza Gomes, Peterson Elizandro Gandolfi, Laurence Rodrigues do Amaral, Antônio Chalfun-Júnior, Wilson Roberto Maluf, Matheus de Souza Gomes
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186950

Immunohistochemistry and Mutation Analysis of SDHx Genes in Carotid Paragangliomas
Cited by: 12
Author(s): Anastasiya V. Snezhkina, D. V. Kalinin, Vladislav Pavlov, E. N. Lukyanova, Alexander L. Golovyuk, Maria Fedorova, Elena A. Pudova, М. В. Савватеева, О. А. Степанов, Andrey Poloznikov, Т. Б. Демидова, Nataliya V. Melnikova, Alexey A. Dmitriev, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-021-07511-7

Episodes of gene flow and selection during the evolutionary history of domesticated barley
Cited by: 9
Author(s): Peter Civáň, Konstantina Drosou, David Armisen-Gimenez, Wandrille Duchemin, Jérôme Salse, Terence A. Brown
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85644-1

Bulked segregant analysis reveals candidate genes responsible for dwarf formation in woody oilseed crop castor bean
Cited by: 10
Author(s): Zaiqing Wang, Anmin Yu, Fĕi Li, Wei Xu, Bing Han, Xuejiao Cheng, Aizhong Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-020-06940-0

Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role
Cited by: 1
Author(s): José Alfredo Samaniego Castruita, Michael V. Westbury, Eline D. Lorenzen
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-015-2338-y

Transcriptomes of newly-isolated Trypanosoma brucei rhodesiense reveal hundreds of mRNAs that are co-regulated with stumpy-form markers
Cited by: 11
Author(s): Julius Mulindwa, Clémentine Mercé, Enock Matovu, John Enyaru, Christine Clayton
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00663-19

Common Variants in the Glycerol Kinase Gene Reduce Tuberculosis Drug Efficacy
Cited by: 74
Author(s): Michelle M. Bellerose, Seung‐Hun Baek, Chuan Huang, Caitlin E. Moss, Eun Ik Koh, Megan K. Proulx, Clare M. Smith, Richard E. Baker, Jong Seok Lee, Seok-Yong Eum, Sung Jae Shin, Sang Nae Cho, Megan Murray, Christopher M. Sassetti
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-020-6736-4

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds
Cited by: 24
Author(s): Xunhe Huang, Newton O. Otecko, Min‐Sheng Peng, Zhuoxian Weng, Weina Li, Jiebo Chen, Ming Zhong, Zhong Fang, Sihua Jin, Geng Zhao, Wei Luo, Danlin He, Cheng Ma, Jianlin Han, Sheila Ommeh, Yaping Zhang, Xiquan Zhang, Bin Du
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00276-19

Translocation of Dense Granule Effectors across the Parasitophorous Vacuole Membrane in Toxoplasma- Infected Cells Requires the Activity of ROP17, a Rhoptry Protein Kinase
Cited by: 39
Author(s): Michael W. Panas, Abel Ferrel, Adit Naor, Elizabeth Tenborg, Hernan Lorenzi, John C. Boothroyd
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-6376-8

Comparative population genomics reveals genetic divergence and selection in lotus, Nelumbo nucifera
Cited by: 11
Author(s): Ye Li, Fenglin Zhu, Xianwei Zheng, Manli Hu, Chen Dong, Ying Diao, Youwei Wang, Keqin Xie, Zhongli Hu
Software Mentions: 1
Published: over 4 years ago

10.1007/s00439-020-02204-9

A Southeast Asian origin for present-day non-African human Y chromosomes
Cited by: 13
Author(s): Pille Hallast, A. T. Agdzhoyan, Oleg Balanovsky, Yali Xue, Chris Tyler‐Smith
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.7032

Whole exome and targeted deep sequencing identify genome-wide allelic loss and frequent SETDB1 mutations in malignant pleural mesotheliomas
Cited by: 42
Author(s): Hio Chung Kang, Hong Kwan Kim, Sharon Lee, Pedro Rafael Casado Méndez, James Wansoo Kim, Gavitt A. Woodard, Jun Hee Yoon, Kuang-Yu Jen, Li Tai Fang, Kirk D. Jones, David M. Jablons, Il Jin Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s12863-020-0807-z

Accumulation of genetic variants associated with immunity in the selective breeding of broilers
Cited by: 13
Author(s): Angela E. Zou, Kerry Nadeau, Pauline W. Wang, Jee Yeon Lee, David S. Guttman, Shayan Sharif, D. R. Korver, John H. Brumell, John Parkinson
Software Mentions: 1
Published: over 4 years ago

10.1093/cid/ciz069

Children With Cystic Fibrosis Are Infected With Multiple Subpopulations of Mycobacterium abscessus With Different Antimicrobial Resistance Profiles
Cited by: 30
Author(s): Liam P. Shaw, Ronan Doyle, Ema Kavaliūnaitė, Helen Spencer, François Balloux, Garth Dixon, Kathryn Harris
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-018-4459-6

PDXliver: a database of liver cancer patient derived xenograft mouse models
Cited by: 20
Author(s): Sheng He, Bo Hu, Chao Li, Ping Lin, Wei‐Guo Tang, Yun-Fan Sun, Fangyoumin Feng, Guo Wei, Jia Li, Yang Xu, Qianlan Yao, Xin Zhang, Shuang–Jian Qiu, Jian Zhou, Jia Fan, Yixue Li, Hong Li, Xin‐Rong Yang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2018.12.058

Transcriptome data of cultivated tetraploid and hexaploid wheat variety during grain development
Cited by: 3
Author(s): Pranab Kumar Mandal, Shubham Rai, Megha Kaushik, S. K. Sinha, Rajesh Kumar Gupta, A. Mahendru
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0158642

Genome-wide Association Study Identifies Loci for the Polled Phenotype in Yak
Cited by: 14
Author(s): Chunnian Liang, Lizhong Wang, Xiaoyun Wu, Kun Wang, Xuezhi Ding, Mingcheng Wang, Min Chen, Xiaofeng Xie, Qiang Qiu, Ping Yan
Software Mentions: 1
Published: about 8 years ago

10.1155/2019/5946461

Whole-Genome Sequencing Identifies the Egl Nine Homologue 3 (egln3/phd3) and Protein Phosphatase 1 Regulatory Inhibitor Subunit 2 (PPP1R2P1) Associated with High-Altitude Polycythemia in Tibetans at High Altitude
Cited by: 4
Author(s): Luobu Gesang, Lamu Gusang, Ciren Dawa, Gawa Gesang, Kang Li
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: picard

Papers Mentioning picard 243