pypi: perl | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-6-23

Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
Cited by: 251
Author(s): Mauricio La Rota, Ramesh V. Kantety, Ju‐Kyung Yu, Mark E. Sorrells
Software Mentions: 1
Published: almost 20 years ago

10.1186/s13018-020-02148-w

Investigating the molecular control of deer antler extract on articular cartilage
Cited by: 7
Author(s): Baojin Yao, Zhenwei Zhou, Mei Zhang, Xiangyang Leng, Daqing Zhao
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-12-282

Comparative genomics of four closely related Clostridium perfringens bacteriophages reveals variable evolution among core genes with therapeutic potential
Cited by: 25
Author(s): Brian B. Oakley, Eldin Talundzic, Cesar A. Morales, Kelli L. Hiett, Gregory R. Siragusa, Nikolay V. Volozhantsev, Bruce S. Seal
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-8-90

De novo identification of LTR retrotransposons in eukaryotic genomes
Cited by: 75
Author(s): Mina Rho, Jeong Hyeon Choi, Sun Kim, Michael Lynch, Haixu Tang
Software Mentions: 1
Published: over 17 years ago

10.1186/s12864-018-4875-7

Genome sequence and effectorome of Moniliophthora perniciosa and Moniliophthora roreri subpopulations
Cited by: 17
Author(s): Ceslaine Santos Barbosa, Rute R. da Fonseca, Thiago Mafra Batista, Mariana Araújo Barreto, Caio Suzart Argolo, Mariana Rocha de Carvalho, Daniel Oliveira Jordão do Amaral, Edson Mário de Andrade Silva, Enrique Arévalo‐Gardini, Karina Solís Hidalgo, Glória Regina Franco, Carlos Priminho Pirovani, Fabienne Micheli, Karina Peres Gramacho
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-8-133

A population study of the minicircles in Trypanosoma cruzi: predicting guide RNAs in the absence of empirical RNA editing
Cited by: 31
Author(s): Sean Thomas, LL Isadora Trejo Martinez, Scott J. Westenberger, Nancy R. Sturm
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-12-116

High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum
Cited by: 23
Author(s): Upeka Samarakoon, Allison Regier, Aiping Tan, Brian Desany, Brendan Collins, John C. Tan, Scott J. Emrich, Michael T. Ferdig
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-11-604

A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Cited by: 76
Author(s): Roland Schafleitner, Luz Tincopa, Omar Palomino, Genoveva Rossel, Ronald Robles, Rocio Alagon, Carlos Rivera, Cynthia Quispe, Luís Rojas, Jaime A Pacheco, Julio Solis, Diogenes Cerna, Ji Young Kim, Jack P. Hou, Reinhard Simon
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-12-311

Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)
Cited by: 29
Author(s): Gloria L. Fawcett, Muthuswamy Raveendran, David Rio Deiros, David Chen, Fuli Yu, R. Alan Harris, Yanru Ren, Donna M. Muzny, Jeffrey G. Reid, David A. Wheeler, Kim C. Worley, Steven E. Shelton, Ned H. Kalin, Aleksandar Milosavljevic, Richard A. Gibbs, Jeffrey Rogers
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-14-432

Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping
Cited by: 14
Author(s): Vandana Kumari, Lakshmi Rani Iyer, Rajarshi Roy, Varsha Bhargava, Suchita Panda, Jaishree Paul, Jaco J. Verweij, C. Graham Clark, Alok Bhattacharya, Sudha Bhattacharya
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-1369-8

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts
Cited by: 23
Author(s): Chao Li Huang, Pei Hua Pu, Hao Huang, Huang Mo Sung, Hungjiun Liaw, Yi Min Chen, Chien‐Ming Chen, Ming Ban Huang, Naoki Osada, Takashi Gojobori, Tun‐Wen Pai, Yu Tin Chen, Chyi Hwang, Tzen‐Yuh Chiang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep33616

Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea
Cited by: 33
Author(s): Ram Srivastava, Deepak Bajaj, Ayushi Malik, Mohar Singh, Swarup K. Parida
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-14-430

Genetic variability of mutans streptococci revealed by wide whole-genome sequencing
Cited by: 31
Author(s): Lifu Song, Weiwei Wang, Georg Conrads, Anke Rheinberg, Helena Sztajer, Michael Reck, Irene Wagner‐Döbler, An‐Ping Zeng
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-11-113

SoyTEdb: a comprehensive database of transposable elements in the soybean genome
Cited by: 122
Author(s): Jing Du, David Grant, Zhixi Tian, Rex T. Nelson, Liucun Zhu, Randy C. Shoemaker, Jianxin Ma
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-15-241

De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda
Cited by: 11
Author(s): Vera B. Kaiser, Doris Bachtrog
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-15-233

A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication
Cited by: 63
Author(s): Kai Wang, Kazuharu Nomura, Atushi Fujiwara, Yoji Nakamura, Motoshige Yasuike, Nobuhiko Ojima, Tetsuji Masaoka, Akiyuki Ozaki, Yukinori Kazeto, Gén Kobashi, Jiro Nagao, Hideki Tanaka, Takanori Kobayashi, Mitsuru Ototake
Software Mentions: 1
Published: over 10 years ago

10.1038/srep37351

SUMO-specific protease 3 is a key regulator for hepatic lipid metabolism in non-alcoholic fatty liver disease
Cited by: 10
Author(s): Yuhan Liu, Fei Yu, Yu Han, Qing Li, Zhujun Cao, Xiaogang Xiang, Shaosong Jiang, Xiaolin Wang, Jie Lu, Rongtao Lai, Hui Wang, Wei Cai, Shisan Bao, Qing Xie
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-11-172

Myosin individualized: single nucleotide polymorphisms in energy transduction
Cited by: 7
Author(s): Thomas P. Burghardt, Kevin L. Neff, Eric D. Wieben, Katalin Ajtai
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-017-3682-x

Genome-wide comparative analysis of NBS-encoding genes in four Gossypium species
Cited by: 23
Author(s): Liuxin Xiang, Jinggao Liu, Chaofeng Wu, Yushan Deng, Chaowei Cai, Xiao Zhang, Yingfan Cai
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-2610-9

Transcription factors in microalgae: genome-wide prediction and comparative analysis
Cited by: 45
Author(s): Stanislas Thiriet-Rupert, Grégory Carrier, Benoı̂t Chénais, Camille Trottier, Gaël Bougaran, Jean‐Paul Cadoret, Benoı̂t Schoefs, Bruno Saint‐Jean
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-9-516

Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
Cited by: 230
Author(s): Priya Duggal, Elizabeth M. Gillanders, Taura N. Holmes, Joan E. Bailey-Wilson
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-6-74

Linkage mapping bovine EST-based SNP
Cited by: 61
Author(s): W. M. Snelling, Eduardo Casas, R. T. Stone, J. W. Keele, Gregory P Harhay, G. L. Bennett, Timothy P. L. Smith
Software Mentions: 1
Published: over 19 years ago

10.1038/srep38215

Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae
Cited by: 24
Author(s): Xiaoyu Cheng, Bin He, Lin Chen, Shuqi Xiao, Jian Fu, Yue Chen, Tong Yu, Zhihui Cheng, Feng Hong
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-8-351

SAMMD: Staphylococcus aureus Microarray Meta-Database
Cited by: 48
Author(s): Vijayaraj Nagarajan, Mohamed O. Elasri
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-018-5218-4

Comparative genomics of nuclear envelope proteins
Cited by: 9
Author(s): Hita Sony Garapati, Krishnaveni Mishra
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-12-70

Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
Cited by: 52
Author(s): J. Davie, Julie Earl, Stefan P. W. de Vries, Azad Ahmed, Fang Hu, Hester J. Bootsma, Kim Stol, Peter W. M. Hermans, Robert M. Wadowsky, Garth D. Ehrlich, John P. Hays, Anthony A. Campagnari
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-14-145

The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosisfrom cynomolgus macaque infection
Cited by: 19
Author(s): Mark N Ragheb, Christopher B. Ford, Michael R. Chase, Philana Ling Lin, JoAnne L. Flynn, Sarah M. Fortune
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-14-521

Segmental duplications in the silkworm genome
Cited by: 16
Author(s): Qian Zhao, Zhenglin Zhu, Masahiro Kasahara, Shinichi Morishita, Ze Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-2217-6

A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies
Cited by: 29
Author(s): Juexin Wang, Trupti Joshi, Babu Valliyodan, Shi Hai-ying, Yanchun Liang, Henry T. Nguyen, Jing Zhang, Dong Xu
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-9-326

Immunity related genes in dipterans share common enrichment of AT-rich motifs in their 5' regulatory regions that are potentially involved in nucleosome formation
Cited by: 3
Author(s): Jesús Hernández-Romano, Francisco J Carlos-Rivera, Heladia Salgado, Héctor Lamadrid‐Figueroa, Verónica Valverde-Garduño, Mario H. Rodrı́guez, Jesús Martínez-Barnetche
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-10-376

Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
Cited by: 54
Author(s): Jamie A. O’Rourke, Rex T. Nelson, David Grant, Jeremy Schmutz, Jane Grimwood, Steven B. Cannon, Carroll P. Vance, Michelle A. Graham, Randy C. Shoemaker
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-8-23

Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution
Cited by: 81
Author(s): David Laperrière, Tian Tian Wang, John H. White, Sylvie Mader
Software Mentions: 1
Published: almost 18 years ago

10.1128/AAC.01550-17

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis
Cited by: 74
Author(s): Jan Heyckendorf, Sönke Andres, Claudio U. Köser, Ioana D. Olaru, Thomas Schön, Erik Sturegård, Patrick Beckert, Viola Schleusener, Thomas A. Kohl, Doris Hillemann, Danesh Moradigaravand, Julian Parkhill, Sharon J. Peacock, Stefan Niemann, Christoph Lange, Matthias Merker
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-10-158

Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
Cited by: 62
Author(s): Feng Ding, Petrus Tang, Mei‐Hua Hsu, Peng Cui, Songnian Hu, Jun Yu, Cheng-Hsun Chiu
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-015-1371-1

Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus
Cited by: 32
Author(s): Ning Zhang, Linan Zhang, Ye Tao, Li Guo, Juan Sun, Xia Li, Nan Zhao, Jie Peng, Xiaojie Li, Liang Zeng, Jinsa Chen, Guanpin Yang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-3457-9

A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola
Cited by: 37
Author(s): Ester Alvarenga Santos Buiate, Kátia Viana Xavier, Neil Moore, María Fernanda Torres, Mark L. Farman, Christopher L. Schardl, Lisa J. Vaillancourt
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-13-172

Expansion of CORE-SINEs in the genome of the Tasmanian devil
Cited by: 10
Author(s): Maria A. Nilsson, Axel Janke, Elizabeth P. Murchison, Zemin Ning, Björn M. Hallström
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-10-317

Identification and characterization of pseudogenes in the rice gene complement
Cited by: 58
Author(s): Françoise Thibaud‐Nissen, Shuai Ouyang, C. Robin Buell
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-020-06931-1

Transcriptome analysis provides insights into the non-methylated lignin synthesis in Paphiopedilum armeniacum seed
Cited by: 19
Author(s): Lin Fang, Xin Xu, Ji Li, Zhong‐Ping Feng, Mingzhi Li, Jingwei Yan, Yuan Li, Xinhua Zhang, Lin Li, Guohua Ma, Aying Zhang, LV Fu-bing, Kunlin Wu, Songjun Zeng
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-5-73

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant
Cited by: 96
Author(s): Lila O. Vodkin, Anupama Khanna, Robin T. Shealy, Steven J. Clough, Delkin O. Gonzalez, Reena Philip, Gracia Zabala, Françoise Thibaud‐Nissen, Mark Sidarous, Martina V. Strömvik, Elizabeth Shoop, Christina Schmidt, Ernest F. Retzel, John E. Erpelding, Randy C. Shoemaker, Alicia Rodríguez‐Huete, Joseph C. Polacco, Virginia H. Coryell, Paul Keim, George Gong, Lei Liu, José R. Pardinas, Peter A. Schweitzer
Software Mentions: 1
Published: about 20 years ago

10.1186/1471-2105-12-S10-S4

HOMER: a human organ-specific molecular electronic repository
Cited by: 17
Author(s): Fan Zhang, Jake Y. Chen
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-11-716

New methods for next generation sequencing based microRNA expression profiling
Cited by: 86
Author(s): Henk P.J. Buermans, Yavuz Ariyürek, Gert-Jan van Ommen, Johan T. den Dunnen, Peter A C ‘t Hoen
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms150711245

Elucidating Polypharmacological Mechanisms of Polyphenols by Gene Module Profile Analysis
Cited by: 10
Author(s): Bin Li, Min Xiong, Hongyu Zhang
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-00617-7

Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton
Cited by: 22
Author(s): Caiping Cai, Shuang Wu, Erli Niu, Chaoze Cheng, Wangzhen Guo
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-782

High presence/absence gene variability in defense-related gene clusters of Cucumis melo
Cited by: 30
Author(s): Víctor González, Núria Aventín, Emilio Centeno, Pere Puigdomènech
Software Mentions: 1
Published: about 11 years ago

10.1186/s12864-019-5782-2

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture
Cited by: 51
Author(s): Camus Nimmo, Liam Shaw, Ronan Doyle, Rachel Williams, Kayleen Brien, Carrie Burgess, Judith Breuer, François Balloux, Alexander S. Pym
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2172-10-3

Immunome Knowledge Base (IKB): An integrated service for immunome research
Cited by: 35
Author(s): Csaba Ortutay, Mauno Vihinen
Software Mentions: 1
Published: almost 16 years ago

10.3389/fmicb.2018.00557

Identification of Unequally Represented Founder Viruses Among Tissues in Very Early SIV Rectal Transmission
Cited by: 1
Author(s): Jian Chen, Yanqin Ren, Lance Daharsh, Lu Liu, Guobin Kang, Qingsheng Li, Qiang Wang, Yanmin Wan, Jianqing Xu
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2199-11-30

Quantitative polymerase chain reaction analysis by deconvolution of internal standard
Cited by: 2
Author(s): Yasuko Hirakawa, Rheem D. Medh, Stan Metzenberg
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-12-28

Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
Cited by: 63
Author(s): She Tang, Yu Wang, Zefeng Li, Gui Shuang Ying, Bingguang Xiao, Jiahua Xie, Qian‐Hao Zhu, Longjiang Fan
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-3559-z

High flavonoid accompanied with high starch accumulation triggered by nutrient starvation in bioenergy crop duckweed (Landoltia punctata)
Cited by: 26
Author(s): Tao Xiang, Yang Fang, Mengjun Huang, Yao Xiao, Yang Liu, Xinrong Ma, Hai Zhao
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-016-0950-x

Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)
Cited by: 37
Author(s): Sathish Kumar Ponniah, Jyothi Thimmapuram, Ketaki P. Bhide, Venu Kalavacharla, Muthusamy Manoharan
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2229-14-60

A diverse set of miRNAs responsive to begomovirus-associated betasatellite in Nicotiana benthamiana
Cited by: 20
Author(s): Bingguang Xiao, Xiuling Yang, Chu-Yu Ye, Yang Liu, Chenhai Yan, Yu Wang, Xiaoxuan Lu, Yongping Li, Longjiang Fan
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-017-3904-2

Molecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes
Cited by: 29
Author(s): Marco Pessoa-Filho, António A. Martins, Márcio Elias Ferreira
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-019-2007-4

NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice
Cited by: 7
Author(s): Ke Chen, Tao Guo, Xinmin Li, Yibing Yang, Nai-Qian Dong, Chuan-Lin Shi, Wang-Wei Ye, Jun-Xiang Shan, Hong‐Xuan Lin
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-22699-7

Genetic diversity of the enterohaemolysin gene (ehxA) in non-O157 Shiga toxin-producing Escherichia coli strains in China
Cited by: 9
Author(s): Songzhe Fu, Xiangning Bai, Ruyue Fan, Hui Sun, Yun Xu, Yanwen Xiong
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-016-0820-6

sHSPdb: a database for the analysis of small Heat Shock Proteins
Cited by: 17
Author(s): Emmanuel Jaspard, Gilles Hunault
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-018-1536-6

Foreign cry1Ac gene integration and endogenous borer stress-related genes synergistically improve insect resistance in sugarcane
Cited by: 20
Author(s): Dinggang Zhou, Xiaolan Liu, Shaopei Gao, Jinlong Guo, Yachun Su, Hui Ling, Chunfeng Wang, Li Zhu, Liping Xu, Youxiong Que
Software Mentions: 1
Published: almost 6 years ago

10.1186/1753-6561-8-S1-S16

Imputation in families using a heuristic phasing approach
Cited by: 3
Author(s): August Blackburn, Angela K Dean, Donna M. Lehman
Software Mentions: 1
Published: over 10 years ago

10.1186/1756-0500-3-51

An efficient method for developing SNP markers based on EST data combined with high resolution melting (HRM) analysis
Cited by: 18
Author(s): Tokuko Ujino‐Ihara, Yuriko Taguchi, Yoshinari Moriguchi, Yoshihiko Tsumura
Software Mentions: 1
Published: over 14 years ago

10.1186/1756-0500-5-398

Evolutionary patterns of RNA-based gene duplicates in Caenorhabditis nematodes coincide with their genomic features
Cited by: 7
Author(s): Ming Zou, Guoxiu Wang, Shunping He
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-0500-3-320

A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data
Cited by: 20
Author(s): Benjamin Merget, Matthias Wolf
Software Mentions: 1
Published: almost 14 years ago

10.1186/1756-0500-3-3

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies
Cited by: 41
Author(s): Ram Vinay Pandey, Viola Nolte, Christian Schlötterer
Software Mentions: 1
Published: almost 15 years ago

10.1186/1756-0500-5-472

Mutual information and variants for protein domain-domain contact prediction
Cited by: 6
Author(s): Mireille Gomes, Rebecca Hamer, Gesine Reinert, Charlotte M. Deane
Software Mentions: 1
Published: about 12 years ago

10.1186/1472-6807-9-25

Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis
Cited by: 16
Author(s): Hemajit Singh, Shandar Ahmad
Software Mentions: 1
Published: almost 16 years ago

10.1186/1472-6807-11-35

Evolutionary traces decode molecular mechanism behind fast pace of myosin XI
Cited by: 2
Author(s): Divya P. Syamaladevi, Ramanathan Sowdhamini
Software Mentions: 1
Published: almost 14 years ago

10.1186/1472-6807-14-9

Structural interrogation of phosphoproteome identified by mass spectrometry reveals allowed and disallowed regions of phosphoconformation
Cited by: 9
Author(s): Arun Kumar Somavarapu, Satish Balakrishnan, Amit Gautam, David Scott Palmer, Prasanna Venkatraman
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-24301-6

Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi
Cited by: 19
Author(s): Ning Zhang, Guohong Cai, Dana C. Price, Jo Anne Crouch, Pierre Gladieux, Bradley I. Hillman, Chang Hyun Khang, Marc‐Henri Lebrun, Yong-Hwan Lee, Jing Luo, Huan Qiu, Daniel Veltri, Jennifer H. Wisecaver, Jie Zhu, Debashish Bhattacharya
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-8-392

Exonization of active mouse L1s: a driver of transcriptome evolution?
Cited by: 34
Author(s): Tomasz Żemojtel, Tobias Penzkofer, Jörg Schultz, Thomas Dandekar, Richard M. Badge, Martin Vingron
Software Mentions: 1
Published: almost 18 years ago

10.1186/1745-6150-8-20

Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems
Cited by: 55
Author(s): L. Aravind, Swadha Anand, Lakshminarayan M. Iyer
Software Mentions: 1
Published: over 11 years ago

10.1098/rsbl.2013.0879

Parasites that change predator or prey behaviour can have keystone effects on community composition
Cited by: 60
Author(s): Melanie J. Hatcher, Jaimie T. A. Dick, Alison M. Dunn
Software Mentions: 1
Published: almost 11 years ago

10.3390/biom9080374

Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973
Cited by: 12
Author(s): Aparna Nagarajan, Mowei Zhou, Amelia Y. Nguyen, Michelle Liberton, Komal Kedia, Tujin Shi, Paul Piehowski, Anil Shukla, Thomas Fillmore, Carrie Nicora, Richard Smith, David W. Koppenaal, Jon Jacobs, Himadri B. Pakrasi
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-12-395

Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer
Cited by: 35
Author(s): Therese Håfström, Désirée S. Jansson, Bo Segerman
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-25233-x

Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype
Cited by: 69
Author(s): Xiangning Bai, Songzhe Fu, Ji Zhang, Ruyue Fan, Yun Xu, Hui Sun, Xiaohua He, Jianguo Xu, Yongqiang Xiong
Software Mentions: 1
Published: over 6 years ago

10.1186/1475-2875-8-285

A microarray-based system for the simultaneous analysis of single nucleotide polymorphisms in human genes involved in the metabolism of anti-malarial drugs
Cited by: 8
Author(s): Eva Maria Hodel, Serej D. Ley, Weihong Qi, Frédéric Ariey, Blaise Genton, Hans‐Peter Beck
Software Mentions: 1
Published: almost 15 years ago

10.1007/s00335-012-9437-8

Presphenoidal synchondrosis fusion in DBA/2J mice
Cited by: 3
Author(s): Allysa Claire Adams, Brandeis McBratney‐Owen, Brittany Newby, Margot E. Bowen, Bjørn R. Olsen, Matthew L. Warman
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-10-515

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights
Cited by: 16
Author(s): Na Liu, Zhilong Xiao, Chun Hong Yu, Pengfei Shao, Yin Liang, Daogang Guan, Jian Yang, Chun-Long Chen, Liang‐Hu Qu, Hui Zhou
Software Mentions: 1
Published: about 15 years ago

10.1038/s41598-018-26311-w

Metagenomic insights into the microbial diversity in manganese-contaminated mine tailings and their role in biogeochemical cycling of manganese
Cited by: 60
Author(s): Shreya Ghosh, Alok Prasad Das
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-10-367

Complexity of the MSG gene family of Pneumocystis carinii
Cited by: 37
Author(s): Scott P. Keely, James R. Stringer
Software Mentions: 1
Published: almost 16 years ago

10.1093/molbev/msaa221

Colocality to Cofunctionality: Eukaryotic Gene Neighborhoods as a Resource for Function Discovery
Cited by: 14
Author(s): Fatima Foflonker, Crysten E. Blaby‐Haas
Software Mentions: 1
Published: about 4 years ago

10.1093/molbev/msu058

Killer Whale Nuclear Genome and mtDNA Reveal Widespread Population Bottleneck during the Last Glacial Maximum
Cited by: 62
Author(s): André E. Moura, Charlene Janse van Rensburg, Małgorzata Pilot, Arman Tehrani, Peter B. Best, Meredith Thornton, Stephanie Plön, P. J. Nico de Bruyn, Kim C. Worley, Richard A. Gibbs, Marilyn E. Dahlheim, A. Rus Hoelzel
Software Mentions: 1
Published: almost 11 years ago

10.3390/molecules19055611

miRNAs for the Detection of MultiDrug Resistance: Overview and Perspectives
Cited by: 23
Author(s): Andreas Gisel, Mirna Valvano, Imane Ghafir El Idrissi, Patrizia Nardulli, Amalia Azzariti, Antonio Carrieri, Marialessandra Contino, Nicola Antonio Colabufo
Software Mentions: 1
Published: over 10 years ago

10.3390/molecules22101653

A Comparative Genomic and Transcriptomic Survey Provides Novel Insights into N-Acetylserotonin Methyltransferase (ASMT) in Fish
Cited by: 12
Author(s): Kai Zhang, Zhiqiang Ruan, Jia Li, Chao Bian, Xinxin You, Steven L. Coon, Qiong Shi
Software Mentions: 1
Published: about 7 years ago

10.3390/molecules21020175

Self Organizing Map-Based Classification of Cathepsin k and S Inhibitors with Different Selectivity Profiles Using Different Structural Molecular Fingerprints: Design and Application for Discovery of Novel Hits
Cited by: 3
Author(s): Saleh Ihmaid, Hany E. A. Ahmed, Mohamed F. Zayed, Mohammed M. Abadleh
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules22091375

MTLD, a Database of Multiple Target Ligands, the Updated Version
Cited by: 7
Author(s): Chao Chen, Meng Wu, Shan Cen, Jianhui Wu, Jinming Zhou
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-32123-9

A two-step DNA barcoding approach for delimiting moth species: moths of Dongling Mountain (Beijing, China) as a case study
Cited by: 12
Author(s): Qian Jin, Xi-Min Hu, Hui-Lin Han, Fen Chen, Weijia Cai, Qian‐Qian Ruan, Bo Liu, Guijie Luo, Hao Wang, Xu Liu, Robert Ward, Chunsheng Wu, John James Wilson, Xiaoman Zhang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21249618

Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice
Cited by: 7
Author(s): Yi Pu Lin, Xing Feng, Qiaojun He, Muhammad Tahir ul Qamar, Lingling Chen, Yongzhong Xing
Software Mentions: 1
Published: almost 4 years ago

10.3390/v12101164

Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism
Cited by: 46
Author(s): Shona C. Moore, Rebekah Penrice-Randal, Muhannad Alruwaili, Nadine Randle, Stuart D. Armstrong, Catherine Hartley, Sam Haldenby, Xiaofeng Dong, Abdulrahman Alrezaihi, Mai Almsaud, Eleanor G. Bentley, Jordan J. Clark, Isabel García-Dorival, Paul Gilmore, Xiao Han, Benjamin Jones, Lisa Luu, Parul Sharma, Ghada Shawli, Yani Sun, Qin Zhao, Steven T. Pullan, Dan Carter, Kevin R. Bewley, Jake Dunning, En‐Long Zhou, Tom Solomon, Michael Beadsworth, James Cruise, Derrick W. Crook, David A. Matthews, Andrew D. Davidson, Zana H. Mahmood, Waleed Aljabr, Julian Druce, Richard Vipond, Lisa F. P. Ng, Laurent Rénia, Peter Openshaw, J Kenneth Baillie, Miles W. Carroll, James Stewart, Alistair C. Darby, Malcolm G Semple, Lance Turtle, Julian A. Hiscox
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.8106

Evaluation of performance of leading algorithms for variant pathogenicity predictions and designing a combinatory predictor method: application to Rett syndrome variants
Cited by: 9
Author(s): Satishkumar Ranganathan Ganakammal, Emil Alexov
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-7-55

A multispecies comparison of the metazoan 3'-processing downstream elements and the CstF-64 RNA recognition motif
Cited by: 45
Author(s): Jesse Salisbury, Keith W. Hutchison, Joel H. Graber
Software Mentions: 1
Published: over 18 years ago

10.7717/peerj.6305

Relative abundance and molecular evolution of Lake Sinai Virus (Sinaivirus) clades
Cited by: 16
Author(s): Robert S. Cornman
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.202

Comparative selenoproteome analysis reveals a reduced utilization of selenium in parasitic platyhelminthes
Cited by: 5
Author(s): Liang Jiang, Hua Zhu, Yichi Xu, Jiazuan Ni, Yan Zhang, Qiong Liu
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-019-40333-y

Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.)
Cited by: 6
Author(s): Sarika Jaiswal, Mir Asif Iquebal, Vasu Arora, Sonia Sheoran, Pradeep Sharma, U. B. Angadi, Vikas Dahiya, Rajender Singh, Ruchi Tiwari, Gyanendra Singh, Anil Rai, Dinesh Kumar
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.9648

Excessive G–U transversions in novel allele variants in SARS-CoV-2 genomes
Cited by: 16
Author(s): Alexander Y. Panchin, Yu. V. Panchin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-47832-y

Population-specific long-range linkage disequilibrium in the human genome and its influence on identifying common disease variants
Cited by: 19
Author(s): Leeyoung Park
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-9-506

c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Cited by: 3
Author(s): Katerina Kechris, Hao Li
Software Mentions: 1
Published: almost 16 years ago

10.1007/s12298-019-00740-x

Genetic characterization of cassava (Manihot esculenta Crantz) genotypes using agro-morphological and single nucleotide polymorphism markers
Cited by: 12
Author(s): Kumba Yannah Karim, Beatrice Elohor Ifie, Daniel Kwadjo Dzidzienyo, Eric Yirenkyi Danquah, Essie Blay, J. Whyte, Peter Kulakow, Ismail Rabbi, Elizabeth Parkes, Lucky O. Omoigui, Prince E. Norman, P. Iluebbey
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58916-5

QTL-Seq and Sequence Assembly Rapidly Mapped the Gene BrMYBL2.1 for the Purple Trait in Brassica rapa
Cited by: 25
Author(s): Xin Zhang, Kang Zhang, Jian Wu, Na Guo, Jiansheng Liang, Xiaowu Wang, Feng Cheng
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-015-1904-7

Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora
Cited by: 94
Author(s): Rahul Sharma, Xiaojuan Xia, Liliana Cano, Édouard Evangelisti, Eric Kemen, Howard S. Judelson, Stan Oome, Christine Sambles, D.J. van den Hoogen, Miloslav Kitner, Joel D. Klein, H.J.G. Meijer, Otmar Spring, Joe Win, Reinhard Zipper, Helge B. Bode, F. Govers, Sophien Kamoun, Sebastián Schornack, David J. Studholme, Guido Van den Ackerveken, Marco Thines
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-59397-2

Single-molecular real-time deep sequencing reveals the dynamics of multi-drug resistant haplotypes and structural variations in the hepatitis C virus genome
Cited by: 13
Author(s): Taiki Yamashita, Haruhiko Takeda, Atsushi Takai, Soichi Arasawa, Fumiyasu Nakamura, Yoichi Mashimo, Miyuki Hozan, Shigeru Ohtsuru, Hiroshi Seno, Yoshihide Ueda, Akihiro Sekine
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: perl

Papers Mentioning perl 604