Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pam

https://packages.ecosyste.ms/registries/pypi.org/packages/pam

6 versions
Latest release: almost 4 years ago
3 dependent packages
10,784 downloads last month

Papers Mentioning pam 21

10.7717/peerj.5794

beadplexr: reproducible and automated analysis of multiplex bead assays
Cited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: almost 6 years ago

The origins of money: Calculation of similarity indexes demonstrates the earliest development of commodity money in prehistoric Central Europe
Cited by: 11
Author(s): Maikel H.G. Kuijpers, Cătălin Nicolae Popa
Software Mentions: 9
Published: almost 4 years ago

10.1186/1471-2105-14-133

How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
Cited by: 23
Author(s): Robert Lehmann, Rainer Machné, Jens Georg, Manuela Benary, Ilka M. Axmann, Ralf Steuer
Software Mentions: 8
Published: over 11 years ago

10.1371/journal.pone.0246529

Unsupervised learning of Swiss population spatial distribution
Cited by: 0
Author(s): Mikhaïl Kanevski
Software Mentions: 7
Published: over 3 years ago

10.1186/1471-2105-11-279

Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver
Cited by: 12
Author(s): Tung Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Software Mentions: 6
Published: over 14 years ago

10.1038/s41598-020-67016-3

Recursive Consensus Clustering for novel subtype discovery from transcriptome data
Cited by: 5
Author(s): Pranali Sonpatki, Nameeta Shah
Software Mentions: 6
Published: over 4 years ago

10.1186/1471-2105-14-351

On the amyloid datasets used for training PAFIG how (not) to extend the experimental dataset of hexapeptides
Cited by: 10
Author(s): Małgorzata Kotulska, Olgierd Unold
Software Mentions: 6
Published: almost 11 years ago

10.18632/aging.203422

Hedgehog dysregulation contributes to tissue-specific inflammaging of resident macrophages
Cited by: 8
Author(s): Mahamat Babagana, Kyu-Seon Oh, Sayantan Chakraborty, Alicja Pacholewska, Mohammad Aqdas, Myong-Hee Sung
Software Mentions: 5
Published: about 3 years ago

10.1186/1471-2105-11-540

Circadian signatures in rat liver: from gene expression to pathways
Cited by: 24
Author(s): Meric Ovacik, Siddharth Sukumaran, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Software Mentions: 4
Published: about 14 years ago

10.1186/1471-2105-10-S1-S26

Principal component tests: applied to temporal gene expression data
Cited by: 3
Author(s): Wensheng Zhang, Hong-Bin Fang, Jiuzhou Song
Software Mentions: 3
Published: almost 16 years ago

10.1186/s12859-020-03690-4

Leveraging TCGA gene expression data to build predictive models for cancer drug response
Cited by: 22
Author(s): Evan Clayton, Toyya A. Pujol, John F. McDonald, Peng Qiu
Software Mentions: 3
Published: about 4 years ago

10.1002/ece3.5956

Transcriptomic regulation of seasonal coat color change in hares
Cited by: 13
Author(s): Mafalda S. Ferreira, Paulo C. Alves, Colin M. Callahan, Iwona Giska, Liliana Farelo, Hannes Jenny, L. Scott Mills, Klaus Hackländer, Jeffrey M. Good, José Melo‐Ferreira
Software Mentions: 3
Published: almost 5 years ago

10.1063/1.5125493

Analyzing collective motion with machine learning and topology
Cited by: 22
Author(s): Dhananjay Bhaskar, Angelika Manhart, Jesse Milzman, John T. Nardini, Kathleen M. Storey, Chad M. Topaz, Lori Ziegelmeier
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep24658

Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2
Cited by: 27
Author(s): Bilge San, Naomi D. Chrispijn, Nadine Wittkopp, Simon J. van Heeringen, Anne Karine Lagendijk, Marco Aben, Jeroen Bakkers, René F. Ketting, Leonie M. Kamminga
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-11-590

Merged consensus clustering to assess and improve class discovery with microarray data
Cited by: 54
Author(s): T. Ian Simpson, J. Douglas Armstrong, Andrew P. Jarman
Software Mentions: 2
Published: almost 14 years ago

10.1186/1471-2105-11-515

Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures
Cited by: 16
Author(s): Tung Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-016-2970-1

The transposable element environment of human genes is associated with histone and expression changes in cancer
Cited by: 7
Author(s): Laura Grégoire, Annabelle Haudry, Emmanuelle Lerat
Software Mentions: 2
Published: about 8 years ago

10.1128/JVI.00991-17

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments
Cited by: 22
Author(s): Peter Hraber, Cecilia Rademeyer, Carolyn Williamson, Michael S. Seaman, Raphaël Gottardo, Haili Tang, Kelli Greene, Hongmei Gao, Celia C. LaBranche, John R. Mascola, Lynn Morris, David C. Montefiori, Bette T. Korber
Software Mentions: 1
Published: about 7 years ago

10.1186/gb-2007-8-8-r157

An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer
Cited by: 444
Author(s): Andrew E. Teschendorff, Ahmad Miremadi, Sarah Pinder, Ian O. Ellis, Carlos Caldas
Software Mentions: 1
Published: almost 18 years ago

10.1186/gm323

Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation
Cited by: 153
Author(s): Andrew E. Teschendorff, Allison Jones, Heidi Fiegl, Alexandra Sargent, Joanna Zhuang, Henry C Kitchener, Martin Widschwendter
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13742-016-0152-3

Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets
Cited by: 6
Author(s): Apurva Narechania, Richard H. Baker, Rob DeSalle, Barun Mathema, Sergios‐Orestis Kolokotronis, Barry N. Kreiswirth, Paul J. Planet
Software Mentions: 1
Published: about 8 years ago